Sed0016441.1 (mRNA) Chayote v1

Overview


Name	Sed0016441.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	MYB transcription factor
Location	LG11: 24562134 .. 24562987 (+)
Sequence length	854
RNA-Seq Expression	Sed0016441.1
Synteny	Sed0016441.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATGAATATGATGAGACTCTCCACCTCAGCTTCCTCCTCCTCCTCCGACGATTCCACCTCATCGGACTCCTCCTTCTCCTGCAAGGCCCTGCGCCGCCCCGACAGGATCAAAGGCCCCTGGAGCGCCGACGAGGATCGGGTTCTGACTCACCTCGTCGCCCGCCACGGCCCCCGGAACTGGTCCTTGATCAGCAGCTCCATCAACGGCCGATCCGGGAAGTCGTGTCGTCTCCGGTGGTGCAACCAGCTGAGCCCCAGTGTGGAGCACCGCCCGTTTTCACCCGCCGAGGACCACACCATTTTGGCTGCCCACGCCCGCTTCGGCAACCGGTGGGCCACCATTGCCCGCTTGCTTCCCGGCCGCACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTGAAGCGAAGGGCGAAGGAGCGCCAACAGAATTTGGCAATGGACGGGATTGCCCCTCACAGTCATCCCAATAATGCTGCTCATTTGAACGTGTCCCTACCCGTTGAGGATGATCCGTTGACTGCGTTGACTCTGGCGCCCCCTGGGATCTCCGGAGGACCGACGCCGGGAGAGCGGCCGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCTATGAGGGATGTCATAGCCAGGGAGGTGCGAGAGTACATGACGACGTCGTTTGTGGAAAATCCAGAGTTTCACTAAACAAAATGCAGATTCCTCTCTTTCTGTTTGCCCATACAAAGTTGTATTCAATTCTTGTTAATATAATGATTCATTAAAATTTTTTTAAAAAAGAACGAAATTCCAACGTGGCATTACAGCCTGGCTTCGATTGGCGATTTTATTTTAGGAAAATGTTTTTGGG

mRNA sequence

AAAAATGAATATGATGAGACTCTCCACCTCAGCTTCCTCCTCCTCCTCCGACGATTCCACCTCATCGGACTCCTCCTTCTCCTGCAAGGCCCTGCGCCGCCCCGACAGGATCAAAGGCCCCTGGAGCGCCGACGAGGATCGGGTTCTGACTCACCTCGTCGCCCGCCACGGCCCCCGGAACTGGTCCTTGATCAGCAGCTCCATCAACGGCCGATCCGGGAAGTCGTGTCGTCTCCGGTGGTGCAACCAGCTGAGCCCCAGTGTGGAGCACCGCCCGTTTTCACCCGCCGAGGACCACACCATTTTGGCTGCCCACGCCCGCTTCGGCAACCGGTGGGCCACCATTGCCCGCTTGCTTCCCGGCCGCACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTGAAGCGAAGGGCGAAGGAGCGCCAACAGAATTTGGCAATGGACGGGATTGCCCCTCACAGTCATCCCAATAATGCTGCTCATTTGAACGTGTCCCTACCCGTTGAGGATGATCCGTTGACTGCGTTGACTCTGGCGCCCCCTGGGATCTCCGGAGGACCGACGCCGGGAGAGCGGCCGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCTATGAGGGATGTCATAGCCAGGGAGGTGCGAGAGTACATGACGACGTCGTTTGTGGAAAATCCAGAGTTTCACTAAACAAAATGCAGATTCCTCTCTTTCTGTTTGCCCATACAAAGTTGTATTCAATTCTTGTTAATATAATGATTCATTAAAATTTTTTTAAAAAAGAACGAAATTCCAACGTGGCATTACAGCCTGGCTTCGATTGGCGATTTTATTTTAGGAAAATGTTTTTGGG

Coding sequence (CDS)

ATGAATATGATGAGACTCTCCACCTCAGCTTCCTCCTCCTCCTCCGACGATTCCACCTCATCGGACTCCTCCTTCTCCTGCAAGGCCCTGCGCCGCCCCGACAGGATCAAAGGCCCCTGGAGCGCCGACGAGGATCGGGTTCTGACTCACCTCGTCGCCCGCCACGGCCCCCGGAACTGGTCCTTGATCAGCAGCTCCATCAACGGCCGATCCGGGAAGTCGTGTCGTCTCCGGTGGTGCAACCAGCTGAGCCCCAGTGTGGAGCACCGCCCGTTTTCACCCGCCGAGGACCACACCATTTTGGCTGCCCACGCCCGCTTCGGCAACCGGTGGGCCACCATTGCCCGCTTGCTTCCCGGCCGCACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTGAAGCGAAGGGCGAAGGAGCGCCAACAGAATTTGGCAATGGACGGGATTGCCCCTCACAGTCATCCCAATAATGCTGCTCATTTGAACGTGTCCCTACCCGTTGAGGATGATCCGTTGACTGCGTTGACTCTGGCGCCCCCTGGGATCTCCGGAGGACCGACGCCGGGAGAGCGGCCGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCTATGAGGGATGTCATAGCCAGGGAGGTGCGAGAGTACATGACGACGTCGTTTGTGGAAAATCCAGAGTTTCACTAA

Protein sequence

MNMMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKERQQNLAMDGIAPHSHPNNAAHLNVSLPVEDDPLTALTLAPPGISGGPTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH

Homology

[Close]

BLAST of Sed0016441.1 vs. NCBI nr
Match: XP_038885826.1 (transcription factor MYB25-like [Benincasa hispida])

HSP 1 Score: 358.2 bits (918), Expect = 5.2e-95
Identity = 180/228 (78.95%), Postives = 199/228 (87.28%), Query Frame = 0


Query: 9   SASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSSIN 68
           ++SSSSS DSTSSDSSFS K LRRP++IKGPWSA+EDR+LT LVAR+GPRNWSLIS  I 
Sbjct: 3   TSSSSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVARYGPRNWSLISRYIK 62

Query: 69  GRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAVKN 128
           GRSGKSCRLRWCNQLSP+VEHRPFSP ED TILAAHARFGNRWATIARLLPGRTDNAVKN
Sbjct: 63  GRSGKSCRLRWCNQLSPNVEHRPFSPMEDETILAAHARFGNRWATIARLLPGRTDNAVKN 122

Query: 129 HWNSTLKRRAKERQQNLAMDGIAPHSHPNN------AAHLNVSLPVEDDPLTALTLAPPG 188
           HWNSTLKRRA+E+QQ L MD IAP +H NN      A+ L +S+P+E+DPLTALTLAPPG
Sbjct: 123 HWNSTLKRRAREQQQQLVMDEIAPENHGNNNNAVNIASDLKLSVPLEEDPLTALTLAPPG 182

Query: 189 ISGG--PTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           I GG   T  ER VE+FPAGFWDAMRDVIAREVREYMTT+F+ENPEFH
Sbjct: 183 IGGGRTTTAEERRVENFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230

[Close]

BLAST of Sed0016441.1 vs. NCBI nr
Match: XP_023002015.1 (transcription factor MYB44-like [Cucurbita maxima])

HSP 1 Score: 348.2 bits (892), Expect = 5.4e-92
Identity = 172/224 (76.79%), Postives = 194/224 (86.61%), Query Frame = 0


Query: 7   STSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSS 66
           S+S+SSSSS  STSS +SFS K  RRP++IKGPWSA+EDR+L HLV R+GPRNWSLIS  
Sbjct: 7   SSSSSSSSSSSSTSSGTSFSAKPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRY 66

Query: 67  INGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAV 126
           I GRSGKSCRLRWCNQLSP+VEHRPFS  ED TILAAHARFGNRWATIARLLPGRTDNAV
Sbjct: 67  IKGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAV 126

Query: 127 KNHWNSTLKRRAKERQQNLAMDGIAPHSHPN--NAAHLNVSLPVEDDPLTALTLAPPGIS 186
           KNHWNSTLKRRA+++Q +LAMDGI P +H N    + L +S+P+EDDPLTALTLAPPGIS
Sbjct: 127 KNHWNSTLKRRARDQQHHLAMDGITPDNHGNAVTDSDLKLSVPLEDDPLTALTLAPPGIS 186

Query: 187 GGPTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           GG    ER +ESFPAGFWDAMRDV+AREVREYMTT+F+EN EFH
Sbjct: 187 GGVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH 230

[Close]

BLAST of Sed0016441.1 vs. NCBI nr
Match: XP_022144294.1 (transcription factor MYB1-like [Momordica charantia])

HSP 1 Score: 347.4 bits (890), Expect = 9.1e-92
Identity = 180/235 (76.60%), Postives = 197/235 (83.83%), Query Frame = 0


Query: 3   MMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSL 62
           M  L  S+SSSSS DSTSSDSSFS KA RRP++IKGPWSA+EDR+LT LV R+GPRNWSL
Sbjct: 1   MEALMRSSSSSSSSDSTSSDSSFSGKASRRPEKIKGPWSAEEDRILTQLVGRYGPRNWSL 60

Query: 63  ISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRT 122
           IS  I GRSGKSCRLRWCNQLSPSVEHRPFSP ED TILAAHARFGNRWATIARLLPGRT
Sbjct: 61  ISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRT 120

Query: 123 DNAVKNHWNSTLKRRAKERQQNLAMDGIAPHSHPNNA---AHLNVSLP-VEDDPLTALTL 182
           DNAVKNHWNSTLKRRA+ERQQ L MDGIAP +H N+    + L +S+P +EDDPLTALTL
Sbjct: 121 DNAVKNHWNSTLKRRARERQQQLVMDGIAPENHGNSVNLPSDLKLSVPDLEDDPLTALTL 180

Query: 183 APPGISGGPTP-----GERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           APPGI GG  P      +R +ES P GFWDAMRDVIAREVREYMTT+F+ENPE H
Sbjct: 181 APPGI-GGADPRAAAVDDRRIESLPVGFWDAMRDVIAREVREYMTTTFMENPELH 234

[Close]

BLAST of Sed0016441.1 vs. NCBI nr
Match: KAG7020554.1 (Transcription factor MYB44, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 9.1e-92
Identity = 171/223 (76.68%), Postives = 191/223 (85.65%), Query Frame = 0


Query: 8   TSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSSI 67
           T++SSSSS  STSSDSSFS    RRP++IKGPWSA+EDR+L HLV R+GPRNWSLIS  I
Sbjct: 2   TTSSSSSSSSSTSSDSSFSANPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYI 61

Query: 68  NGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAVK 127
            GRSGKSCRLRWCNQLSP+VEHRPFS  ED TILAAHARFGNRWATIARLLPGRTDNAVK
Sbjct: 62  KGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVK 121

Query: 128 NHWNSTLKRRAKERQQNLAMDGIAPHSHPNNA--AHLNVSLPVEDDPLTALTLAPPGISG 187
           NHWNSTLKRRA+ +Q  LA+DGI P +H N    + L +S+P+EDDPLTALTLAPPGISG
Sbjct: 122 NHWNSTLKRRARHQQHRLAIDGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISG 181

Query: 188 GPTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           G    ER +ESFPAGFWDAMRDV+AREVREYMTT+F+EN EFH
Sbjct: 182 GVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH 224

[Close]

BLAST of Sed0016441.1 vs. NCBI nr
Match: KAA0033571.1 (transcription factor MYB44-like [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.5e-91
Identity = 183/241 (75.93%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 3   MMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSL 62
           MMR  +S+S+SSS DSTSSDSSFS K LRRP++IKGPWSA+EDR+LT LV R+G RNWSL
Sbjct: 1   MMR--SSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSL 60

Query: 63  ISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRT 122
           IS  I GRSGKSCRLRWCNQLSP+VEHRPFSP ED TILAAHARFGNRWATIARLLPGRT
Sbjct: 61  ISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRT 120

Query: 123 DNAVKNHWNSTLKRRAKE-RQQNLAMDGIAPHSH-----PNNAAH------LNVSLPVED 182
           DNAVKNHWNSTLKRRA+E +QQ L MDGI P  H      NNA +      L+VS+P+ED
Sbjct: 121 DNAVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLED 180

Query: 183 DPLTALTLAPPGISGGPTPG---ERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEF 229
           DPLTALTLAPPGI G  T     ER VESFPAGFWDAMRDVIAREVREYMTT+F+ENPEF
Sbjct: 181 DPLTALTLAPPGIGGVRTTAVVDERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEF 239

[Close]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot
Match: O23160 (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           +RIKGPWS +ED +L  LV +HGPRNWSLIS SI GRSGKSCRLRWCNQLSP VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKERQQNLAMDG 150
             ED TI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+     Q+    G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGG 125

[Close]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot
Match: Q9FDW1 (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.4e-44
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           DRIKGPWS +ED  L  LV ++GPRNW++IS SI GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             ED TI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot
Match: Q9SN12 (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.4e-44
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           DR+KGPWS +ED  L  +V ++GPRNWS IS SI GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           P ED TI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot
Match: Q42575 (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 32  RPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRP 91
           R DR+KGPWS +ED VL+ LV R G RNWS I+ SI GRSGKSCRLRWCNQL+P++    
Sbjct: 50  RRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNS 109

Query: 92  FSPAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           F+  ED  I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct: 110 FTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

[Close]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot
Match: O04192 (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-36
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 35  RIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFSP 94
           ++KGPW  ++D  LT LV   GPRNW+LIS  I GRSGKSCRLRWCNQL P ++ +PFS 
Sbjct: 48  KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query: 95  AEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKER 142
            E+H I++A A  GN+W+ IA+LLPGRTDNA+KNHWNS L+R+  E+
Sbjct: 108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQ 154

[Close]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL
Match: A0A6J1KMR9 (transcription factor MYB44-like OS=Cucurbita maxima OX=3661 GN=LOC111496025 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.6e-92
Identity = 172/224 (76.79%), Postives = 194/224 (86.61%), Query Frame = 0


Query: 7   STSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSS 66
           S+S+SSSSS  STSS +SFS K  RRP++IKGPWSA+EDR+L HLV R+GPRNWSLIS  
Sbjct: 7   SSSSSSSSSSSSTSSGTSFSAKPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRY 66

Query: 67  INGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAV 126
           I GRSGKSCRLRWCNQLSP+VEHRPFS  ED TILAAHARFGNRWATIARLLPGRTDNAV
Sbjct: 67  IKGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAV 126

Query: 127 KNHWNSTLKRRAKERQQNLAMDGIAPHSHPN--NAAHLNVSLPVEDDPLTALTLAPPGIS 186
           KNHWNSTLKRRA+++Q +LAMDGI P +H N    + L +S+P+EDDPLTALTLAPPGIS
Sbjct: 127 KNHWNSTLKRRARDQQHHLAMDGITPDNHGNAVTDSDLKLSVPLEDDPLTALTLAPPGIS 186

Query: 187 GGPTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           GG    ER +ESFPAGFWDAMRDV+AREVREYMTT+F+EN EFH
Sbjct: 187 GGVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH 230

[Close]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL
Match: A0A6J1CRX2 (transcription factor MYB1-like OS=Momordica charantia OX=3673 GN=LOC111014010 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.4e-92
Identity = 180/235 (76.60%), Postives = 197/235 (83.83%), Query Frame = 0


Query: 3   MMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSL 62
           M  L  S+SSSSS DSTSSDSSFS KA RRP++IKGPWSA+EDR+LT LV R+GPRNWSL
Sbjct: 1   MEALMRSSSSSSSSDSTSSDSSFSGKASRRPEKIKGPWSAEEDRILTQLVGRYGPRNWSL 60

Query: 63  ISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRT 122
           IS  I GRSGKSCRLRWCNQLSPSVEHRPFSP ED TILAAHARFGNRWATIARLLPGRT
Sbjct: 61  ISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRT 120

Query: 123 DNAVKNHWNSTLKRRAKERQQNLAMDGIAPHSHPNNA---AHLNVSLP-VEDDPLTALTL 182
           DNAVKNHWNSTLKRRA+ERQQ L MDGIAP +H N+    + L +S+P +EDDPLTALTL
Sbjct: 121 DNAVKNHWNSTLKRRARERQQQLVMDGIAPENHGNSVNLPSDLKLSVPDLEDDPLTALTL 180

Query: 183 APPGISGGPTP-----GERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           APPGI GG  P      +R +ES P GFWDAMRDVIAREVREYMTT+F+ENPE H
Sbjct: 181 APPGI-GGADPRAAAVDDRRIESLPVGFWDAMRDVIAREVREYMTTTFMENPELH 234

[Close]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL
Match: A0A5A7SVX1 (Transcription factor MYB44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48285G00010 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 183/241 (75.93%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 3   MMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSL 62
           MMR  +S+S+SSS DSTSSDSSFS K LRRP++IKGPWSA+EDR+LT LV R+G RNWSL
Sbjct: 1   MMR--SSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSL 60

Query: 63  ISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRT 122
           IS  I GRSGKSCRLRWCNQLSP+VEHRPFSP ED TILAAHARFGNRWATIARLLPGRT
Sbjct: 61  ISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRT 120

Query: 123 DNAVKNHWNSTLKRRAKE-RQQNLAMDGIAPHSH-----PNNAAH------LNVSLPVED 182
           DNAVKNHWNSTLKRRA+E +QQ L MDGI P  H      NNA +      L+VS+P+ED
Sbjct: 121 DNAVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLED 180

Query: 183 DPLTALTLAPPGISGGPTPG---ERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEF 229
           DPLTALTLAPPGI G  T     ER VESFPAGFWDAMRDVIAREVREYMTT+F+ENPEF
Sbjct: 181 DPLTALTLAPPGIGGVRTTAVVDERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEF 239

[Close]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL
Match: A0A1S3BAB9 (transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 183/240 (76.25%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 3   MMRLSTSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSL 62
           MMR  +S+S+SSS DSTSSDSSFS K LRRP++IKGPWSA+EDR+LT LV R+G RNWSL
Sbjct: 1   MMR--SSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSL 60

Query: 63  ISSSINGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRT 122
           IS  I GRSGKSCRLRWCNQLSP+VEHRPFSP ED TILAAHARFGNRWATIARLLPGRT
Sbjct: 61  ISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRT 120

Query: 123 DNAVKNHWNSTLKRRAKE-RQQNLAMDGIAPHSH-----PNNAAH------LNVSLPVED 182
           DNAVKNHWNSTLKRRA+E +QQ L MDGI P  H      NNA +      L+VS+P+ED
Sbjct: 121 DNAVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLED 180

Query: 183 DPLTALTLAPPGISGGPTPG--ERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           DPLTALTLAPPGI G  T    ER VESFPAGFWDAMRDVIAREVREYMTT+F+ENPEFH
Sbjct: 181 DPLTALTLAPPGIGGVRTTAVDERLVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 238

[Close]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL
Match: A0A6J1GI94 (transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111454401 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.4e-91
Identity = 170/223 (76.23%), Postives = 191/223 (85.65%), Query Frame = 0


Query: 8   TSASSSSSDDSTSSDSSFSCKALRRPDRIKGPWSADEDRVLTHLVARHGPRNWSLISSSI 67
           T++SSSSS  STSSDSSFS    RRP++IKGPWSA+EDR+L  LV R+GPRNWSLIS  I
Sbjct: 2   TTSSSSSSSSSTSSDSSFSGNPSRRPEKIKGPWSAEEDRILIQLVDRYGPRNWSLISRYI 61

Query: 68  NGRSGKSCRLRWCNQLSPSVEHRPFSPAEDHTILAAHARFGNRWATIARLLPGRTDNAVK 127
            GRSGKSCRLRWCNQLSP+VEHRPFS  ED TILAAHARFGNRWATIARLLPGRTDNAVK
Sbjct: 62  KGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVK 121

Query: 128 NHWNSTLKRRAKERQQNLAMDGIAPHSHPN--NAAHLNVSLPVEDDPLTALTLAPPGISG 187
           NHWNSTLKRRA+ +Q +LA+DGI P +H N    + L +S+P+EDDPLTALTLAPPGISG
Sbjct: 122 NHWNSTLKRRARHQQHHLAIDGITPDNHANAVTDSDLKLSVPLEDDPLTALTLAPPGISG 181

Query: 188 GPTPGERPVESFPAGFWDAMRDVIAREVREYMTTSFVENPEFH 229
           G    ER +ESFPAGFWDAMRDV+AREVREYMTT+F+EN EFH
Sbjct: 182 GVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH 224

[Close]

BLAST of Sed0016441.1 vs. TAIR 10
Match: AT4G37260.1 (myb domain protein 73 )

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-45
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           +RIKGPWS +ED +L  LV +HGPRNWSLIS SI GRSGKSCRLRWCNQLSP VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKERQQNLAMDG 150
             ED TI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+     Q+    G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGG 125

[Close]

BLAST of Sed0016441.1 vs. TAIR 10
Match: AT2G23290.1 (myb domain protein 70 )

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-45
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           DRIKGPWS +ED +L  LV +HGPRNWSLIS SI GRSGKSCRLRWCNQLSP VEHR F+
Sbjct: 10  DRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRGFT 69

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             ED TI+ AHARFGN+WATIARLL GRTDNA+KNHWNSTLKR+
Sbjct: 70  AEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

[Close]

BLAST of Sed0016441.1 vs. TAIR 10
Match: AT3G50060.1 (myb domain protein 77 )

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-45
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           DR+KGPWS +ED  L  +V ++GPRNWS IS SI GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           P ED TI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Sed0016441.1 vs. TAIR 10
Match: AT5G67300.1 (myb domain protein r1 )

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-45
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 34  DRIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFS 93
           DRIKGPWS +ED  L  LV ++GPRNW++IS SI GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 94  PAEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             ED TI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Sed0016441.1 vs. TAIR 10
Match: AT3G55730.1 (myb domain protein 109 )

HSP 1 Score: 158.3 bits (399), Expect = 7.3e-39
Identity = 70/110 (63.64%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 35  RIKGPWSADEDRVLTHLVARHGPRNWSLISSSINGRSGKSCRLRWCNQLSPSVEHRPFSP 94
           ++KGPWS +ED VLT LV + GPRNWSLI+  I GRSGKSCRLRWCNQL P ++ +PFS 
Sbjct: 54  KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query: 95  AEDHTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKERQQN 145
            ED  I++AHA  GN+WA IA+LL GRTDNA+KNHWNSTL+R+  +   N
Sbjct: 114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNN 163

The following BLAST results are available for this feature:

BLAST of Sed0016441.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885826.1	5.2e-95	78.95	transcription factor MYB25-like [Benincasa hispida]	[more]
XP_023002015.1	5.4e-92	76.79	transcription factor MYB44-like [Cucurbita maxima]	[more]
XP_022144294.1	9.1e-92	76.60	transcription factor MYB1-like [Momordica charantia]	[more]
KAG7020554.1	9.1e-92	76.68	Transcription factor MYB44, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0033571.1	3.5e-91	75.93	transcription factor MYB44-like [Cucumis melo var. makuwa]	[more]

BLAST of Sed0016441.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23160	1.5e-44	71.55	Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1	[more]
Q9FDW1	7.4e-44	77.88	Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1	[more]
Q9SN12	7.4e-44	76.92	Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1	[more]
Q42575	1.3e-37	66.98	Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1	[more]
O04192	5.7e-36	60.75	Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1	[more]

BLAST of Sed0016441.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMR9	2.6e-92	76.79	transcription factor MYB44-like OS=Cucurbita maxima OX=3661 GN=LOC111496025 PE=4...	[more]
A0A6J1CRX2	4.4e-92	76.60	transcription factor MYB1-like OS=Momordica charantia OX=3673 GN=LOC111014010 PE...	[more]
A0A5A7SVX1	1.7e-91	75.93	Transcription factor MYB44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3BAB9	1.7e-91	76.25	transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=...	[more]
A0A6J1GI94	6.4e-91	76.23	transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111454401 PE...	[more]

BLAST of Sed0016441.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37260.1	1.1e-45	71.55	myb domain protein 73	[more]
AT2G23290.1	1.8e-45	78.85	myb domain protein 70	[more]
AT3G50060.1	5.2e-45	76.92	myb domain protein 77	[more]
AT5G67300.1	5.2e-45	77.88	myb domain protein r1	[more]
AT3G55730.1	7.3e-39	63.64	myb domain protein 109	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 36..85 e-value: 2.0E-14 score: 63.9 coord: 88..136 e-value: 6.5E-13 score: 58.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 32..83 score: 11.613808
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 84..134 score: 9.01263
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 91..134 e-value: 1.54191E-10 score: 52.963
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 39..81 e-value: 6.08304E-14 score: 61.8226
None	No IPR available	GENE3D	1.10.10.60		coord: 90..155 e-value: 9.3E-21 score: 75.7
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 40..98 e-value: 2.3E-15 score: 56.6
None	No IPR available	GENE3D	1.10.10.60		coord: 36..88 e-value: 3.6E-21 score: 76.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 5..213
None	No IPR available	PANTHER	PTHR45614:SF53	TRANSCRIPTION FACTOR MYB44-LIKE	coord: 5..213
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 32..87 score: 25.502579
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 89..138 score: 21.743656
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 34..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016441	Sed0016441	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016441.1-five_prime_utr	Sed0016441.1-five_prime_utr-LG11:24562134..24562137	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016441.1-exon	Sed0016441.1-exon-LG11:24562134..24562987	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016441.1-cds	Sed0016441.1-cds-LG11:24562138..24562824	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016441.1-three_prime_utr	Sed0016441.1-three_prime_utr-LG11:24562825..24562987	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016441.1	Sed0016441.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding