Sed0016672.1 (mRNA) Chayote v1

Overview


Name	Sed0016672.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Ribonuclease H
Location	LG04: 25203048 .. 25207154 (-)
Sequence length	1152
RNA-Seq Expression	Sed0016672.1
Synteny	Sed0016672.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGAGAATATACGTCTGCTTAAAGAAAATCACACCTTAAAAACTCAAAATGAAAGGTTGCTAAAAAGAATTCGAAATTAAGAGAAAGAATCTTCAAGGCTCTTTATTGAAATGGACAAAATTGTAGCTGAGCAAAGGATACAACTCACTGAATTTGAAGAATTCAATGCTTCACTATGTCAAGCTCTAGACGAAATTCAGGCAAAACTGATAGAGCACCAAGAAGAGCATACAATTCAGGAAAATTACGCAAGATCAATCGAACATCATCTTTAGGGATATCAAAGAGCCAATGAACAGTTGTCATATAATTATGATCAATTGGAAAAGGAACGTATGACATTGAAAAGAGATTATGATCATGTGAAGATTAATTTGCAGGAGATTTTGAACAAAGTAAATGAGACTTTAGGCACAGTCCGAGGAATGGCTAAACGAGCTCGAGGCGTTGCATCTTAGGCGAAAGATCTTCGTGACAGTACTTCACCCAAGGCTTCAAATGCATATGAGTTTTATGAATTCTTGGGAGCAATTCGTAGAGACTTGGGATACTTTGGAAATTTTCATTAAGCATTATTTCGTTTTTCCATCTCTTATTCATTTTCATGTTATAATGTACTTTTGTTTTAACAAAGCAATAAAATTTCATTTATTTTATGTTGTTTTGTTCATATAATTCTAAAACTTTTTTTTAAAAATAAAAACAGTATAATCTTAAAATAGCTCGATCACCACGTATACAACGCACTCACGTCACGAGATACAAAAAAAGAATCATGGAAGAACAAAGTCTTGAAATAGAGAAATCGAGGAAGGATATAGAAGAACTTAAAGAAAAGATGAATGTTATCCTTACCATTTTAGAAAAGGAAAAAATGGCAGCAGATACTGAACAGTCTAGAAAGCCAGTGGATGATAATATGGGTCTCAACCATCAACCTCGTCAGATAGCAGATAATTACTAGCCGCAGTATGCGGCATATAGTCCAATGTTCAATGGTCCACCCGAACAAATGCAGTTTCCATTTCCCAATAGAGCGGAGCATGCCCCCACGAATGACCAAGCAAGGGTCCCAAACTCTAAAGATGGACCATCAAGGGTAACTACTAATGTTTCTGATCTTAATGTCCCGATGGTAAAAGATGAGTTGATTGAGGGTGAAAAGGCTTTATCCAGCGGAAAATTAGAGGTGTTGGAAGAAAGGTTGAGAGCAGTCGAAGACACTAATGTATTTGGAAACATCGATGCTACACAACTCTGTCTAGTACCCGATGTTGTCCTGCCAGCAAAATTTAAAGTGCCAGAGTTTGAAAAGTATGATGGAACGTCATGCCCCAAGAGTCACATTATAATGTACTACAGAAAGATGGAAGCATACGCCAACAATGATAAGTTGCTCATACATTGTTTCCAAGATAGCTTATCAGGCCTAGGTTCCCTTTGATACATTCACTTAGATGGTGTTCACGTTAGTACATGAAGAAATCTAGCAGACTCTTTTCTCAAGCAGGACAAACATAATATAGTCATGGCCCTAAGTTGGCTAGATCTACAGAGGATGGAAAAGAAGAGCACTGAGGGTTTTAAGGAATATGCACAAAGATGGAGGGACGTGGCAGCTCATGTTCACCCTCCCTTAACTAATAAAGAACTATCTGCTATGTTCATAAATAACCTTAAGTCTCCATTTTATGATCACATGATAGGGAGTGCTTCAACTAATTTCTCTACGAATCGGGGAAAGAATCGAGTATGGGATCAAACATGGTAGAATTGTTCGAACTCAAGAGTCATCGACAAAAAAAAGAACCTTTTCCAAAAAAGAAGGAAGAAGAGGTACATATGGTAGGGAGAGCAAATGGGTCATCTCAACGACCTCAACAATGGGCACCACAACAACCCTTGGGTTATCCATCTTCATATGGGTATTATCCATTTTAGGTGAATAATGCATCTATGCAATATGCTCCTTATGTGAATCAAGGTCCAAGATCTCAAACGAATCAAGGCTTTCAAGCTCAGAAGCAGCAACACACCATTGTTCCTGAATCTCAAGGCAATAGAACAACAAATAAACCTCAGTTTGATCTGATCCCCATGACGTATACTGAACTTCTGCCTTAGTTAATATAGAATCATCAATTGACGCCCAAACCTATGCCACTAATTTAACAGCCGTATCCATGGTGGTATGACCCCAATGCTCATTGTGATTATCATGCAGGGTCCATAGGACATTCAACTGAAAATTGCACTGCTTTGAAGTATACAATTCAAGACCTTATTAAGTCGGGATGGTTAAGCTTTAAAAAAGAAGACTCCCCTAATGTCAATAATAATCCTTTGCTAAATCATCTAGTGAATGCATTGATTGTCTAAGCAACGACAATAAACAGAATGTTAGGGATGTCATGACTCCCATGAGGCAACTTTTTGATATTCTTCTAGTAAATGGATACATCTTGACAAAATCGTCGCACTCAGAAGCTACTTGTGACAAATATAATGTCTACTTATCTTGTCCTTTTCATAGTGGGGCAAAAGGGCATACGTTGGATCAATGTTCTGAGTTTCATGAGAAAACCCAAGAGTTAATGAATTCAAGGCTTCTTACAGTTTCGCAAGCCTTTCACTTCACCACAGATGACAAAATATGTTCAGTGGAGCAGTTGTTGTCTGAAAAGAGTTTAAACCCATTTATGCAGCCGAAACCTTTAACAATAGTGTCCCACGAGAAGCCTGCTATACTTAGCAATATCCCAAAACCAATCACTATCCATGTGCCAGCCTCTTTTGAATATAAAAGCTTGAAAGCAGTACCATGGAGTTATGAGTACAAGGTGTCTATCAATACAGAAACGCCATCGCTTCCAATTAACAACATCACTGGAGTAGGAGGTTTGACACGAAGTGGGAGATGTTATACACCTGATCAATTGGTGAAACAAGTTGAAAATAAAGAGAAAGAACATAGGTTTGAAGGTGAGACTAGTATTCCCAGTGACAACAAACTCATAAAGGTGAAAGATCATGCCAATACTAGTTCGTCGATATGTGAAGAAGATGCTCAAGAATTTATTAGATTGGTTAAGCAGAGTGAGTATAAGATTGTTGATCAATTAGCTCAAACACCGGCAAAAAATTAAATATTATCTCTATTGTTATCTTCAGAAGCACACCGAAATATGATATTAGAATCGTTGAATCAAACATATGTTCCTAAAAACATCACGTCAGAAGTCCTGGACAATATTGTTGGAAATATATCCGCATGTAATTCTATAACGTTCACTGATGATGAAATACCTCTTGAAGGTATGGGACATACAAAAACACTTCATATTTCAGTCAAGTGCAAGGACTTCATGATAGCAAAAGTTTTGGTTGACAACGAGTCCTCTTTAAACATAATGCCAAAGTTCACATTAGACCAATAACCCATTGATATATCTCATATGAAGCCTAGTGCAGTAATAGCGAGAGCTTTTGTTGATGGAGCACGCAGTCAAGTTATTGGAGATATAAAAATTCCAATACAAGTAGGACCTTGCACATTTGAAGTAGATTCAAGTCATGGATATTAATTCTGCTTGTAGTTTTCTACTCGGACGACCTTAGATACACTCAGTTGGAGTTGTACCGTCATCGCTACACCAAAGGCTTAAATTCGTGATTGGTAGCAGTTAAGTGATTGTATCTGGCCAAGAAGACATTTTGGTGTCCAGACCGTCATCAATGCCTTATGTTGAAGCTGTAAAGGAAACTTTGAGTCATCTTTTCAGAATTTTGAGATTGTAAGTACCACGACCTTACATGGCGAATCTAAAAAATTTTCAAATACATTTATCAAGGAAGGTGAGAGTTATTTAGACAAAATTCTGAGTCTAACAAATAATATGGAAGGATTTGGACTTGGATACAAACCGAGCAAAGTAGATATGATCAGAGTGAAGAGACAAGGAAAAGAAAAACGATTAGCAAGATTCGAAAATCGAGAACCAAAATGTCAAGGAAAAATTATACTTCCTCTTTATCACTCTTTCAAAAATACTGAAATGACTCATTTAGAAGGCTGTGGGATTTTGCAATTGCAGCTGTGA

mRNA sequence

ATGGAAAACGAGAATATACGTCTGCTTAAAGAAAATCACACCTTAAAAACTCAAAATGAAAGAGGTACATATGGTAGGGAGAGCAAATGGGTCATCTCAACGACCTCAACAATGGGCACCACAACAACCCTTGGGTTATCCATCTTCATATGGCCGTATCCATGGTGGTATGACCCCAATGCTCATTGTGATTATCATGCAGGGTCCATAGGACATTCAACTGAAAATTGCACTGCTTTGAAGTATACAATTCAAGACCTTATTAAGTCGGGATGGTTAAGCTTTAAAAAAGAAGACTCCCCTAATGTCAATAATAATCCTTTGCTAAATCATCTAAATGTTAGGGATGTCATGACTCCCATGAGGCAACTTTTTGATATTCTTCTAGTAAATGGATACATCTTGACAAAATCGTCGCACTCAGAAGCTACTTGTGACAAATATAATGTCTACTTATCTTGTCCTTTTCATAGTGGGGCAAAAGGGCATACGTTGGATCAATGTTCTGAGTTTCATGAGAAAACCCAAGAGTTAATGAATTCAAGGCTTCTTACAGTTTCGCAAGCCTTTCACTTCACCACAGATGACAAAATATGTTCAGTGGAGCAGTTGTTGTCTGAAAAGAGTTTAAACCCATTTATGCAGCCGAAACCTTTAACAATAGTGTCCCACGAGAAGCCTGCTATACTTAGCAATATCCCAAAACCAATCACTATCCATGTGCCAGCCTCTTTTGAATATAAAAGCTTGAAAGCAGTACCATGGAGTTATGAGTACAAGGTGTCTATCAATACAGAAACGCCATCGCTTCCAATTAACAACATCACTGGAGTAGGAGGTTTGACACGAAGTGGGAGATGTTATACACCTGATCAATTGGTGAAACAAGTTGAAAATAAAGAGAAAGAACATAGGTTTGAAGACAAAATTCTGAGTCTAACAAATAATATGGAAGGATTTGGACTTGGATACAAACCGAGCAAAGTAGATATGATCAGAGTGAAGAGACAAGGAAAAGAAAAACGATTAGCAAGATTCGAAAATCGAGAACCAAAATGTCAAGGAAAAATTATACTTCCTCTTTATCACTCTTTCAAAAATACTGAAATGACTCATTTAGAAGGCTGTGGGATTTTGCAATTGCAGCTGTGA

Coding sequence (CDS)

ATGGAAAACGAGAATATACGTCTGCTTAAAGAAAATCACACCTTAAAAACTCAAAATGAAAGAGGTACATATGGTAGGGAGAGCAAATGGGTCATCTCAACGACCTCAACAATGGGCACCACAACAACCCTTGGGTTATCCATCTTCATATGGCCGTATCCATGGTGGTATGACCCCAATGCTCATTGTGATTATCATGCAGGGTCCATAGGACATTCAACTGAAAATTGCACTGCTTTGAAGTATACAATTCAAGACCTTATTAAGTCGGGATGGTTAAGCTTTAAAAAAGAAGACTCCCCTAATGTCAATAATAATCCTTTGCTAAATCATCTAAATGTTAGGGATGTCATGACTCCCATGAGGCAACTTTTTGATATTCTTCTAGTAAATGGATACATCTTGACAAAATCGTCGCACTCAGAAGCTACTTGTGACAAATATAATGTCTACTTATCTTGTCCTTTTCATAGTGGGGCAAAAGGGCATACGTTGGATCAATGTTCTGAGTTTCATGAGAAAACCCAAGAGTTAATGAATTCAAGGCTTCTTACAGTTTCGCAAGCCTTTCACTTCACCACAGATGACAAAATATGTTCAGTGGAGCAGTTGTTGTCTGAAAAGAGTTTAAACCCATTTATGCAGCCGAAACCTTTAACAATAGTGTCCCACGAGAAGCCTGCTATACTTAGCAATATCCCAAAACCAATCACTATCCATGTGCCAGCCTCTTTTGAATATAAAAGCTTGAAAGCAGTACCATGGAGTTATGAGTACAAGGTGTCTATCAATACAGAAACGCCATCGCTTCCAATTAACAACATCACTGGAGTAGGAGGTTTGACACGAAGTGGGAGATGTTATACACCTGATCAATTGGTGAAACAAGTTGAAAATAAAGAGAAAGAACATAGGTTTGAAGACAAAATTCTGAGTCTAACAAATAATATGGAAGGATTTGGACTTGGATACAAACCGAGCAAAGTAGATATGATCAGAGTGAAGAGACAAGGAAAAGAAAAACGATTAGCAAGATTCGAAAATCGAGAACCAAAATGTCAAGGAAAAATTATACTTCCTCTTTATCACTCTTTCAAAAATACTGAAATGACTCATTTAGAAGGCTGTGGGATTTTGCAATTGCAGCTGTGA

Protein sequence

MENENIRLLKENHTLKTQNERGTYGRESKWVISTTSTMGTTTTLGLSIFIWPYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNHLNVRDVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCPFHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQPKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSINTETPSLPINNITGVGGLTRSGRCYTPDQLVKQVENKEKEHRFEDKILSLTNNMEGFGLGYKPSKVDMIRVKRQGKEKRLARFENREPKCQGKIILPLYHSFKNTEMTHLEGCGILQLQL

Homology

[Close]

BLAST of Sed0016672.1 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 266.5 bits (680), Expect = 3.4e-67
Identity = 132/274 (48.18%), Postives = 184/274 (67.15%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD N  CDYHAG+IGHSTENCTALKY +Q LIK+G L+FKKE+ P+V NNPL NH
Sbjct: 481 PYPGWYDANXRCDYHAGAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKNNPLPNH 540

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                ++ TPM+ LF+IL  +GY+  +    +  C++Y+  L+CP
Sbjct: 541 KNVQINAVECQGIESRSKVSEITTPMQXLFEILWXHGYMSMEHLCPDIRCERYDENLTCP 600

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQ 231
           +H+GA+GH L+QCS F EK QEL++ ++LTV+Q+     + +I  VE + + +S +   +
Sbjct: 601 YHAGARGHPLEQCSCFKEKVQELLDLKILTVTQSHQ---EQRIDVVEYVSTAESSSAAYK 660

Query: 232 PKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPIN 291
           PKPLT++  EKP + SN  +PITI VPA FEY S KAVPW YE KV++    ++ SLP++
Sbjct: 661 PKPLTVLYREKPEVPSNSWRPITIQVPAPFEYSSSKAVPWKYECKVTVGQKAQSSSLPVD 720

Query: 292 NITGVGGLTRSGRCYTPDQLVKQVENKEKEHRFE 308
           NIT  GG+TR+GRCYTP+ L+K        ++ E
Sbjct: 721 NITRGGGMTRTGRCYTPESLLKHTNKPNSTNKKE 751

[Close]

BLAST of Sed0016672.1 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 5.9e-67
Identity = 143/290 (49.31%), Postives = 186/290 (64.14%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD NA CDYHAG+IGHSTENCTALKY +Q LIK+GWL+FKKE+ P+V+ NPL NH
Sbjct: 379 PYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENGPDVSKNPLPNH 438

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                D+ TPM +LF+ILL +GY+  +          Y+  L+CP
Sbjct: 439 QNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKGYDESLTCP 498

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQ 231
           FH+GAKGH+L+QC+ F  K QEL++S++LTV+ +        I  VE +   +  +  ++
Sbjct: 499 FHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQ---KKGINIVEDVSVAEGSSDALK 558

Query: 232 PKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPIN 291
           PK LTI   EKP   +   KPITI VPA FEYKS KAVPW Y+ KV++  +  +P LPI+
Sbjct: 559 PKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPID 618

Query: 292 NITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEG 320
           NITGVGGLTR+GRCYTPD L+K V      K KE   E K   +  + +G
Sbjct: 619 NITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKG 665

[Close]

BLAST of Sed0016672.1 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 259.6 bits (662), Expect = 4.2e-65
Identity = 139/293 (47.44%), Postives = 184/293 (62.80%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP W D NA CDYH G+IGHS ENCTALKY +Q LIK+GWL+FKKE+ P+V+NNPL NH
Sbjct: 314 PYPRWCDANARCDYHTGAIGHSIENCTALKYRVQALIKAGWLNFKKENGPBVSNNPLPNH 373

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                D+ TPM +LF+ILL +GY+  +          Y+  L+CP
Sbjct: 374 XNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCP 433

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFH---FTTDDKICSVEQLLSEKSLNP 231
           FH+GAKGH L+QC+ F    QEL++S++LTV+ +         + +   E  ++E S + 
Sbjct: 434 FHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGS-SD 493

Query: 232 FMQPKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSL 291
            ++PK LTI   EKP   +   KPITI VPA FEYKS KAVPW YE KV++  +  +P L
Sbjct: 494 ALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPL 553

Query: 292 PINNITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEG 320
           P++NITGVGGLT +GRCYTPD L+K+V      K KE   E K   +  + +G
Sbjct: 554 PVDNITGVGGLTXTGRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKG 605

[Close]

BLAST of Sed0016672.1 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-07
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 308 DKILSLTNNMEGFGLGYKPSKVDMIRVKRQGKEKRLARFENREPKCQGKIILPLYHSFKN 367
           DK+L +  N + FGLGYKPS+ D+IRV+   K KRL+RFEN E     + + PL HSF++
Sbjct: 909 DKLLRMAKNTKKFGLGYKPSRGDIIRVRSLEKAKRLSRFENEERDYPRRTVPPLSHSFRS 968

Query: 368 TEMTHLE 375
               H E
Sbjct: 969 AGTIHQE 975

HSP 2 Score: 254.2 bits (648), Expect = 1.8e-63
Identity = 146/327 (44.65%), Postives = 197/327 (60.24%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD NA CDYHAG+I HSTENCT LKY +Q LIK+GW +FKKE+  +V+   L NH
Sbjct: 419 PYPRWYDANARCDYHAGAIXHSTENCTXLKYRVQALIKAGWXNFKKENGXDVSKXXLXNH 478

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVY---L 171
            NV+                ++ TPM +LF+ILL +GYI       E  C KY  Y   L
Sbjct: 479 QNVQINAIECQGIESKSKVABITTPMXELFEILLGSGYISV-----EYLCPKYKGYDESL 538

Query: 172 SCPFHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNP 231
           +C FH GAKGH+L+QC+ F  K QEL++S++LT + + H      +  VE +L  +  + 
Sbjct: 539 TCXFHXGAKGHSLEQCNXFRMKVQELLDSKILTXANS-HXKKXTNV--VEDILVAEGSSD 598

Query: 232 FMQPKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSL 291
            ++PKPLTI   EKP   S   KP  I VP  FEYKS KAVPW YE KV++  +  +PSL
Sbjct: 599 SLKPKPLTIFYREKPDAPSCSRKPXXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSL 658

Query: 292 PINNITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEGFGLGYKP 351
           P++NITGVGGLTR+GRCYTPD L+K+V      K KE   E K   +  + +G    ++ 
Sbjct: 659 PVDNITGVGGLTRTGRCYTPDSLLKRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHED 718

[Close]

BLAST of Sed0016672.1 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-56
Identity = 120/247 (48.58%), Postives = 160/247 (64.78%), Query Frame = 0


Query: 53  YPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNHL 112
           YP WYD NA CDYHAG+IGHSTENCTALKY +Q L+K+GWL+FKKE+ P+V+ NPL NH 
Sbjct: 373 YPRWYDANARCDYHAGAIGHSTENCTALKYRVQALLKAGWLNFKKENEPDVSKNPLSNHQ 432

Query: 113 NVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCPF 172
           NV+                D+ TP  +LF+ILL +GY+  +         +Y+  L+CPF
Sbjct: 433 NVQINAIECQGIESKSKVADIRTPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPF 492

Query: 173 HSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQP 232
           H+GAKGH+L+QC+ F  K QEL++S++LTV+ +        I  VE +   +  +  ++P
Sbjct: 493 HAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQ---KKGINVVEDVSVAEGSSDALKP 552

Query: 233 KPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPINN 282
           K LTI   EKP   S   KPITI VPA FEYKS KAVPW Y+ KV++  +  +P LP++N
Sbjct: 553 KRLTIFYSEKPDAPSCSQKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPVDN 612

[Close]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-67
Identity = 132/274 (48.18%), Postives = 184/274 (67.15%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD N  CDYHAG+IGHSTENCTALKY +Q LIK+G L+FKKE+ P+V NNPL NH
Sbjct: 481 PYPGWYDANXRCDYHAGAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKNNPLPNH 540

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                ++ TPM+ LF+IL  +GY+  +    +  C++Y+  L+CP
Sbjct: 541 KNVQINAVECQGIESRSKVSEITTPMQXLFEILWXHGYMSMEHLCPDIRCERYDENLTCP 600

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQ 231
           +H+GA+GH L+QCS F EK QEL++ ++LTV+Q+     + +I  VE + + +S +   +
Sbjct: 601 YHAGARGHPLEQCSCFKEKVQELLDLKILTVTQSHQ---EQRIDVVEYVSTAESSSAAYK 660

Query: 232 PKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPIN 291
           PKPLT++  EKP + SN  +PITI VPA FEY S KAVPW YE KV++    ++ SLP++
Sbjct: 661 PKPLTVLYREKPEVPSNSWRPITIQVPAPFEYSSSKAVPWKYECKVTVGQKAQSSSLPVD 720

Query: 292 NITGVGGLTRSGRCYTPDQLVKQVENKEKEHRFE 308
           NIT  GG+TR+GRCYTP+ L+K        ++ E
Sbjct: 721 NITRGGGMTRTGRCYTPESLLKHTNKPNSTNKKE 751

[Close]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 2.8e-67
Identity = 143/290 (49.31%), Postives = 186/290 (64.14%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD NA CDYHAG+IGHSTENCTALKY +Q LIK+GWL+FKKE+ P+V+ NPL NH
Sbjct: 379 PYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENGPDVSKNPLPNH 438

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                D+ TPM +LF+ILL +GY+  +          Y+  L+CP
Sbjct: 439 QNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKGYDESLTCP 498

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQ 231
           FH+GAKGH+L+QC+ F  K QEL++S++LTV+ +        I  VE +   +  +  ++
Sbjct: 499 FHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQ---KKGINIVEDVSVAEGSSDALK 558

Query: 232 PKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPIN 291
           PK LTI   EKP   +   KPITI VPA FEYKS KAVPW Y+ KV++  +  +P LPI+
Sbjct: 559 PKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPID 618

Query: 292 NITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEG 320
           NITGVGGLTR+GRCYTPD L+K V      K KE   E K   +  + +G
Sbjct: 619 NITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKG 665

[Close]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-65
Identity = 139/293 (47.44%), Postives = 184/293 (62.80%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP W D NA CDYH G+IGHS ENCTALKY +Q LIK+GWL+FKKE+ P+V+NNPL NH
Sbjct: 314 PYPRWCDANARCDYHTGAIGHSIENCTALKYRVQALIKAGWLNFKKENGPDVSNNPLPNH 373

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCP 171
            NV+                D+ TPM +LF+ILL +GY+  +          Y+  L+CP
Sbjct: 374 XNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCP 433

Query: 172 FHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFH---FTTDDKICSVEQLLSEKSLNP 231
           FH+GAKGH L+QC+ F    QEL++S++LTV+ +         + +   E  ++E S + 
Sbjct: 434 FHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGS-SD 493

Query: 232 FMQPKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSL 291
            ++PK LTI   EKP   +   KPITI VPA FEYKS KAVPW YE KV++  +  +P L
Sbjct: 494 ALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPL 553

Query: 292 PINNITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEG 320
           P++NITGVGGLT +GRCYTPD L+K+V      K KE   E K   +  + +G
Sbjct: 554 PVDNITGVGGLTXTGRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKG 605

[Close]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-07
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 308 DKILSLTNNMEGFGLGYKPSKVDMIRVKRQGKEKRLARFENREPKCQGKIILPLYHSFKN 367
           DK+L +  N + FGLGYKPS+ D+IRV+   K KRL+RFEN E     + + PL HSF++
Sbjct: 909 DKLLRMAKNTKKFGLGYKPSRGDIIRVRSLEKAKRLSRFENEERDYPRRTVPPLSHSFRS 968

Query: 368 TEMTHLE 375
               H E
Sbjct: 969 AGTIHQE 975

HSP 2 Score: 255.0 bits (650), Expect = 5.0e-64
Identity = 147/327 (44.95%), Postives = 197/327 (60.24%), Query Frame = 0


Query: 52  PYPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNH 111
           PYP WYD NA CDYHAG+I HSTENCT LKY +Q LIK+GW +FKKE+  +V+   L NH
Sbjct: 419 PYPRWYDANARCDYHAGAIXHSTENCTXLKYRVQALIKAGWXNFKKENGXDVSKXXLXNH 478

Query: 112 LNVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVY---L 171
            NV+                D+ TPM +LF+ILL +GYI       E  C KY  Y   L
Sbjct: 479 QNVQINAIECQGIESKSKVADITTPMXELFEILLGSGYISV-----EYLCPKYKGYDESL 538

Query: 172 SCPFHSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNP 231
           +C FH GAKGH+L+QC+ F  K QEL++S++LT + + H      +  VE +L  +  + 
Sbjct: 539 TCXFHXGAKGHSLEQCNXFRMKVQELLDSKILTXANS-HXKKXTNV--VEDILVAEGSSD 598

Query: 232 FMQPKPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSL 291
            ++PKPLTI   EKP   S   KP  I VP  FEYKS KAVPW YE KV++  +  +PSL
Sbjct: 599 SLKPKPLTIFYREKPDAPSCSRKPXXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSL 658

Query: 292 PINNITGVGGLTRSGRCYTPDQLVKQV----ENKEKEHRFEDKILSLTNNMEGFGLGYKP 351
           P++NITGVGGLTR+GRCYTPD L+K+V      K KE   E K   +  + +G    ++ 
Sbjct: 659 PVDNITGVGGLTRTGRCYTPDSLLKRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHED 718

[Close]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-56
Identity = 120/247 (48.58%), Postives = 160/247 (64.78%), Query Frame = 0


Query: 53  YPWWYDPNAHCDYHAGSIGHSTENCTALKYTIQDLIKSGWLSFKKEDSPNVNNNPLLNHL 112
           YP WYD NA CDYHAG+IGHSTENCTALKY +Q L+K+GWL+FKKE+ P+V+ NPL NH 
Sbjct: 373 YPRWYDANARCDYHAGAIGHSTENCTALKYRVQALLKAGWLNFKKENEPDVSKNPLSNHQ 432

Query: 113 NVR----------------DVMTPMRQLFDILLVNGYILTKSSHSEATCDKYNVYLSCPF 172
           NV+                D+ TP  +LF+ILL +GY+  +         +Y+  L+CPF
Sbjct: 433 NVQINAIECQGIESKSKVADIRTPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPF 492

Query: 173 HSGAKGHTLDQCSEFHEKTQELMNSRLLTVSQAFHFTTDDKICSVEQLLSEKSLNPFMQP 232
           H+GAKGH+L+QC+ F  K QEL++S++LTV+ +        I  VE +   +  +  ++P
Sbjct: 493 HAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQ---KKGINVVEDVSVAEGSSDALKP 552

Query: 233 KPLTIVSHEKPAILSNIPKPITIHVPASFEYKSLKAVPWSYEYKVSI--NTETPSLPINN 282
           K LTI   EKP   S   KPITI VPA FEYKS KAVPW Y+ KV++  +  +P LP++N
Sbjct: 553 KRLTIFYSEKPDAPSCSQKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPVDN 612

The following BLAST results are available for this feature:

BLAST of Sed0016672.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155098.1	3.4e-67	48.18	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022158986.1	5.9e-67	49.31	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022143495.1	4.2e-65	47.44	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_022143495.1	6.8e-07	47.76	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_022157796.1	2.1e-56	48.58	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]

BLAST of Sed0016672.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016672.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM29	1.7e-67	48.18	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1E2J7	2.8e-67	49.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1CNY7	4.5e-65	47.44	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1CNY7	3.3e-07	47.76	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1DZ90	1.0e-56	48.58	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]

BLAST of Sed0016672.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 71..294
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 71..294

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016672	Sed0016672	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016672.1-cds	Sed0016672.1-cds-LG04:25203048..25203277	CDS
Sed0016672.1-cds	Sed0016672.1-cds-LG04:25204166..25204751	CDS
Sed0016672.1-cds	Sed0016672.1-cds-LG04:25204790..25204972	CDS
Sed0016672.1-cds	Sed0016672.1-cds-LG04:25205223..25205313	CDS
Sed0016672.1-cds	Sed0016672.1-cds-LG04:25207093..25207154	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016672.1-exon	Sed0016672.1-exon-LG04:25203048..25203277	exon
Sed0016672.1-exon	Sed0016672.1-exon-LG04:25204166..25204751	exon
Sed0016672.1-exon	Sed0016672.1-exon-LG04:25204790..25204972	exon
Sed0016672.1-exon	Sed0016672.1-exon-LG04:25205223..25205313	exon
Sed0016672.1-exon	Sed0016672.1-exon-LG04:25207093..25207154	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016672.1	Sed0016672.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid