Sed0018701.1 (mRNA) Chayote v1

Overview


Name	Sed0018701.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA-splicing factor 38
Location	LG11: 3781069 .. 3785112 (-)
Sequence length	1570
RNA-Seq Expression	Sed0018701.1
Synteny	Sed0018701.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCATTTCCCACCTTCGTGAGTCGTACGGCTCATTTCGCCACCATCTCTCTCGCCCGGCGACCAAATTAGGGTTTCGATCATTCCTCTCCATCGATTTCTCTGCAACAACGCCGATTTCTCTGTTCTTTAGCCAGTACTAATGGCGAATCGCACGGACCCAACTGCCAAAAGCATAAGGGGAACGAACCCACAGAACTTGGTGGAGAAGATTCTGCGCTCCAAGATCTACCAGAACACTTTCTGGAAGGAGCAGTGTTTTGGTCTTACGGCGGAGACATTGGTCGATAAGGCCATGGAACTCGACCACCTCGGCGGTACATTTGGCGGAAACCGTAAGCCCACGCCGTTCATGTGCCTCGTCATGAAGATGCTCCAGATCCAGCCCGAGAAAGAAATCGTCATCGAGTTCATCAAGAATGAAGACTACAAGTAATTTTTCTTCTTATTTTTGTGTTGATTGAATATAGCTCTGCATTTTAGTTGTGTAGAAAAGTTGAGGAGTAGTGTTAATTGGAGGGAGTATTTCAATTGTTTGTTTTATGGAGTTGAGTGAATTCGTGATTTGTGGAACTTGTTGCGGACTCTGTGAAAGATAAATTCAAGTTTTTGCAGTGTATCTGTGAATTGGGAATTTGAATTATTAAGACTAATCATTTTGTTTCTAATTTTTGGTTTTGGAAATTTAAACCTACCGCAAGTGATTTTTTTTACTTAGATATCTACTTCTTACCTATGTTTTTAAAAAGAAAACCAAAATTTGGAAACAAAAAGACGTAGCTTCAAAATCTTGTTTCTGAATTTGGTTAGTATTCACGAACTTTCTTAAGATGGATGGAATACATGGTTCTAAATGGTTATCAAATCGGGCCTAAATGATTTAAGAACTTCTATATGGTCACTATCTATTGTAATTGTGCTTAAATAAGCATATGGTCTTGATAACTAGGCTTATGATTGAGCTAACTGAACTTAATTGGAAATGGGTTCTATATTTTGTGGTGTTCTCTATGTTTCTTTAAGTTGTTGCTTAATCGCCGTAGTTTGCAATGCTGGATTTTATTTTGTATTGTCTTGTAAATGTGTTGTATGGTCGAATCTAAATCTTTCTACTATAATTTATTCGATATCTATGTAGTATAAATTATTAGCAATGCAAAAACTCTCTTGCAATTTCCTGAGAATGCCGTGTTGGTTCTCTGGCCTTTTTCAAGCACTCTTTTGGAGTTAACTTTTTTTCTTTGGGCATAGATATGTTCGGATTCTTGGTGCCTTTTACTTGCGTCTCACTGGAACTGACGTTGATGTGTATCGCTACCTGGAGCCTCTGTACAATGACTACCGGAAATTGAGGAGAAAATTAGCTGATGGATGTAAGACTTGGGGTTTCTTCTTGATGTTTTATCCAGTTAGTTATTTGTGAAAACCAGTTGATTTAACTTCTTCTTGCATTAATGTTTTTTTAATCTTATTGTTATCAGGTTTTTCTTTAACACATGTGGATGAAGTCATTGACGAACTTCTCACTAAAGATTATTCATGTGATATTGCTTTGCCACGTGTTAAAAAGAGGTATGAAACAAATGACTTACATAACTATTTTCTGGTCAATTTAATTTTCAGGCAGAAGTTGATAATGTATAATTAAAATCATTAGATTAGGGACAGTTCATGTAGGGTGTCCCCTTTTTTGTTTGTTCTTGTGTTATTCTTTCCTTCTAATCTTTATTCAAATGAAGTTTGGTATTTCATACAAACATAATTTTATCAAAATCACCTTCTTAGGAGAAATATGCATAATCATTGTTTGAAAAACAGAAGTACTTGGATCACAAGTTTAAACCTTGCTGTTCTATCCTTCTCTTTATGTATCTCTTCTATAGTGTTCAATTTTGAATGCTATACTACATCTGGAAATAATGTAAGATTTATGTTGCAATGACAGATGGACCCTCGAATCTACTAGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGACATTGAGCCACTTAATGATGCCTTAGAAGATGAGAATCATGATAAGGTTTGCATGCATTCTCTGTTTGTTTATGTAAATGAGCATCCATCATGCATTTGCATCTCCTTGTTAACCCTTTTGATATTTTGCATGTTCAGAATTATTACCGAGGGAGAAGTCCTGCGCGGGAGAGAGATAGAGATAGAAGGCGTGACAGTCACAGACACAGGTCCAATACCATACTTTTTGTTCTCATCTTTTATATATCCAACTCAATTATGCTACTCTTTATGAGTTTGTGAATAAAATCCTGTAGAGGAGGGCAATTGATTGATATCTTCCGTCTATTTCCTGTCATCATTTTGTTGATCACATCTTTCATTGTACACTTACACGACTAATTAGGTCCAAGATCGAAATAAAATTTTGAACTCAAAATGTGTGTTACACTTGAGAGCTTTTGTTGGCCAAAATGTCAAATGCAATTCTATTTAACAAGTTTTGGAGATTAATGGGAGGATAGAAGTTGTCGCATGACATGAAATTCTAGGTTCGGTCTAGCCAGCCGCCTGGGAAATCAACGCTCTTTCCTACCTTGGAATTGGATTTAGTTGACTCTTATATCTTGTCCCTTTCGAGCTTGTAGTTATAGGTCCTGCAAGTGCTGCGTTGATTTTTGTTTTTGACAATTTAACTTATATGTGAACAAATAAATTTTTTCAATTCCTGAAAATGATTTGTTATGCAATGCCACTGTTTATAAAACACAGTTTTTCTGTTGCATAGTTGGAGGCAGTTGGAGTTTTGAGTTCTCGAATTCCTTTCCACACCGGTCGACTAACATTTATATGTTTTTTGTGACAACCATGGCATTTCAAGCCATTGGTTGCTTGCTGCTTCCTACAATAAATTCTCTAGATCCTGCCAGGTTTCTCTGTACTGACAGTGTACAGTTGAGAAGTATGATGGATCATACATATATTAGTCTAAGCGATTTCATTTTCTCACTTTATTAATTCTTTTAGCTTTTTGGTGAAACAGTTAATTTGTATTTTTTTTTTGGTACCATGAAGTCGAAGCTTATATTTGGTGTCATTTCCAAAGAAAGAAAAATGAATAATGCACAACTTTTCAAACTTGTTAGTAAATACCTGTTTGTGCGTCTGGTATATGGATATTTTCTTCATCTTTTGATCCTGAAATTTGTGTCCATCTTTTCTGATGCATTAGATACTTGCACTTATAGCTGTCTTACTAGATGGGGAACTAATTTGAATTGTCACTCTACATTTTTCTTTTTCTCAATCACAGGGACCGAGATTATGATAGGGACCGAGATTATGATAGAGACCGAGACTATGACAGAGACTACGATAGAGATCGAGGGCGTGGACGAGAAAGAGATAGAGACCGAGAAAGGGATAGAGATAGGGACAGAGATAGAGATAGAGATAGAGATCGTGATAGGGACAGGGATCGAGATAGGGATCGTTATTGCTTAAGGGATGAGAAGGAATATGGCAGGGATCGAGACAGAGAAAGGGAAGGCAGGGAGCGGGAGAGGCGAGACAGAGATCGTGGCAGGAGGAGGAGCCCTTCAAGGAGCCGAAGTAGGAGTAAGGATAGGGAGGATGGGGAGCACCGCAAGAGACATGCTCGTAGCAGCGTTAGTCCTAGACGAAGAGATGCAGCGGAGGATAGAGACGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGTGGCTGCGGCGGGTGAGGAGGATCCGGAGATTGCAGAATGGAACCGAATTCGTGCTACTCTTGGACTGGCACCTCTGAAGTAGTAGTAGTATATATCTTCTGTTTTGTGTATGATATTTGCTGGAAATTACAATATGTTCAGCCAGCCTTCTTGTCCTATGGCTATATACTTTGGATTGTAAAATTTCTCACATTTTGGGTACTTATTGAGTTGTGTTCCATATTGCCTTTTGGATACTTCAATTGTCCATGAGTATTTCCAGCAGCATGAAATGTACTTTTATTCCAAGGAGCA

mRNA sequence

GGCATTTCCCACCTTCGTGAGTCGTACGGCTCATTTCGCCACCATCTCTCTCGCCCGGCGACCAAATTAGGGTTTCGATCATTCCTCTCCATCGATTTCTCTGCAACAACGCCGATTTCTCTGTTCTTTAGCCAGTACTAATGGCGAATCGCACGGACCCAACTGCCAAAAGCATAAGGGGAACGAACCCACAGAACTTGGTGGAGAAGATTCTGCGCTCCAAGATCTACCAGAACACTTTCTGGAAGGAGCAGTGTTTTGGTCTTACGGCGGAGACATTGGTCGATAAGGCCATGGAACTCGACCACCTCGGCGGTACATTTGGCGGAAACCGTAAGCCCACGCCGTTCATGTGCCTCGTCATGAAGATGCTCCAGATCCAGCCCGAGAAAGAAATCGTCATCGAGTTCATCAAGAATGAAGACTACAAATATGTTCGGATTCTTGGTGCCTTTTACTTGCGTCTCACTGGAACTGACGTTGATGTGTATCGCTACCTGGAGCCTCTGTACAATGACTACCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTAACACATGTGGATGAAGTCATTGACGAACTTCTCACTAAAGATTATTCATGTGATATTGCTTTGCCACGTGTTAAAAAGAGATGGACCCTCGAATCTACTAGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGACATTGAGCCACTTAATGATGCCTTAGAAGATGAGAATCATGATAAGAATTATTACCGAGGGAGAAGTCCTGCGCGGGAGAGAGATAGAGATAGAAGGCGTGACAGTCACAGACACAGGGACCGAGATTATGATAGGGACCGAGATTATGATAGAGACCGAGACTATGACAGAGACTACGATAGAGATCGAGGGCGTGGACGAGAAAGAGATAGAGACCGAGAAAGGGATAGAGATAGGGACAGAGATAGAGATAGAGATAGAGATCGTGATAGGGACAGGGATCGAGATAGGGATCGTTATTGCTTAAGGGATGAGAAGGAATATGGCAGGGATCGAGACAGAGAAAGGGAAGGCAGGGAGCGGGAGAGGCGAGACAGAGATCGTGGCAGGAGGAGGAGCCCTTCAAGGAGCCGAAGTAGGAGTAAGGATAGGGAGGATGGGGAGCACCGCAAGAGACATGCTCGTAGCAGCGTTAGTCCTAGACGAAGAGATGCAGCGGAGGATAGAGACGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGTGGCTGCGGCGGGTGAGGAGGATCCGGAGATTGCAGAATGGAACCGAATTCGTGCTACTCTTGGACTGGCACCTCTGAAGTAGTAGTAGTATATATCTTCTGTTTTGTGTATGATATTTGCTGGAAATTACAATATGTTCAGCCAGCCTTCTTGTCCTATGGCTATATACTTTGGATTGTAAAATTTCTCACATTTTGGGTACTTATTGAGTTGTGTTCCATATTGCCTTTTGGATACTTCAATTGTCCATGAGTATTTCCAGCAGCATGAAATGTACTTTTATTCCAAGGAGCA

Coding sequence (CDS)

ATGGCGAATCGCACGGACCCAACTGCCAAAAGCATAAGGGGAACGAACCCACAGAACTTGGTGGAGAAGATTCTGCGCTCCAAGATCTACCAGAACACTTTCTGGAAGGAGCAGTGTTTTGGTCTTACGGCGGAGACATTGGTCGATAAGGCCATGGAACTCGACCACCTCGGCGGTACATTTGGCGGAAACCGTAAGCCCACGCCGTTCATGTGCCTCGTCATGAAGATGCTCCAGATCCAGCCCGAGAAAGAAATCGTCATCGAGTTCATCAAGAATGAAGACTACAAATATGTTCGGATTCTTGGTGCCTTTTACTTGCGTCTCACTGGAACTGACGTTGATGTGTATCGCTACCTGGAGCCTCTGTACAATGACTACCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTAACACATGTGGATGAAGTCATTGACGAACTTCTCACTAAAGATTATTCATGTGATATTGCTTTGCCACGTGTTAAAAAGAGATGGACCCTCGAATCTACTAGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGACATTGAGCCACTTAATGATGCCTTAGAAGATGAGAATCATGATAAGAATTATTACCGAGGGAGAAGTCCTGCGCGGGAGAGAGATAGAGATAGAAGGCGTGACAGTCACAGACACAGGGACCGAGATTATGATAGGGACCGAGATTATGATAGAGACCGAGACTATGACAGAGACTACGATAGAGATCGAGGGCGTGGACGAGAAAGAGATAGAGACCGAGAAAGGGATAGAGATAGGGACAGAGATAGAGATAGAGATAGAGATCGTGATAGGGACAGGGATCGAGATAGGGATCGTTATTGCTTAAGGGATGAGAAGGAATATGGCAGGGATCGAGACAGAGAAAGGGAAGGCAGGGAGCGGGAGAGGCGAGACAGAGATCGTGGCAGGAGGAGGAGCCCTTCAAGGAGCCGAAGTAGGAGTAAGGATAGGGAGGATGGGGAGCACCGCAAGAGACATGCTCGTAGCAGCGTTAGTCCTAGACGAAGAGATGCAGCGGAGGATAGAGACGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGTGGCTGCGGCGGGTGAGGAGGATCCGGAGATTGCAGAATGGAACCGAATTCGTGCTACTCTTGGACTGGCACCTCTGAAGTAG

Protein sequence

MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPARKSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYDRDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRDEKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRRDAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK

Homology

[Close]

BLAST of Sed0018701.1 vs. NCBI nr
Match: XP_038890973.1 (pre-mRNA-splicing factor 38 [Benincasa hispida])

HSP 1 Score: 671.0 bits (1730), Expect = 6.4e-189
Identity = 371/409 (90.71%), Postives = 389/409 (95.11%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKLADGCF+L+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+ SLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFALSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EP+ND+LED+ H+KNYYRGRSP RERDRDRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRE----RDRDRDRDRDRDRDRDRDRDRDRDRY 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDRE    RDRDRDRDRDRDRDRDRDRDRDRDR+
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRDRH 300

Query: 301 CLRDEKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSP 360
            LRDEKEYGRDRDREREGRERERRDRDRGRRRS S+SRSRSKDREDGE+RKRH+RSSVSP
Sbjct: 301 RLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSKSRSRSKDREDGEYRKRHSRSSVSP 360

Query: 361 RRRDAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           RRRD AEDR+EP+KKKEKKEKK A AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 RRRDGAEDREEPRKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 403

[Close]

BLAST of Sed0018701.1 vs. NCBI nr
Match: XP_031737285.1 (pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein Csa_021262 [Cucumis sativus])

HSP 1 Score: 668.3 bits (1723), Expect = 4.2e-188
Identity = 370/407 (90.91%), Postives = 386/407 (94.84%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKLADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRWTLES  SLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EP+ND+LED+ H+KNYYRGRSP RERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240

Query: 241 RDRDYDR--DRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCL 300
           RDRDYDR  DRD  R  +RDR R R+RDRDRERDRDRDRDRDRDRDRDRDRDRDRDRY L
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRL 300

Query: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRR 360
           RDEKEYGRDRDREREGRERERRDRDRGRRRS SRSRSRSKDREDGE+RKRH+RSSVSPRR
Sbjct: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRR 360

Query: 361 RDAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           RD AEDR+EPKKKKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 RDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 407

[Close]

BLAST of Sed0018701.1 vs. NCBI nr
Match: XP_022937574.1 (pre-mRNA-splicing factor 38-like [Cucurbita moschata] >XP_022937575.1 pre-mRNA-splicing factor 38-like [Cucurbita moschata])

HSP 1 Score: 667.2 bits (1720), Expect = 9.3e-188
Identity = 370/406 (91.13%), Postives = 382/406 (94.09%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
            GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LEST SLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED+EP+NDALEDE H+KNYYRGRSP RERD+DRR DSHRH      
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRHDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDR+RDRDRDRDRDRDR RDRDRDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRD-RGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRR 360
           +KEY RDRDREREGRERERRDRD  GRRRS SRSRSRSKDREDGE+RKRHARSS SPRRR
Sbjct: 301 DKEYSRDRDREREGRERERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRR 360

Query: 361 DAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           D AEDRDEPK+KKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 DGAEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 400

[Close]

BLAST of Sed0018701.1 vs. NCBI nr
Match: KAG6586235.1 (Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 666.0 bits (1717), Expect = 2.1e-187
Identity = 372/407 (91.40%), Postives = 384/407 (94.35%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
            GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LEST SLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED+EP+NDALEDE H+KNYYRGRSP RERD+DRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDR+RDRDRDRDRDRDR RDRDRDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRD-RGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRR 360
           +KEY RDRDREREGRERERRDRD  GRRRS SRSRSRSKDREDGE+RKRHARSS SPRRR
Sbjct: 301 DKEYSRDRDREREGRERERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRR 360

Query: 361 DAAEDRDEPKKKKEKKEKKV-AAAGEEDPEIAEWNRIRATLGLAPLK 406
           D AEDRDEPK+KKEKKEKK   AAGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 DGAEDRDEPKRKKEKKEKKEGGAAGEEDPEIAEWNRIRASLGLAPLK 401

[Close]

BLAST of Sed0018701.1 vs. NCBI nr
Match: XP_008453888.1 (PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo])

HSP 1 Score: 663.7 bits (1711), Expect = 1.0e-186
Identity = 366/405 (90.37%), Postives = 384/405 (94.81%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKL+DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+ SLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EP+ND+LED+ H+KNYYRGRSP RERDRDRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDRE  RDRDR+RDRDRDR+R+RDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRE--RDRDRERDRDRDRERERDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRRD 360
           EKEYGRDRDREREGRERERRDRDRGRRRS SRSRSRSKDREDGE+RKRH+RSSVSPRRRD
Sbjct: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRD 360

Query: 361 AAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
             EDR+EPKKKKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 GVEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 7.2e-127
Identity = 279/408 (68.38%), Postives = 310/408 (75.98%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+TFWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           FGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVRILGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRK+R+KL+DG FSLTHVDEVI+ELLTKDYSCDIA+PR+KKRWTLE    L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSP--ARERDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKE+ E + D  EDE       R +SP   RERDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YDRDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCL 300
           Y  DRDYD DRD+DRDY+R+RG G  RDRDRERDRD  R+RDRDR+R RDR+RDR     
Sbjct: 241 Y--DRDYDMDRDHDRDYERERGHG--RDRDRERDRDHYRERDRDRERGRDRERDR----- 300

Query: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRR 360
                                  RDR RRRS SRSR           RKRH         
Sbjct: 301 -----------------------RDRARRRSRSRSRD----------RKRH--------E 354

Query: 361 RDAAEDRDEPKKKKEKKEK-KVAAAGEEDPEIAEWNRIRATLGLAPLK 406
            D   DR+EPKKKKEKKEK K       +PEIAE NR+RA+LG+ PL+
Sbjct: 361 TDDVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot
Match: Q7JVL3 (Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.4e-67
Identity = 179/335 (53.43%), Postives = 231/335 (68.96%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   AK++ GTNPQ L+EKI+RS+IY + +WKEQCF LTAE LVDKAMEL  +GG 
Sbjct: 1   MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGN KPT F+CL +KMLQIQPEK+IV+EFIKNE++KYVR LGAFYLRLTG  +D Y+YL
Sbjct: 61  YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLY D RKLRR+   G F + ++DE IDELL  D  CDI LPR++KR  LE  + +  +
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query: 181 KSALEDDFEEE--EEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRR-----DSHR 240
            S L++D ++E   ++E  +  N   E+    +   R RS +R R R+R R     +S R
Sbjct: 181 VSVLDEDLDDELPSDEEKADETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSAR 240

Query: 241 HRD-----RDYDRDRDYDRDRD-YDRDYDRDRGRGRERDRDRER-DRDRDRDRDRDRDRD 300
            RD      DYDR R+  R+RD ++ DYDR +  GR  DR+RER DRD  R+R+RD DRD
Sbjct: 241 SRDYYDELEDYDRQRNRVRNRDTHNEDYDRRQNNGR-HDRERERQDRDSIRERERDGDRD 300

Query: 301 RDRDRDRDRYCLRDEKEYGRDRDREREGR-ERERR 321
           R RDR+R+R     E++ GR   RER+ R ER+RR
Sbjct: 301 R-RDRERER-----ERDRGRHDQRERDSRGERDRR 328

[Close]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot
Match: Q6DHU4 (Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-59
Identity = 161/328 (49.09%), Postives = 207/328 (63.11%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ +WKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT VD Y+YL
Sbjct: 61  YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR  LE    L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180

Query: 181 KSALEDDFEE----EEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRD 240
            SALE+D +E    EEE ++ E        E H ++Y       R+ DR RR  S R+R 
Sbjct: 181 ISALEEDLDEVETSEEEDDEDEKPERMQSPEPHRRSY-------RDMDRPRRSPSPRYRR 240

Query: 241 RDYDRDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRY 300
               R R     R       R     RERDRDR R +   R R R R+R R R +    +
Sbjct: 241 SRSPRRRSRSPKR-------RSPSPRRERDRDRHRSKSPRRHRSRSRER-RHRSKSPGHH 300

Query: 301 CLRDEKEYGRD-RDREREGRERERRDRD 324
                + + +    R ++  +R RR  +
Sbjct: 301 RSHRHRSHSKSPESRSKKSHKRSRRGNE 313

[Close]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot
Match: Q4FK66 (Pre-mRNA-splicing factor 38A OS=Mus musculus OX=10090 GN=Prpf38a PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-59
Identity = 158/331 (47.73%), Postives = 206/331 (62.24%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ +WKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE I ELL  +  CDI LPR++KR+ LE    L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALE---DENHDKNYYRG-----RSPARERDRDRRRDSH 240
            SALE+D ++ E  E+ E  ++ LE     +H +  YR      RSPA    R R R S 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPALRYRRSRSR-SP 240

Query: 241 RHRDRDYDRDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRD 300
           R R R   R               R     RER R +   R R R RDR   R R R + 
Sbjct: 241 RRRSRSPKR---------------RSPSPRRERHRSKSPRRHRSRSRDR---RHRSRSKS 300

Query: 301 RDRYCLRDEKEYGRDRDREREGRERERRDRD 324
              +     + + +  +R ++  ++ RR  +
Sbjct: 301 PGHHRSHRHRSHSKSPERSKKSHKKSRRGNE 312

[Close]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot
Match: Q4FZQ6 (Pre-mRNA-splicing factor 38A OS=Xenopus laevis OX=8355 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.3e-58
Identity = 166/345 (48.12%), Postives = 208/345 (60.29%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ +WKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR LGA Y+RLTGT  D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRK++ +  DG F L HVDE ID+LL ++  CD+ LPR++KR+ LE T  L  R
Sbjct: 121 EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
            SALE+D ++ E  E         E+E+ D+   +GR P+ E         HR   RD D
Sbjct: 181 VSALEEDMDDVESSE---------EEEDDDE---KGRDPSPEH--------HRRNYRDLD 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           R R     R Y R   R   R R R   R       R+R R +   R R R R+R     
Sbjct: 241 RPRRSPSPR-YRRSRSRS-PRRRSRSPKRRSPSPPRRERHRSKSPRRHRSRSRERRHRSK 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSPSRS-RSRSKDREDGE 345
            K  G  R             R R   +SP RS +S  K R   E
Sbjct: 301 SKSPGHHRSH-----------RHRSHSKSPERSKKSHKKSRRGNE 312

[Close]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL
Match: A0A6J1FBK8 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 SV=1)

HSP 1 Score: 667.2 bits (1720), Expect = 4.5e-188
Identity = 370/406 (91.13%), Postives = 382/406 (94.09%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
            GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LEST SLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED+EP+NDALEDE H+KNYYRGRSP RERD+DRR DSHRH      
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRHDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDR+RDRDRDRDRDRDR RDRDRDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRD-RGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRR 360
           +KEY RDRDREREGRERERRDRD  GRRRS SRSRSRSKDREDGE+RKRHARSS SPRRR
Sbjct: 301 DKEYSRDRDREREGRERERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRR 360

Query: 361 DAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           D AEDRDEPK+KKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 DGAEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 400

[Close]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL
Match: A0A1S3BXB0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 5.0e-187
Identity = 366/405 (90.37%), Postives = 384/405 (94.81%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKL+DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+ SLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EP+ND+LED+ H+KNYYRGRSP RERDRDRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERDRDRE  RDRDR+RDRDRDR+R+RDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRE--RDRDRERDRDRDRERERDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRRD 360
           EKEYGRDRDREREGRERERRDRDRGRRRS SRSRSRSKDREDGE+RKRH+RSSVSPRRRD
Sbjct: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRD 360

Query: 361 AAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
             EDR+EPKKKKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 GVEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL
Match: A0A6J1G4M6 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 SV=1)

HSP 1 Score: 657.5 bits (1695), Expect = 3.6e-185
Identity = 366/409 (89.49%), Postives = 382/409 (93.40%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQN +WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLEST SLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED+EP+ND+LED+ H+KNYYRGRSP RERDRDRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDY+RDRD DRDYDRDRGRGRERDRDRE    RDRDRDRDRDRDRDRDRDRDRY LRD
Sbjct: 241 RDRDYERDRDNDRDYDRDRGRGRERDRDRE----RDRDRDRDRDRDRDRDRDRDRYHLRD 300

Query: 301 EKEYGRDRDREREG----RERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSP 360
           EKEYGRDRDREREG    RERERRDRDRGRRRS SRSRSRSKDREDGE+RKRH RSS+SP
Sbjct: 301 EKEYGRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISP 360

Query: 361 RRRDAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           RRR+ AEDR+EPK+KKEKKEKK   AGEEDPEIAEWNRIRA+LG+APLK
Sbjct: 361 RRRNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 399

[Close]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL
Match: A0A6J1HPQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 5.1e-184
Identity = 365/406 (89.90%), Postives = 377/406 (92.86%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
            GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LEST SLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED+EP+NDALEDE H+KNYYRGRSP RERD+DRRRDSHRH      
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRRDSHRH------ 240

Query: 241 RDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRD 300
           RDRDYDRDRDYDRDYDRDRGRGRERD    RDRDRDRDRDRDRDR RDRDRDRDRY LRD
Sbjct: 241 RDRDYDRDRDYDRDYDRDRGRGRERD----RDRDRDRDRDRDRDRGRDRDRDRDRYRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRD-RGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRRR 360
           +KEY RDRD EREGRERERRDRD  GRRRS SR+RSRSKDREDGE+RKRHAR S SPRRR
Sbjct: 301 DKEYSRDRDGEREGRERERRDRDHHGRRRSHSRNRSRSKDREDGEYRKRHARCSASPRRR 360

Query: 361 DAAEDRDEPKKKKEKKEKKVAAAGEEDPEIAEWNRIRATLGLAPLK 406
           D AEDRDEPK+KKEKKEKK   AGEEDPEIAEWNRIRA+LGLAPLK
Sbjct: 361 DGAEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 396

[Close]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL
Match: A0A6J1DS16 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111023319 PE=3 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 7.7e-180
Identity = 366/418 (87.56%), Postives = 382/418 (91.39%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AKSIRGTNPQNLVEKILRSKIYQNT+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIA+PRVKKRWTLEST  LPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIAMPRVKKRWTLESTGLLPAR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKED E LND LEDE H+KN+YRGRSP RERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEDAEALND-LEDEIHEKNHYRGRSPGRERDRDRRRDSHRHRDRDYD 240

Query: 241 RDRDYDRDRDYD------RDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRD 300
           RDRDYDRD D D      RD DR+R R R+R+RDR+RDRDRDRDRDRDRDR+RDRDRDRD
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRERDRDRDRD 300

Query: 301 RYCLRDEKEYGRDRDREREGRERER--RDRDRGRRRSPSRSRSRSKDREDGEHRKRHARS 360
           RY LRDEKEYGRDR+REREGRER+R  RDRDRGRRRS SRSRSRSKDREDGEHRKRHARS
Sbjct: 301 RYRLRDEKEYGRDREREREGRERDRRDRDRDRGRRRSHSRSRSRSKDREDGEHRKRHARS 360

Query: 361 SVSPRRRDAAEDRDEPKKKKEKKEKKV-----AAAGEEDPEIAEWNRIRATLGLAPLK 406
           S SPRRRD AED DEPK+KKEKKEK+       A   EDPEIAEWNRIRA+LG+APLK
Sbjct: 361 SASPRRRDGAEDIDEPKRKKEKKEKEKEKKENGAGVAEDPEIAEWNRIRASLGMAPLK 417

[Close]

BLAST of Sed0018701.1 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 455.3 bits (1170), Expect = 5.2e-128
Identity = 279/408 (68.38%), Postives = 310/408 (75.98%), Query Frame = 0


Query: 1   MANRTDPTAKSIRGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+TFWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYL 120
           FGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVRILGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTSSLPAR 180
           EPLYNDYRK+R+KL+DG FSLTHVDEVI+ELLTKDYSCDIA+PR+KKRWTLE    L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEDIEPLNDALEDENHDKNYYRGRSP--ARERDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKE+ E + D  EDE       R +SP   RERDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YDRDRDYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCL 300
           Y  DRDYD DRD+DRDY+R+RG G  RDRDRERDRD  R+RDRDR+R RDR+RDR     
Sbjct: 241 Y--DRDYDMDRDHDRDYERERGHG--RDRDRERDRDHYRERDRDRERGRDRERDR----- 300

Query: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSPSRSRSRSKDREDGEHRKRHARSSVSPRR 360
                                  RDR RRRS SRSR           RKRH         
Sbjct: 301 -----------------------RDRARRRSRSRSRD----------RKRH--------E 354

Query: 361 RDAAEDRDEPKKKKEKKEK-KVAAAGEEDPEIAEWNRIRATLGLAPLK 406
            D   DR+EPKKKKEKKEK K       +PEIAE NR+RA+LG+ PL+
Sbjct: 361 TDDVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]

BLAST of Sed0018701.1 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 46.2 bits (108), Expect = 7.2e-05
Identity = 81/178 (45.51%), Postives = 106/178 (59.55%), Query Frame = 0


Query: 203 ALEDENHDKNY-------YRGRSPARERDRDRRRDSHRHRDRDYDRDRDYDRDRDYDRDY 262
           A+  ENH++NY       +   S +RE   D ++DS +  ++D +  RD D ++D DR+ 
Sbjct: 12  AISTENHNENYISLESSPFHEDSKSRE-SHDLKKDSSKISEKDNENGRDKDGNKDRDREK 71

Query: 263 DRDRGRGRERDRDRERDRDRDRDRDRDRDRDR-DRDRDRDRYCLRDEKEYGRDRDREREG 322
           DRDR + R+RDR++ RDRDRDR+R +DR RDR  RDR RDR   R EK    D D  R  
Sbjct: 72  DRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHRRS 131

Query: 323 RERER---RDRD---RGRRRSPSRSRSRSKDREDGEHR-KRHARSSVSPRRRDAAEDR 366
           R+R+R   RDRD   R RRRS SRSRSRS+ R   EHR K   RS    R R  ++ R
Sbjct: 132 RDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRR 188

[Close]

BLAST of Sed0018701.1 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 3.6e-04
Identity = 100/340 (29.41%), Postives = 155/340 (45.59%), Query Frame = 0


Query: 18  QNLVEKILRSKIYQNTFWKEQCFGL-TAETLVDKAM-ELDHLGGTFGGN-RKPTPFMCLV 77
           ++L+EK+L   I  + ++KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFSPG- 131

Query: 138 ADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTS-----SLPARKSALEDDFE 197
           ++G   +T +   + +LL   Y  D   PR+      +  S     +LP + S    D  
Sbjct: 132 SNG--RMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMT 191

Query: 198 EEEEKEDIEP------LNDALEDENHDKNYYRGRSPARERDRDRRRDSHRHRDRDYDRDR 257
              E     P      L+ +       +   RG SP R           R     YDR+ 
Sbjct: 192 RGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-----------RPPPTGYDRN- 251

Query: 258 DYDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYCLRDEKE 317
                     D  + R   R + RD   DRD DR R+R+R++DR+R+R RDRY  R E++
Sbjct: 252 --------GGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRER-ERD 311

Query: 318 YGRDRDREREGRERERR-----DRDRGRRRSPSRSRSRSK 339
           YG DR   R+   R RR     DR R  RRS SRSRSRS+
Sbjct: 312 YGNDRRSRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSR 326

The following BLAST results are available for this feature:

BLAST of Sed0018701.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890973.1	6.4e-189	90.71	pre-mRNA-splicing factor 38 [Benincasa hispida]	[more]
XP_031737285.1	4.2e-188	90.91	pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein...	[more]
XP_022937574.1	9.3e-188	91.13	pre-mRNA-splicing factor 38-like [Cucurbita moschata] >XP_022937575.1 pre-mRNA-s...	[more]
KAG6586235.1	2.1e-187	91.40	Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008453888.1	1.0e-186	90.37	PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo]	[more]

BLAST of Sed0018701.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB54	7.2e-127	68.38	Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1	[more]
Q7JVL3	8.4e-67	53.43	Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=...	[more]
Q6DHU4	1.7e-59	49.09	Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1	[more]
Q4FK66	2.2e-59	47.73	Pre-mRNA-splicing factor 38A OS=Mus musculus OX=10090 GN=Prpf38a PE=1 SV=1	[more]
Q4FZQ6	9.3e-58	48.12	Pre-mRNA-splicing factor 38A OS=Xenopus laevis OX=8355 GN=prpf38a PE=2 SV=1	[more]

BLAST of Sed0018701.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBK8	4.5e-188	91.13	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 S...	[more]
A0A1S3BXB0	5.0e-187	90.37	Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1	[more]
A0A6J1G4M6	3.6e-185	89.49	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 S...	[more]
A0A6J1HPQ9	5.1e-184	89.90	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=...	[more]
A0A6J1DS16	7.7e-180	87.56	Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111023319 PE=3 ...	[more]

BLAST of Sed0018701.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40650.1	5.2e-128	68.38	PRP38 family protein	[more]
AT1G60900.1	7.2e-05	45.51	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT5G37370.1	3.6e-04	29.41	PRP38 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 10..173 e-value: 3.6E-60 score: 202.9
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	PANTHER	PTHR23142:SF1	PRE-MRNA-SPLICING FACTOR 38A	coord: 1..397

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0018701	Sed0018701	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018701.1-three_prime_utr	Sed0018701.1-three_prime_utr-LG11:3781069..3781280	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3781069..3781794	exon
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3782877..3782947	exon
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3783040..3783169	exon
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3783543..3783633	exon
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3783742..3783863	exon
Sed0018701.1-exon	Sed0018701.1-exon-LG11:3784683..3785112	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3781281..3781794	CDS
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3782877..3782947	CDS
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3783040..3783169	CDS
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3783543..3783633	CDS
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3783742..3783863	CDS
Sed0018701.1-cds	Sed0018701.1-cds-LG11:3784683..3784972	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018701.1-five_prime_utr	Sed0018701.1-five_prime_utr-LG11:3784973..3785112	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0018701.1	Sed0018701.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome