Sed0019241.1 (mRNA) Chayote v1

Overview


Name	Sed0019241.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	respirasome Complex Assembly Factor 1-like
Location	LG01: 8255178 .. 8257822 (-)
Sequence length	1038
RNA-Seq Expression	Sed0019241.1
Synteny	Sed0019241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATAATTAATTTTTAATCATTCTTAAAACAACGTTAATTCCATTAAATATTTTTTGTTTCTGAAATTTAAATCTATTTTAAAACCAATTTCAAAATGAGAATCTCACGCAGCACAAATTTTGTAGAATAAACAAAGGCTGCCCAGCAAAAGATGTTCACGTTTTAGAGAGAGAGATAGAGAGAAGAATTTTTTTGAATTTCCGAGTTGAGATTGAAATGGAGTTCATAAATTTTTCTTGACAAAAACAAATCGAAAGGGATGTACCCAAAGCCGTCCCCACTCGGATGCTGTTCTTGCTTTTTTCAAAACCCTAAACCCATCTTCCATTCTTCCCTGTAGATTTCTGTTCTAATTTCCCCCCAAATTTTCAGTTTCCGATCAGCCGGCATGAAGGACGGGAAGTCGATCAAGGTGAATCCCGAGTTTCTGCACCAGAACGGTCACTTGCCGCCCTTCAAATTCGCCAAATTGTTCGATCCAGAGGCTTCATGGGATAGGGTTTTCTTTAATTTTCCTCTCTTATCAATTCTATTATAGGAGGTGTTTGGATGAGTAATTGCAGGAGTGATTCTCAATGATTAGAATGAGTATTATTTTGAGTGATTAGAAATTGACATATAACTCTATTTTTGTAGAGTAGATGCGCCGATAACTCGTTTAATATGATTTTTTTTTTTTTTTGTAGAAAGCTGGTAACCAATAATTCCTTTGGATATGGATTTTGGTAGGGAGGTTAGATAAATGAGTGATTTTAAAATGAGGTTAGATAAACCATCGTGGGATGGCTCAATTGATCAAAGAGGGTTTTGGGGTGCATGAGATGATGAGTTTAATCTTCATGGTGGCCACCCACCTAGGAATTAATTTCCTACTGGTTTCCTTGGCATCCAAATATTGTAGGGTATGCCCCCATGGCATTGATTGAGGTGGGCGCGTAAGCTGGCCCGAACAGTTACCGATAATAGCTTGTTTGGATATAATTTTTTGAAAAGTGATGGCGAAAGCTCATTTTTAATAGATTGTTAAATACTAAAAACAAAAACCTCCGTGTGCAATCGAAATTCTAATAATAAGCCTCTGTTTTCTAGGATGTTTCGCCTCTTGTTTTCACTGTAGACGAAAAGGAACTGAAGTTTTCATTGATTCAAGCTATTGGTTGTTCTGCTGTAGTGAATTTTAATTTATAACTCATGTAAATCTATGCATTACCCCTAAAATTTAACGAATTGAGATTTTTGTGTTTATTATTGTAATGAATTGAGTTGACTGTTTGAGCAATTGTTGTGATTGATTGAATATCATTGATAGAGAAAGGGGGAAAGAAGCCATGAATGAGAATATTTTATATTTTGTATCTGAAATCAATTGAATGGGAAGATTCTTCTACAATACATTGAATTGTTGCCTCCACAGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAATCAGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTTGTTGGAGGAATTTGGTTCATCTTGTAAGTTGCCATTTCCACCATACCTTTCTCTTAGTGGCATTTATGTGTTTAGGATCGCTTTGGGCAGTGTTTCTAAATGAAACTAGCTCTTGTTAAGCCAAAAGTAGTAGTATTCCCGTGACATCACATATCACCCGGTAATCTGGGTTACGGGTTTGAGTCTCAAATGCTGTTGAATTCAAAAAGAAAGTTTCCCTTGTTAACACTTTTGGAAAACATACGAATTAAGTCATTTCAAGCATTTTAAATTGTTTTTCAAGTGTTCTTTTAGAACTGAGCTTCATGGAAATTTTGAAGATGGTTTCGTTAACAAAAAACACTTTTAGCGTAGTTTTTTCTATTTACCTTAGCTCTAACTGGTTGAGGCATATATCCTTGACTACAAAGATTTATTTCACATGTTGAACTCAAAAAATTGAATCTCTAGTCCCATATGTTAGCATCCTTAAATGCATGCATCTTGAGAGATAAGATTTAACAGCAAAATAAAAAAAATAAAAAATTGACTTTCTTTTGTAGTATCATTATCTCGACATTTTTTTTTCTTGCACTTAGAATCTTTAGTCAATTTTATGAACTTGGTCTTGTTTTCAGATTCCTGGCGATATCGACCGCGATGGTATACGGATACTACGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAATCTTGTTGCATCTGTTAACTCTCCAAACTATAATCTGAATCTTTCTCTTGTGTTAGTTCAAGTGCTCATTTTCCTTTTTTTCTCTATTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATACCGAGTTAAGCAATGGAGGGGGAGGTTGGCCGCCATTATTGCTTGCTTTTTTTTTAATTAGTGTTGTGTAGTAGCTTGTCGTTGAGGAGTAACAGGAGTGGAACACTCTTAGAAAGTGTCCACAAGTTAGAACTTAGAACTGGGTTAATTTCATTAGAATTACAACTAACCAAACTCTAGTTGTTAATGTTATTATTGATTCTGTTAAAATCAATTCAATCTTCTTAAAAGAATAAAATCTTCAAACAAATGCAGTTTGG

mRNA sequence

ATTAAATAATTAATTTTTAATCATTCTTAAAACAACGTTAATTCCATTAAATATTTTTTGTTTCTGAAATTTAAATCTATTTTAAAACCAATTTCAAAATGAGAATCTCACGCAGCACAAATTTTGTAGAATAAACAAAGGCTGCCCAGCAAAAGATGTTCACGTTTTAGAGAGAGAGATAGAGAGAAGAATTTTTTTGAATTTCCGAGTTGAGATTGAAATGGAGTTCATAAATTTTTCTTGACAAAAACAAATCGAAAGGGATGTACCCAAAGCCGTCCCCACTCGGATGCTGTTCTTGCTTTTTTCAAAACCCTAAACCCATCTTCCATTCTTCCCTGTAGATTTCTGTTCTAATTTCCCCCCAAATTTTCAGTTTCCGATCAGCCGGCATGAAGGACGGGAAGTCGATCAAGGTGAATCCCGAGTTTCTGCACCAGAACGGTCACTTGCCGCCCTTCAAATTCGCCAAATTGTTCGATCCAGAGGCTTCATGGGATAGGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAATCAGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTTGTTGGAGGAATTTGGTTCATCTTATTCCTGGCGATATCGACCGCGATGGTATACGGATACTACGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATACCGAGTTAAGCAATGGAGGGGGAGGTTGGCCGCCATTATTGCTTGCTTTTTTTTTAATTAGTGTTGTGTAGTAGCTTGTCGTTGAGGAGTAACAGGAGTGGAACACTCTTAGAAAGTGTCCACAAGTTAGAACTTAGAACTGGGTTAATTTCATTAGAATTACAACTAACCAAACTCTAGTTGTTAATGTTATTATTGATTCTGTTAAAATCAATTCAATCTTCTTAAAAGAATAAAATCTTCAAACAAATGCAGTTTGG

Coding sequence (CDS)

ATGAAGGACGGGAAGTCGATCAAGGTGAATCCCGAGTTTCTGCACCAGAACGGTCACTTGCCGCCCTTCAAATTCGCCAAATTGTTCGATCCAGAGGCTTCATGGGATAGGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAATCAGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTTGTTGGAGGAATTTGGTTCATCTTATTCCTGGCGATATCGACCGCGATGGTATACGGATACTACGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGA

Protein sequence

MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF

Homology

[Close]

BLAST of Sed0019241.1 vs. NCBI nr
Match: XP_022948613.1 (uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >KAG6607251.1 Respirasome Complex Assembly Factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036935.1 hypothetical protein SDJN02_00555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 4.2e-62
Identity = 118/127 (92.91%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. NCBI nr
Match: XP_022998338.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 9.4e-62
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFI+FL IST MVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. NCBI nr
Match: XP_038895585.1 (respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 115/127 (90.55%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS KVN +  HQNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSTKVNSQLQHQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. NCBI nr
Match: XP_008457469.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 111/127 (87.40%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGK++KVN +  HQNGHLPPFK A+LFDPE SWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFL IST M+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 VYSLGHF 128
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. NCBI nr
Match: XP_004145291.1 (uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN65732.1 hypothetical protein Csa_019550 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS+KVN + L QNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSMKVNSQ-LQQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGG+WFILFL IST M+YGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           +YSLGHF
Sbjct: 121 IYSLGHF 126

[Close]

BLAST of Sed0019241.1 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 45/128 (35.16%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLW 60
           M  G+  +  P+    NG L    ++K+   +A+W D+D+  DV++W RQ +ALV G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIW 60

Query: 61  GSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWT 120
           G +PL G +    F  I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF+++W 
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWI 120

Query: 121 LVYSLGHF 128
           + Y+  H+
Sbjct: 121 IFYTAIHY 128

[Close]

BLAST of Sed0019241.1 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLW 60
           M  G+  +  P+    NG L    ++K+   +A+W D+D+  DV++W RQ +A+V G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61  GSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWT 120
           G +PL G +    F  I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF++   
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVA 120

Query: 121 LVYSLGH 127
             ++ GH
Sbjct: 121 DSFTTGH 127

[Close]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL
Match: A0A6J1G9S8 (uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452238 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 118/127 (92.91%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL
Match: A0A6J1KGG2 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493006 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.5e-62
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFI+FL IST MVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL
Match: A0A1S3C692 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-61
Identity = 111/127 (87.40%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGK++KVN +  HQNGHLPPFK A+LFDPE SWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFL IST M+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 VYSLGHF 128
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL
Match: A0A0A0LY22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS+KVN + L QNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSMKVNSQ-LQQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGG+WFILFL IST M+YGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 128
           +YSLGHF
Sbjct: 121 IYSLGHF 126

[Close]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL
Match: A0A2P5DQJ9 (Rab5-interacting protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_041820 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 101/127 (79.53%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWG 60
           MK+ KS+K+N +  HQNGHL PFKFAKL DPEASWD+DQLGDVLHW+RQ+VAL+CGLLWG
Sbjct: 1   MKEAKSVKLNGQQQHQNGHLSPFKFAKLLDPEASWDKDQLGDVLHWIRQAVALICGLLWG 60

Query: 61  SVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           ++PLVGGIWF+ FLAIS+ ++YGYYAMILKVDEEEFGGHG LLQEGLFAS+TLFLL W L
Sbjct: 61  AIPLVGGIWFVTFLAISSGIIYGYYAMILKVDEEEFGGHGALLQEGLFASVTLFLLAWVL 120

Query: 121 VYSLGHF 128
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Sed0019241.1 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-51
Identity = 96/130 (73.85%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MKDGKSIKVN---PEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGL 60
           MK+ KS K+N    +  HQN HL P K AKLFDP+ASWD+DQLGDVLHW+RQ V L+ GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLM 120
           LWGS+PLVGGIW ILFLAIS+ +VYGYYAMILKVDEE+FGGH  LLQEGLFAS+TLFLL 
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 WTLVYSLGHF 128
           W LVYSL HF
Sbjct: 121 WILVYSLAHF 130

[Close]

BLAST of Sed0019241.1 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.4e-49
Identity = 89/133 (66.92%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MKDGKSIK------VNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALV 60
           MK+GKS K       + +  HQN HL  F FAKLFD EASWD+DQLGDVLHW+RQ V L+
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  CGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLF 120
           CGLLWG++PLVGGIW +LFLAIS+ +VYGYYA++LK+DEE+FGGH  LLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLMWTLVYSLGHF 128
           LL W LVYSL  F
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of Sed0019241.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948613.1	4.2e-62	92.91	uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 un...	[more]
XP_022998338.1	9.4e-62	92.13	uncharacterized protein C20orf24 homolog [Cucurbita maxima]	[more]
XP_038895585.1	2.1e-61	90.55	respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]	[more]
XP_008457469.1	1.0e-60	87.40	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]	[more]
XP_004145291.1	8.8e-60	88.98	uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN65732.1 hypothetica...	[more]

BLAST of Sed0019241.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	1.1e-17	35.16	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	2.3e-15	33.86	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of Sed0019241.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9S8	2.0e-62	92.91	uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KGG2	4.5e-62	92.13	uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A1S3C692	5.0e-61	87.40	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150...	[more]
A0A0A0LY22	4.2e-60	88.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1	[more]
A0A2P5DQJ9	1.8e-55	79.53	Rab5-interacting protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_041820 P...	[more]

BLAST of Sed0019241.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	1.2e-51	73.85	Rab5-interacting family protein	[more]
AT2G29020.1	7.4e-49	66.92	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 43..122 e-value: 6.5E-14 score: 52.2
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 2..127
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 2..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0019241	Sed0019241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019241.1-exon	Sed0019241.1-exon-LG01:8255178..8255478	exon
Sed0019241.1-exon	Sed0019241.1-exon-LG01:8255577..8255706	exon
Sed0019241.1-exon	Sed0019241.1-exon-LG01:8256301..8256404	exon
Sed0019241.1-exon	Sed0019241.1-exon-LG01:8257320..8257822	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019241.1-three_prime_utr	Sed0019241.1-three_prime_utr-LG01:8255178..8255439	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019241.1-cds	Sed0019241.1-cds-LG01:8255440..8255478	CDS
Sed0019241.1-cds	Sed0019241.1-cds-LG01:8255577..8255706	CDS
Sed0019241.1-cds	Sed0019241.1-cds-LG01:8256301..8256404	CDS
Sed0019241.1-cds	Sed0019241.1-cds-LG01:8257320..8257430	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019241.1-five_prime_utr	Sed0019241.1-five_prime_utr-LG01:8257431..8257822	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0019241.1	Sed0019241.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane