Sed0019615.1 (mRNA) Chayote v1

Overview


Name	Sed0019615.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 12499094 .. 12499705 (-)
Sequence length	612
RNA-Seq Expression	Sed0019615.1
Synteny	Sed0019615.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGCCGCTCCTACCAATCACCGCCGTTGATTTCAACATTTTCCGATCCGTATCTTGATTGATCTGATCTGACCTGATCGGCGCTACGATTTCAAATTGAAGAAGATAGAGTAAATTCGGATCGGAGATTTGAAATGGAGAGAGAAAAGAGGAAGAAAATGTTGCCGGAGGATAGCGGCGGAGTGGTTGAAGAAACGACGACGAATAAAAAGGAGAAGAGAGAGACGCCGGCGGCGGAGGAGGAGGAGGAGGAGCCGACGACGGAGGAGGTAGAGGAGTTCTATGCCATTTTGAGGAGGATAGATGTGGCTATGCGTTACTTGAAAGGGCGGGCACAGAAGAGGTCGACGCCGGAGGCGGGAGAGGTGGAGGAAAATAAAGAACTGAATTTGAATGAAATTCCTTCAGATTCTACTGATTAATTTTGGTTGATAAGCTCTCCACGGATGTTTGTTTTCGTTCAACTTTATGCTAATTACTGTAAAAATCTTATTCCTATTATTATCATATTTCAATTAATAACCAAAATGTGTTTTCGGTTCTTCCTAATTATCCAGTTTTATTTCATCTTTTTTTCATATTCGCTTTTTAAGATCTCTAGCAATGAAA

mRNA sequence

AAAATGGCCGCTCCTACCAATCACCGCCGTTGATTTCAACATTTTCCGATCCGTATCTTGATTGATCTGATCTGACCTGATCGGCGCTACGATTTCAAATTGAAGAAGATAGAGTAAATTCGGATCGGAGATTTGAAATGGAGAGAGAAAAGAGGAAGAAAATGTTGCCGGAGGATAGCGGCGGAGTGGTTGAAGAAACGACGACGAATAAAAAGGAGAAGAGAGAGACGCCGGCGGCGGAGGAGGAGGAGGAGGAGCCGACGACGGAGGAGGTAGAGGAGTTCTATGCCATTTTGAGGAGGATAGATGTGGCTATGCGTTACTTGAAAGGGCGGGCACAGAAGAGGTCGACGCCGGAGGCGGGAGAGGTGGAGGAAAATAAAGAACTGAATTTGAATGAAATTCCTTCAGATTCTACTGATTAATTTTGGTTGATAAGCTCTCCACGGATGTTTGTTTTCGTTCAACTTTATGCTAATTACTGTAAAAATCTTATTCCTATTATTATCATATTTCAATTAATAACCAAAATGTGTTTTCGGTTCTTCCTAATTATCCAGTTTTATTTCATCTTTTTTTCATATTCGCTTTTTAAGATCTCTAGCAATGAAA

Coding sequence (CDS)

ATGGAGAGAGAAAAGAGGAAGAAAATGTTGCCGGAGGATAGCGGCGGAGTGGTTGAAGAAACGACGACGAATAAAAAGGAGAAGAGAGAGACGCCGGCGGCGGAGGAGGAGGAGGAGGAGCCGACGACGGAGGAGGTAGAGGAGTTCTATGCCATTTTGAGGAGGATAGATGTGGCTATGCGTTACTTGAAAGGGCGGGCACAGAAGAGGTCGACGCCGGAGGCGGGAGAGGTGGAGGAAAATAAAGAACTGAATTTGAATGAAATTCCTTCAGATTCTACTGATTAA

Protein sequence

MEREKRKKMLPEDSGGVVEETTTNKKEKRETPAAEEEEEEPTTEEVEEFYAILRRIDVAMRYLKGRAQKRSTPEAGEVEENKELNLNEIPSDSTD

Homology

[Close]

BLAST of Sed0019615.1 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MEREKRKKMLPEDSGGVVEETTTNKK------EKRETPAAEEEEEEPTTEEVEEFYAILR 60
           MEREKRK+M   + GGVVEE    KK      E+++   A  E EEP+TEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RIDVAMRYLKGR--AQKRST-PEAGEVEENKELNLNEIPSDSTD 96
           R+D A+RYLKG+   ++R+T  E     ENKELNLNE+PSDS++
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]

BLAST of Sed0019615.1 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-13
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MEREKRKKMLPEDSGGVVEETTTNKKEKRETPAA---EEEEEEPTTEEVEEFYAILRRID 60
           MEREKRKKM P +     + +   +KE+RE  AA   E E EEPTTEEVEEFYAILRR+D
Sbjct: 1   MEREKRKKMSPGEK--ETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFYAILRRMD 60

Query: 61  VAMRYLKGR--AQKRSTPE-----AGEVEENKELNLNEIPSDSTD 96
           VA+RYLKG+   ++R+T E      G+ +E +ELNLNE+P+DST+
Sbjct: 61  VALRYLKGKRVVERRTTAETAVVGTGKGQEIQELNLNEVPADSTN 103

[Close]

BLAST of Sed0019615.1 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MEREKRKKMLPEDSGGVVEETTTNKK------EKRETPAAEEEEEEPTTEEVEEFYAILR 60
           MEREKRK+M   + GGVVEE    KK      E+++   A  E EEP+TEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RIDVAMRYLKGR--AQKRST-PEAGEVEENKELNLNEIPSDSTD 96
           R+D A+RYLKG+   ++R+T  E     ENKELNLNE+PSDS++
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of Sed0019615.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64116.1	9.3e-14	55.77	hypothetical protein Csa_013670 [Cucumis sativus]	[more]
KAG6584363.1	6.0e-13	55.24	hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0019615.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019615.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR0	4.5e-14	55.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

BLAST of Sed0019615.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0019615	Sed0019615	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019615.1-exon	Sed0019615.1-exon-LG01:12499094..12499705	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019615.1-three_prime_utr	Sed0019615.1-three_prime_utr-LG01:12499094..12499280	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019615.1-cds	Sed0019615.1-cds-LG01:12499281..12499568	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019615.1-five_prime_utr	Sed0019615.1-five_prime_utr-LG01:12499569..12499705	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0019615.1	Sed0019615.1-protein	polypeptide