Sed0016712.1 (mRNA) Chayote v1

Overview


Name	Sed0016712.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Calcium load-activated calcium channel
Location	LG12: 9427609 .. 9429176 (+)
Sequence length	1005
RNA-Seq Expression	Sed0016712.1
Synteny	Sed0016712.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAATCCCTCTCTTCTCCTCCTTCCGATACGCCGACGGCCTCACGGTGGTCGGAATCTCCATCTGCACCGCCGTCTTCTGCGAGGCCATATCCTGGCTTCTCATCTACCGCACCAGCTCCTACAAAACCCTCCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAAACCATGAAAACCACCGACGCCTCCAAAATCACCGCCAAGAAGTCCAAGACCAAGAAGATCGACCGCGTCGAGACCAGCCTCAAGGAATCCAGCCGCGACCTCTCCCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTCCTCTTCGTCGTCTTCGGACTCCTCAACTCCCTCTTCGAAGGCAAGGTCGTGGCCAGATTGCCGTTCAAGCCGTTTGACCTTGTGATGAAGATGAGCCACCGAGGGCTACAGGGCGACGATCCCACTGATTGCGCCATGGCGTTTCTGTATTTCCTTTGTTCGATTAGTATCAGGACTAATCTCCAGAAGTTCTTGGGATTCTCGCCGCCTAGAGGCGCCGGCGCCGGCGCTGGCCTGTTCCCGATGCCGGATCCGAAGACGAATTGATTTAGGTTTGGCCTGAAATTGAATCAAATTTATGCTCATTTCCTCTTACTTTGATAGTTTGATTATGAATTTTTCGTTTGTTTAGAGTTCTATTTGATAATTATATAGTGACTTCATCGGACTTAGAGTAGCTATATTGTTTCTGAAAATTTGAGAAGGTGATTCTGGTTCTAATCTTCACTTGTAGTCTTGGTTAGATTTGGGAATAATGCTATCTTTTTTGGGATCAATATAAGCTTTTGATCTTTGAAAACTTTGATTACGTTCAATGATGTAACTGTGAGTTCTGCTGGCTGTTGATCACTAATTTTTTTGAGCCATGTTGCCATTTTCTCCAGTTCAAGCTTTCTTTACTTGTTTGATTTGTTGTGCAAATTGCTTTTCCGTTCGAGTTTCTTAGCATACCAAACATTTTGCCATTACATGAACTTTAATTTTTTTAATTTAGAATGTATCTACTCGCCAAAGTGAACGTAGCTCATCCAACAACCCGATTGTATTAAGAACTATGAGGTATGTGGTTTCAATCTTTCAAATTTAGCATGTATTTATTTGTAGATACCTCTCGTGTTTCTATTCTTTCAATGCCTCCTGGTGTCTGGCCTAAGAATTGGCGTGGTTATCCTATTATAGTGAAGTAACAAGAACATATGAGAATCCCCAAGGGGTGACACAGTGGTTGAAGAGACTAGGGCTTTGAAGGTATGTTCCCTTCCAGGTTTTGAGTTCGAGACTCATCTATGACATTACTTCTTCGATGTCTCTCCGGTATCTGACCTAGGGACGGGTGTGGTTATCTTGTTTCAAAAAAAAAAAAAAACAAGAACAGTTGTACTACTTTTGATTATGATGATCTAGCAGTTCTAAGTACAGTTGATATGGTTGTTGAGGGTTAACCAAAATTTGGTTTCCAGGTGGAGTTTGTGGATGTAGTTGCTGATGTTGTTTGTCTAACAGTTTGAGTAAAGAACATATGGTTGAGG

mRNA sequence

ATGGCAACAATCCCTCTCTTCTCCTCCTTCCGATACGCCGACGGCCTCACGGTGGTCGGAATCTCCATCTGCACCGCCGTCTTCTGCGAGGCCATATCCTGGCTTCTCATCTACCGCACCAGCTCCTACAAAACCCTCCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAAACCATGAAAACCACCGACGCCTCCAAAATCACCGCCAAGAAGTCCAAGACCAAGAAGATCGACCGCGTCGAGACCAGCCTCAAGGAATCCAGCCGCGACCTCTCCCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTCCTCTTCGTCGTCTTCGGACTCCTCAACTCCCTCTTCGAAGGCAAGGTCGTGGCCAGATTGCCGTTCAAGCCGTTTGACCTTGTGATGAAGATGAGCCACCGAGGGCTACAGGGCGACGATCCCACTGATTGCGCCATGGCGTTTCTGTATTTCCTTTGTTCGATTAGTATCAGGACTAATCTCCAGAAGTTCTTGGGATTCTCGCCGCCTAGAGGCGCCGGCGCCGGCGCTGGCCTGTTCCCGATGCCGGATCCGAAGACGAATTGATTTAGAATGTATCTACTCGCCAAAGTGAACGTAGCTCATCCAACAACCCGATTGTATTAAGAACTATGAGTGAAGTAACAAGAACATATGAGAATCCCCAAGGGGTGACACAGTGGTTGAAGAGACTAGGGCTTTGAAGGTATGTTCCCTTCCAGGTTTTGAGTTCGAGACTCATCTATGACATTACTTCTTCGATGTCTCTCCGGTATCTGACCTAGGGACGGGTGTGGTTATCTTGTTTCAAAAAAAAAAAAAAACAAGAACAGTTGTACTACTTTTGATTATGATGATCTAGCAGTTCTAAGTACAGTTGATATGGTTGTTGAGGGTTAACCAAAATTTGGTTTCCAGGTGGAGTTTGTGGATGTAGTTGCTGATGTTGTTTGTCTAACAGTTTGAGTAAAGAACATATGGTTGAGG

Coding sequence (CDS)

ATGGCAACAATCCCTCTCTTCTCCTCCTTCCGATACGCCGACGGCCTCACGGTGGTCGGAATCTCCATCTGCACCGCCGTCTTCTGCGAGGCCATATCCTGGCTTCTCATCTACCGCACCAGCTCCTACAAAACCCTCCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAAACCATGAAAACCACCGACGCCTCCAAAATCACCGCCAAGAAGTCCAAGACCAAGAAGATCGACCGCGTCGAGACCAGCCTCAAGGAATCCAGCCGCGACCTCTCCCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTCCTCTTCGTCGTCTTCGGACTCCTCAACTCCCTCTTCGAAGGCAAGGTCGTGGCCAGATTGCCGTTCAAGCCGTTTGACCTTGTGATGAAGATGAGCCACCGAGGGCTACAGGGCGACGATCCCACTGATTGCGCCATGGCGTTTCTGTATTTCCTTTGTTCGATTAGTATCAGGACTAATCTCCAGAAGTTCTTGGGATTCTCGCCGCCTAGAGGCGCCGGCGCCGGCGCTGGCCTGTTCCCGATGCCGGATCCGAAGACGAATTGA

Protein sequence

MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPMPDPKTN

Homology

[Close]

BLAST of Sed0016712.1 vs. NCBI nr
Match: XP_022934300.1 (calcium load-activated calcium channel [Cucurbita moschata] >XP_022983111.1 calcium load-activated calcium channel [Cucurbita maxima] >XP_023527728.1 calcium load-activated calcium channel [Cucurbita pepo subsp. pepo] >KAG6580794.1 Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017545.1 Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.4 bits (882), Expect = 6.6e-91
Identity = 180/194 (92.78%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD SKI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180

Query: 181 AGAGLFPMPDPKTN 195
           A AGLFPMPDPKTN
Sbjct: 181 AAAGLFPMPDPKTN 193

[Close]

BLAST of Sed0016712.1 vs. NCBI nr
Match: KAG6596248.1 (Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027791.1 Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTA+ CEAISWLLIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKIT KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. NCBI nr
Match: XP_022151350.1 (calcium load-activated calcium channel-like [Momordica charantia])

HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90
Identity = 180/194 (92.78%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTAV CEAISWLLIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKI+ KKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. NCBI nr
Match: XP_038903426.1 (calcium load-activated calcium channel-like [Benincasa hispida])

HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90
Identity = 180/194 (92.78%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIP FSSFRY+D LTVVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPFFSSFRYSDSLTVVGISVCTAVVCEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKIT KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. NCBI nr
Match: XP_004136557.1 (calcium load-activated calcium channel [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D L+VVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKIT KKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot
Match: Q3T0N3 (Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 9   SFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKI 68
           S  +AD L +V IS+CTA+  E I+W+L+YRT  YK L++ ++K +KKLE  K T     
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 61

Query: 69  TAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPF 128
           +A + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVA+LPF
Sbjct: 62  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 121

Query: 129 KPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPM 188
            P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  
Sbjct: 122 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 181

Query: 189 PDP 192
           P P
Sbjct: 182 PPP 182

[Close]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot
Match: Q9UM00 (Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 9   SFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKI 68
           S  +AD L +V IS+CTA+  E I+W+L+YRT  YK L++ ++K +KKLE  K T     
Sbjct: 53  STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 112

Query: 69  TAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPF 128
           +A + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVA+LPF
Sbjct: 113 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 172

Query: 129 KPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPM 188
            P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  
Sbjct: 173 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 232

Query: 189 PDP 192
           P P
Sbjct: 233 PPP 233

[Close]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot
Match: Q921L3 (Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 9   SFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKI 68
           S  +AD L +V IS+CTA+  E I+W+L+YRT  YK L++ ++K +KKLE  K T     
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 61

Query: 69  TAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPF 128
           +A + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVA+LPF
Sbjct: 62  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 121

Query: 129 KPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPM 188
            P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  
Sbjct: 122 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 181

Query: 189 PDP 192
           P P
Sbjct: 182 PPP 182

[Close]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot
Match: C5HGF3 (Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 9   SFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKI 68
           S  +AD L +V IS+CTA+  E I+W+L+YRT  YK L++ ++K +KKLE  K T     
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 61

Query: 69  TAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPF 128
           +A + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVA+LPF
Sbjct: 62  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 121

Query: 129 KPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPM 188
            P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  
Sbjct: 122 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 181

Query: 189 PDP 192
           P P
Sbjct: 182 PPP 182

[Close]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot
Match: Q5R9B0 (Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 9   SFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKTTDASKI 68
           S  +AD L +V IS+CTA+  E I+W+L+YRT  YK L++ ++K +KKLE  K T     
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 61

Query: 69  TAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVARLPF 128
           +A + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVA+LPF
Sbjct: 62  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 121

Query: 129 KPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGAGLFPM 188
            P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  
Sbjct: 122 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 181

Query: 189 PDP 192
           P P
Sbjct: 182 PPP 182

[Close]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL
Match: A0A6J1J172 (Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC111481756 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 180/194 (92.78%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD SKI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180

Query: 181 AGAGLFPMPDPKTN 195
           A AGLFPMPDPKTN
Sbjct: 181 AAAGLFPMPDPKTN 193

[Close]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL
Match: A0A6J1F7A5 (Calcium load-activated calcium channel OS=Cucurbita moschata OX=3662 GN=LOC111441504 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 180/194 (92.78%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD SKI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180

Query: 181 AGAGLFPMPDPKTN 195
           A AGLFPMPDPKTN
Sbjct: 181 AAAGLFPMPDPKTN 193

[Close]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL
Match: A0A0A0LGX0 (Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G799650 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D L+VVGIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKIT KKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL
Match: A0A6J1DAX6 (Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC111019313 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 180/194 (92.78%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTVVGIS+CTAV CEAISWLLIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKI+ KKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL
Match: A0A5A7TQC2 (Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005230 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.9e-90
Identity = 178/194 (91.75%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRY+D LTV+GIS+CTAV CEAISW+LIYRT+SYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTTDASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K TD+SKIT KKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  K-TDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120

Query: 121 KVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 180
           KVVA+LPFKPF LVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR  G
Sbjct: 121 KVVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPR--G 180

Query: 181 AGAGLFPMPDPKTN 195
           AGAGLFPMPDPKTN
Sbjct: 181 AGAGLFPMPDPKTN 191

[Close]

BLAST of Sed0016712.1 vs. TAIR 10
Match: AT3G12030.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-85
Identity = 162/193 (83.94%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 3   TIPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+YAD LTVVGIS CTA+ CEAISW+LIYRTSSYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  TD-ASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
            + +SK++ KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 182
           VVA+LPF P  +V KMSHRGL+GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 GAGLFPMPDPKTN 195
             GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of Sed0016712.1 vs. TAIR 10
Match: AT5G06660.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 311.6 bits (797), Expect = 4.4e-85
Identity = 164/196 (83.67%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MAT-IPLFSSFRYADGLTVVGISICTAVFCEAISWLLIYRTSSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+YAD LTVVGIS CTA+ CEAISW+LIYRTSSYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTTD-ASKITAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKT + +SK+T KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVARLPFKPFDLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVA+LPF P  +V KMSHRGL+GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 AGAGAGLFPMPDPKTN 195
           A    GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

The following BLAST results are available for this feature:

BLAST of Sed0016712.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934300.1	6.6e-91	92.78	calcium load-activated calcium channel [Cucurbita moschata] >XP_022983111.1 calc...	[more]
KAG6596248.1	1.5e-90	93.30	Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022151350.1	7.3e-90	92.78	calcium load-activated calcium channel-like [Momordica charantia]	[more]
XP_038903426.1	7.3e-90	92.78	calcium load-activated calcium channel-like [Benincasa hispida]	[more]
XP_004136557.1	7.3e-90	92.27	calcium load-activated calcium channel [Cucumis sativus]	[more]

BLAST of Sed0016712.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T0N3	1.0e-38	45.90	Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1	[more]
Q9UM00	1.0e-38	45.90	Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=...	[more]
Q921L3	1.0e-38	45.90	Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV...	[more]
C5HGF3	1.0e-38	45.90	Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1	[more]
Q5R9B0	1.0e-38	45.90	Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=...	[more]

BLAST of Sed0016712.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J172	3.2e-91	92.78	Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC1114817...	[more]
A0A6J1F7A5	3.2e-91	92.78	Calcium load-activated calcium channel OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A0A0LGX0	3.5e-90	92.27	Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G79965...	[more]
A0A6J1DAX6	3.5e-90	92.78	Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7TQC2	7.9e-90	91.75	Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0016712.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12030.1	1.2e-85	83.94	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	4.4e-85	83.67	Protein of unknown function DUF106, transmembrane	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Integral membrane protein EMC3/TMCO1-like	SMART	SM01415	DUF106_2	coord: 14..175 e-value: 2.7E-36 score: 136.6
IPR002809	Integral membrane protein EMC3/TMCO1-like	PFAM	PF01956	EMC3_TMCO1	coord: 17..174 e-value: 3.2E-30 score: 105.1
IPR008559	Calcium load-activated calcium channel	PIRSF	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..194 e-value: 9.5E-75 score: 248.3
IPR008559	Calcium load-activated calcium channel	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..193

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016712	Sed0016712	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016712.1-exon	Sed0016712.1-exon-LG12:9427609..9428198	exon
Sed0016712.1-exon	Sed0016712.1-exon-LG12:9428642..9428706	exon
Sed0016712.1-exon	Sed0016712.1-exon-LG12:9428827..9429176	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016712.1-cds	Sed0016712.1-cds-LG12:9427609..9428193	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016712.1-three_prime_utr	Sed0016712.1-three_prime_utr-LG12:9428194..9428198	three_prime_UTR
Sed0016712.1-three_prime_utr	Sed0016712.1-three_prime_utr-LG12:9428642..9428706	three_prime_UTR
Sed0016712.1-three_prime_utr	Sed0016712.1-three_prime_utr-LG12:9428827..9429176	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016712.1	Sed0016712.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
biological_process	GO:0070588	calcium ion transmembrane transport
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005262	calcium channel activity