Sed0017999.1 (mRNA) Chayote v1

Overview


Name	Sed0017999.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 2065984 .. 2066508 (-)
Sequence length	525
RNA-Seq Expression	Sed0017999.1
Synteny	Sed0017999.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCAAATTTCTTTCTTCAATGGCAAATCTTAAATTGGTTTTTGTTTTTGCTTTAATTCTTTCCTTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGCTGCGCAGCCGATCTCTTTCAGCCGCGCCGGAGTGGAAACTTGACATCCCGGCGGACCCAGCGGCGACGCTGTCGACGGAGTATGGGCCTTTACTTCTGGGATTTTTGCCGAAAGGGGGAATTCCGCCGTCGGGGCCAAGCAAGGGGACCAACGACGTCAACAGTTAGTTTTATCTGTGTGTTTGGGTTTGTGCGATCCTAATTATTTGTTATTATGTAAAGTGTAAATACTCATTAAATAGTTGTGGACATTTCATTCATTCTTTTCATTTTCATCCTGCAATTGTTTGTAATATTAATATACGGATAAACTTCCATGTTATTGCTTCCAACTATTTGAATTTTGAAGTATGTTTCCTTCGTAATCTCAAGTTCGACATGTACTTGTAATATTACTGTTTATTTAATATGAAATAAATTATCACGAG

mRNA sequence

TCTCAAATTTCTTTCTTCAATGGCAAATCTTAAATTGGTTTTTGTTTTTGCTTTAATTCTTTCCTTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGCTGCGCAGCCGATCTCTTTCAGCCGCGCCGGAGTGGAAACTTGACATCCCGGCGGACCCAGCGGCGACGCTGTCGACGGAGTATGGGCCTTTACTTCTGGGATTTTTGCCGAAAGGGGGAATTCCGCCGTCGGGGCCAAGCAAGGGGACCAACGACGTCAACAGTTAGTTTTATCTGTGTGTTTGGGTTTGTGCGATCCTAATTATTTGTTATTATGTAAAGTGTAAATACTCATTAAATAGTTGTGGACATTTCATTCATTCTTTTCATTTTCATCCTGCAATTGTTTGTAATATTAATATACGGATAAACTTCCATGTTATTGCTTCCAACTATTTGAATTTTGAAGTATGTTTCCTTCGTAATCTCAAGTTCGACATGTACTTGTAATATTACTGTTTATTTAATATGAAATAAATTATCACGAG

Coding sequence (CDS)

ATGGCAAATCTTAAATTGGTTTTTGTTTTTGCTTTAATTCTTTCCTTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGCTGCGCAGCCGATCTCTTTCAGCCGCGCCGGAGTGGAAACTTGACATCCCGGCGGACCCAGCGGCGACGCTGTCGACGGAGTATGGGCCTTTACTTCTGGGATTTTTGCCGAAAGGGGGAATTCCGCCGTCGGGGCCAAGCAAGGGGACCAACGACGTCAACAGTTAG

Protein sequence

MANLKLVFVFALILSFSVSSSSSARLLRSRSLSAAPEWKLDIPADPAATLSTEYGPLLLGFLPKGGIPPSGPSKGTNDVNS

Homology

[Close]

BLAST of Sed0017999.1 vs. NCBI nr
Match: KAG6602588.1 (hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 61/87 (70.11%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MANL----KLVFVFALILSFSVSSSSSARLLRSRSLS--AAPEWKLDIPADPAATLSTEY 60
          MANL    K + V ALILS SVSSSSSARLLR  SLS  A P+ KLD PAD    L+ EY
Sbjct: 1  MANLFKLSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADHTTALAVEY 60

Query: 61 GPLLLGFLPKGGIPPSGPSKGTNDVNS 82
          G LLLGFLPKGGIPPSGPSKGTN++NS
Sbjct: 61 GALLLGFLPKGGIPPSGPSKGTNNLNS 87

[Close]

BLAST of Sed0017999.1 vs. NCBI nr
Match: KAG6578478.1 (hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 5  KLVFVFALILSFSVSSSSSARLLRSRSLSAA-PEWKLDIPADPAATLSTEYGPLLLGFLP 64
          KL FVFA+IL F  +SSSSARLLR +SLSAA PE KLDIP    A LS EYGPL+LGFLP
Sbjct: 9  KLFFVFAVIL-FISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYGPLILGFLP 68

Query: 65 KGGIPPSGPSKGTNDVNS 82
          KG IPPSGPSKGTND N+
Sbjct: 69 KGRIPPSGPSKGTNDFNT 81

[Close]

BLAST of Sed0017999.1 vs. NCBI nr
Match: KGN45830.1 (hypothetical protein Csa_005505 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 8  FVFALILSFSVSSSSSARLLRSRSLSAAPEWKLDIPADPAATLSTEYGPLLLGFLPKGG- 67
          F+F LIL  SV SSSSARLLR +SLS  P  KLDIPADPAA   TEY  LLLGFLPKGG 
Sbjct: 13 FLFTLILLISV-SSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYESLLLGFLPKGGS 72

Query: 68 IPPSGPSKGTNDVNS 82
          IPPSGPSKGTN+ N+
Sbjct: 73 IPPSGPSKGTNNFNT 84

[Close]

BLAST of Sed0017999.1 vs. NCBI nr
Match: CAB4271074.1 (unnamed protein product [Prunus armeniaca] >CAB4301512.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 42  IPADP--AATLSTEYGPLLLGFLPKGGIPPSGPSKGTNDVNS 82
           +PA P   A  + +YGPL+L  LPKG  PPSGPSKGTNDVN+
Sbjct: 78  LPAAPRFGAAAAAKYGPLVLNLLPKGTNPPSGPSKGTNDVNT 119

[Close]

BLAST of Sed0017999.1 vs. NCBI nr
Match: XP_028778859.1 (uncharacterized protein LOC114735338 [Prosopis alba])

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 53 EYGPLLLGFLPKGGIPPSGPSKGTNDVNS 82
          +YGPL+L  LPKGG+PPSGPSKGTN+VN+
Sbjct: 71 KYGPLVLNMLPKGGVPPSGPSKGTNNVNN 99

[Close]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL
Match: A0A0A0K7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 8  FVFALILSFSVSSSSSARLLRSRSLSAAPEWKLDIPADPAATLSTEYGPLLLGFLPKGG- 67
          F+F LIL  SV SSSSARLLR +SLS  P  KLDIPADPAA   TEY  LLLGFLPKGG 
Sbjct: 13 FLFTLILLISV-SSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYESLLLGFLPKGGS 72

Query: 68 IPPSGPSKGTNDVNS 82
          IPPSGPSKGTN+ N+
Sbjct: 73 IPPSGPSKGTNNFNT 84

[Close]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL
Match: A0A6J5U6R1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17412 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 42  IPADP--AATLSTEYGPLLLGFLPKGGIPPSGPSKGTNDVNS 82
           +PA P   A  + +YGPL+L  LPKG  PPSGPSKGTNDVN+
Sbjct: 78  LPAAPRFGAAAAAKYGPLVLNLLPKGTNPPSGPSKGTNDVNT 119

[Close]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL
Match: A0A7J0GW62 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-04
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 6  LVFVFALILSFSVSSSSSARLLRSRS---LSAAPEWKLDIPADPAAT----LSTEYGPLL 65
          L     L +   +S SSSARLL+  S       P    D P + A      L + YGPL 
Sbjct: 7  LCLTATLFIFLIISQSSSARLLKDSSHPCKMGQPTMSFD-PMELAVAEPKRLRSRYGPLF 66

Query: 66 LGFLPKGGIPPSGPSKGTNDVNS 82
          L  LPKG +PPSGPSKGTN++N+
Sbjct: 67 LSMLPKGSVPPSGPSKGTNNMNN 88

[Close]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL
Match: M5XE75 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G262900 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 42  IPADP--AATLSTEYGPLLLGFLPKGGIPPSGPSKGTNDVNS 82
           +PA P   A  + +YGPL+L  LPKG  PPSGPSKGTND+N+
Sbjct: 78  LPAAPRFGAAAAAKYGPLVLNLLPKGTNPPSGPSKGTNDLNT 119

[Close]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL
Match: A0A5E4ES54 (PREDICTED: glysoja_038315 OS=Prunus dulcis OX=3755 GN=ALMOND_2B021435 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 42  IPADP--AATLSTEYGPLLLGFLPKGGIPPSGPSKGTNDVNS 82
           +PA P   A  + +YGPL+L  LPKG  PPSGPSKGTND+N+
Sbjct: 78  LPAAPRFGAAAAAKYGPLVLNLLPKGTNPPSGPSKGTNDLNT 119

The following BLAST results are available for this feature:

BLAST of Sed0017999.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602588.1	4.1e-18	70.11	hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6578478.1	5.0e-16	74.36	hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45830.1	2.1e-14	73.33	hypothetical protein Csa_005505 [Cucumis sativus]	[more]
CAB4271074.1	7.4e-04	61.90	unnamed protein product [Prunus armeniaca] >CAB4301512.1 unnamed protein product...	[more]
XP_028778859.1	7.4e-04	75.86	uncharacterized protein LOC114735338 [Prosopis alba]	[more]

BLAST of Sed0017999.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017999.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7U2	1.0e-14	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1	[more]
A0A6J5U6R1	3.6e-04	61.90	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17412 PE=4 S...	[more]
A0A7J0GW62	4.7e-04	43.37	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1	[more]
M5XE75	8.0e-04	59.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G262900 PE=4 SV=1	[more]
A0A5E4ES54	8.0e-04	59.52	PREDICTED: glysoja_038315 OS=Prunus dulcis OX=3755 GN=ALMOND_2B021435 PE=4 SV=1	[more]

BLAST of Sed0017999.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0017999	Sed0017999	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017999.1-exon	Sed0017999.1-exon-LG03:2065984..2066508	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017999.1-three_prime_utr	Sed0017999.1-three_prime_utr-LG03:2065984..2066243	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017999.1-cds	Sed0017999.1-cds-LG03:2066244..2066489	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017999.1-five_prime_utr	Sed0017999.1-five_prime_utr-LG03:2066490..2066508	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0017999.1	Sed0017999.1-protein	polypeptide