Sed0016271.1 (mRNA) Chayote v1

Overview


Name	Sed0016271.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	PRA1 family protein
Location	LG06: 45820262 .. 45821168 (-)
Sequence length	907
RNA-Seq Expression	Sed0016271.1
Synteny	Sed0016271.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGATGTAGCAGTTAACCGGCGAAATCAGATTCTTCGTTTCAAAACCCCCAATCACTTTCTTCATCCAAAAAAAACCCAAACTCCGGCGACGAACAAAATGACCTACGGCACGATTCCGACATCTTCCTCCGCCGCCGCCGCCACCGCCGAATACATCTCCCAGGCGAAACAGCGCTTCAAAGACGGGCTCGGCCACCGGCGTCCATGGCGTCAACTCGCCGACCACCGCGCCTTCAATCTCCCTTCCAGCCTCCGCGACGCTCTGTCTCGGATCCGAACCAACCTGGCCTACTTCCGCATGAACTACGCCCTCGTCGTGCTCGTAATCCTCTCCCTCGCTCTCATCTACCATCCGATCTCGCTGATCGTCCTCGCTCTCATGGCCACTCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCGCTCCTCCTCGCCGGCCGCCTCGTCCAGGATTGGGCGATTCTTCTCCTTCTCTCCGTTTTCACCGTCGGATTCCTGCTCTTCACCAACGCGACGCTCAACATTCTCGTCGCGATTCTGATCGGCGCCGCGGTTGTGGCCGCGCACGCCGCCGTGAGGAAGACCGAGGATCTGTACTTGGATGAAGAAGATGCGGCTGGATTGGTCGCGCCTGGATCGTAATCGGAACGGTACTCGTTTGTGTAAAGGTTTTTTCCATCATTTCTTCTGATTCTGATTTGGCGATCTCTGTTTTTTTTTTTAGTTCGAATTGGAAATTTTATGGAATTATGTGATTCGATTTGTGCTTTTGTGATTTCACTTCATTTATCATTCTTCTGATGCAATTAGGGATTTGTTCTTGTTCTTCATTCGTCTTTTTTCTCTCTGTGTTGACTGTTTATTTTGTGTTGAAATTTAATTTGTAACCTTATAATTGTGC

mRNA sequence

GAAGAAGATGTAGCAGTTAACCGGCGAAATCAGATTCTTCGTTTCAAAACCCCCAATCACTTTCTTCATCCAAAAAAAACCCAAACTCCGGCGACGAACAAAATGACCTACGGCACGATTCCGACATCTTCCTCCGCCGCCGCCGCCACCGCCGAATACATCTCCCAGGCGAAACAGCGCTTCAAAGACGGGCTCGGCCACCGGCGTCCATGGCGTCAACTCGCCGACCACCGCGCCTTCAATCTCCCTTCCAGCCTCCGCGACGCTCTGTCTCGGATCCGAACCAACCTGGCCTACTTCCGCATGAACTACGCCCTCGTCGTGCTCGTAATCCTCTCCCTCGCTCTCATCTACCATCCGATCTCGCTGATCGTCCTCGCTCTCATGGCCACTCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCGCTCCTCCTCGCCGGCCGCCTCGTCCAGGATTGGGCGATTCTTCTCCTTCTCTCCGTTTTCACCGTCGGATTCCTGCTCTTCACCAACGCGACGCTCAACATTCTCGTCGCGATTCTGATCGGCGCCGCGGTTGTGGCCGCGCACGCCGCCGTGAGGAAGACCGAGGATCTGTACTTGGATGAAGAAGATGCGGCTGGATTGGTCGCGCCTGGATCGTAATCGGAACGGTACTCGTTTGTGTAAAGGTTTTTTCCATCATTTCTTCTGATTCTGATTTGGCGATCTCTGTTTTTTTTTTTAGTTCGAATTGGAAATTTTATGGAATTATGTGATTCGATTTGTGCTTTTGTGATTTCACTTCATTTATCATTCTTCTGATGCAATTAGGGATTTGTTCTTGTTCTTCATTCGTCTTTTTTCTCTCTGTGTTGACTGTTTATTTTGTGTTGAAATTTAATTTGTAACCTTATAATTGTGC

Coding sequence (CDS)

ATGACCTACGGCACGATTCCGACATCTTCCTCCGCCGCCGCCGCCACCGCCGAATACATCTCCCAGGCGAAACAGCGCTTCAAAGACGGGCTCGGCCACCGGCGTCCATGGCGTCAACTCGCCGACCACCGCGCCTTCAATCTCCCTTCCAGCCTCCGCGACGCTCTGTCTCGGATCCGAACCAACCTGGCCTACTTCCGCATGAACTACGCCCTCGTCGTGCTCGTAATCCTCTCCCTCGCTCTCATCTACCATCCGATCTCGCTGATCGTCCTCGCTCTCATGGCCACTCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCGCTCCTCCTCGCCGGCCGCCTCGTCCAGGATTGGGCGATTCTTCTCCTTCTCTCCGTTTTCACCGTCGGATTCCTGCTCTTCACCAACGCGACGCTCAACATTCTCGTCGCGATTCTGATCGGCGCCGCGGTTGTGGCCGCGCACGCCGCCGTGAGGAAGACCGAGGATCTGTACTTGGATGAAGAAGATGCGGCTGGATTGGTCGCGCCTGGATCGTAA

Protein sequence

MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPGS

Homology

[Close]

BLAST of Sed0016271.1 vs. NCBI nr
Match: XP_022949100.1 (PRA1 family protein F2-like [Cucurbita moschata] >KAG6606723.1 PRA1 family protein F2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.0 bits (676), Expect = 4.7e-67
Identity = 142/181 (78.45%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D LSRI+
Sbjct: 1   MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLSRIK 60

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 61  VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 120

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAAVRKTE+LYLDEE AAGL+APG
Sbjct: 121 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEE-AAGLMAPG 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of Sed0016271.1 vs. NCBI nr
Match: KAG7036438.1 (PRA1 family protein F2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 141/181 (77.90%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D LSRI+
Sbjct: 1   MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLSRIK 60

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 61  VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 120

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAA+RKTE+LYLDEE AAGL+APG
Sbjct: 121 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAMRKTENLYLDEE-AAGLMAPG 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of Sed0016271.1 vs. NCBI nr
Match: XP_023525376.1 (PRA1 family protein F3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 141/181 (77.90%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D L+RI+
Sbjct: 1   MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLARIK 60

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 61  VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 120

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAAVRKTE+LYLDEE AAGL+APG
Sbjct: 121 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEE-AAGLMAPG 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of Sed0016271.1 vs. NCBI nr
Match: XP_022997756.1 (PRA1 family protein F3-like [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 141/181 (77.90%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D L+RI+
Sbjct: 45  MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLARIK 104

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 105 VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 164

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAAVRKTE+LYLDEE AAGL+APG
Sbjct: 165 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEE-AAGLMAPG 224

Query: 181 S 182
           S
Sbjct: 225 S 224

[Close]

BLAST of Sed0016271.1 vs. NCBI nr
Match: XP_008447601.1 (PREDICTED: PRA1 family protein F2-like [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-64
Identity = 136/179 (75.98%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 3   YGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTN 62
           YGTIPT SSAAAA  EYIS+AKQRFKDGLGHRRPWRQ+AD+R+F LPS+L D LSRI+ N
Sbjct: 4   YGTIPT-SSAAAANLEYISRAKQRFKDGLGHRRPWRQIADYRSFALPSNLHDTLSRIKFN 63

Query: 63  LAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAI 122
           LAYFRMNYA+VVLVIL L+L++HPISL+VL LM +LWLFLYFLRDQPL+LAGR+++DW I
Sbjct: 64  LAYFRMNYAIVVLVILFLSLLWHPISLLVLFLMLSLWLFLYFLRDQPLILAGRVIEDWII 123

Query: 123 LLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPGS 182
           LL+LS+ T+GFL  TNAT NIL+A+L+GAAVV AHAAVRKT++LYLDEE+A GL+APGS
Sbjct: 124 LLVLSLLTIGFLFLTNATPNILIALLVGAAVVLAHAAVRKTDNLYLDEEEATGLIAPGS 181

[Close]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.3e-39
Identity = 96/179 (53.63%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 3   YGTIPTSS-SAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRT 62
           YG IPTSS  + A   EYIS+AK R K GL  RRPW+ + D  +  LP    DA+SRI+T
Sbjct: 4   YGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKT 63

Query: 63  NLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWA 122
           NL YFR NYA+ VL IL L+L+YHP SLIVL+++   W+FLYFLRD+PL++ G  + D  
Sbjct: 64  NLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRT 123

Query: 123 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 181
           +L+ LSV TV  LL T+AT NIL ++L  A +V  HAAVR++++L+LDEE AA   A G
Sbjct: 124 VLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASG 182

[Close]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-38
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 3   YGTIPTSSSAA-AATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRT 62
           YG IPTSS A+     E +S+AK R K GL  RR WR + D  +  LP  + DA +RI+T
Sbjct: 4   YGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKT 63

Query: 63  NLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWA 122
           NLAYFRMNYA+VVL+++  +LI+HP SLIV  ++  +W+FLYFLRD+P+ L    + D  
Sbjct: 64  NLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRT 123

Query: 123 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA 174
           +L++LSV TV  LL TNAT NI+ A++ GA +V  H+ VRKTEDL+LDEE A
Sbjct: 124 VLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot
Match: Q9LIC7 (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.5e-35
Identity = 90/169 (53.25%), Postives = 116/169 (68.64%), Query Frame = 0


Query: 6   IPTSSSAA-AATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTNLA 65
           I TSS A+ A   E IS+AKQR KDGL  RR WR + D  +  LP  + D  SRI+TNLA
Sbjct: 7   ITTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLA 66

Query: 66  YFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAILL 125
           YFR NYA+V+L ++  +LI+HP SLIV   +  LW+FLYFLRD PL +    + D A+L+
Sbjct: 67  YFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLI 126

Query: 126 LLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA 174
            LSV T+  LL TNAT NI+ A++ GA +V  HA +RKT+DL+LDEE A
Sbjct: 127 GLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

[Close]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot
Match: Q9FZ63 (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 0


Query: 2   TYGTIPTSSSAAAATAEYISQA-KQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 61
           TYGT   SS+  A   EYI++   Q  + GL  RRPW+Q+ D  +FN P  L   ++RIR
Sbjct: 3   TYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIR 62

Query: 62  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 121
            N  YF+ NY +VVL  + L+LI++P SL+VL  +   WLFLYFLRD+PL +  R +   
Sbjct: 63  ANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREIDHR 122

Query: 122 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAA 175
            +L+++SV T+  L  T+A LNI VAI+ GA  V +HAAVRKTEDL+  +E+ +
Sbjct: 123 IVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176

[Close]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.2e-26
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 0


Query: 4   GTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTNL 63
           G  P+S+S         ++AKQ  +  +   RPWR++ D  A +LP    +A++ ++ N+
Sbjct: 17  GVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNI 76

Query: 64  AYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRD--QPLLLAGRLVQDWA 123
           +YFR NYAL VL I+ L LIYHP+S+I   ++   W+ LYF RD    ++++G+ V D  
Sbjct: 77  SYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKI 136

Query: 124 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA--AGLVAP 182
           +L+LLS+ TV  L++T+   N+LV+++IG  +V AH A R T+DL+LDEE A   GLV+ 
Sbjct: 137 VLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSA 196

[Close]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL
Match: A0A6J1GBU7 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452555 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.3e-67
Identity = 142/181 (78.45%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D LSRI+
Sbjct: 1   MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLSRIK 60

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 61  VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 120

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAAVRKTE+LYLDEE AAGL+APG
Sbjct: 121 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEE-AAGLMAPG 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL
Match: A0A6J1K8D2 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111492618 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.1e-67
Identity = 141/181 (77.90%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MTYGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 60
           MTYGTIPTSS+ AAA  EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D L+RI+
Sbjct: 45  MTYGTIPTSSATAAANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLARIK 104

Query: 61  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 120
            NLAYFRMNYA+VVLVIL LAL++HPISLIVL +M TLWLFLYFLRDQPL+LAGR+V+DW
Sbjct: 105 VNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVEDW 164

Query: 121 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 180
            ILL+LS+FT+GFL  TNATLNI++A+LIGA VV AHAAVRKTE+LYLDEE AAGL+APG
Sbjct: 165 VILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEE-AAGLMAPG 224

Query: 181 S 182
           S
Sbjct: 225 S 224

[Close]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL
Match: A0A1S3BIR1 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103490013 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 136/179 (75.98%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 3   YGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTN 62
           YGTIPT SSAAAA  EYIS+AKQRFKDGLGHRRPWRQ+AD+R+F LPS+L D LSRI+ N
Sbjct: 4   YGTIPT-SSAAAANLEYISRAKQRFKDGLGHRRPWRQIADYRSFALPSNLHDTLSRIKFN 63

Query: 63  LAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAI 122
           LAYFRMNYA+VVLVIL L+L++HPISL+VL LM +LWLFLYFLRDQPL+LAGR+++DW I
Sbjct: 64  LAYFRMNYAIVVLVILFLSLLWHPISLLVLFLMLSLWLFLYFLRDQPLILAGRVIEDWII 123

Query: 123 LLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPGS 182
           LL+LS+ T+GFL  TNAT NIL+A+L+GAAVV AHAAVRKT++LYLDEE+A GL+APGS
Sbjct: 124 LLVLSLLTIGFLFLTNATPNILIALLVGAAVVLAHAAVRKTDNLYLDEEEATGLIAPGS 181

[Close]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL
Match: A0A0A0LDF6 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G848860 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.1e-64
Identity = 135/179 (75.42%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 3   YGTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTN 62
           YGTIPT SSAAAA  EYIS+AKQRFKDGLGHRRPWR +AD+ +F LPS+L D LSRI+ N
Sbjct: 4   YGTIPT-SSAAAANLEYISRAKQRFKDGLGHRRPWRLIADYHSFTLPSNLHDTLSRIKIN 63

Query: 63  LAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAI 122
           L YFRMNYA+VVLV+L LAL++HPISL+VL LM +LWLFLYFLRDQPL+LAGR+++DW I
Sbjct: 64  LTYFRMNYAIVVLVVLFLALLWHPISLLVLFLMLSLWLFLYFLRDQPLILAGRVLEDWII 123

Query: 123 LLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPGS 182
           LLLLS+FT+GFL  TNATLNIL+A+L+GAA+V AHAAVRKT++LYLDEE+A GL+APGS
Sbjct: 124 LLLLSLFTLGFLFLTNATLNILIALLVGAALVLAHAAVRKTDNLYLDEEEATGLIAPGS 181

[Close]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL
Match: A0A6J1GW95 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111458066 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61
Identity = 133/181 (73.48%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 3   YGTIPTSSSAAAATA---EYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRI 62
           YGTIPTS  AA ATA   EYIS+AKQRFKDGLGHRRPWR +AD+R+F LPS+L D L+RI
Sbjct: 4   YGTIPTSYGAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARI 63

Query: 63  RTNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQD 122
           + NLAYFRMNYA+V+L+IL LAL++HPISLIV  LM +LWLFLYFLRDQPL++AGR++QD
Sbjct: 64  KINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRVLQD 123

Query: 123 WAILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAP 181
           W ILL+LSV T+GFL  TNA+LNIL+A++IGA VV AHAAVRKTE+LYLDEE A GL+AP
Sbjct: 124 WIILLVLSVLTIGFLFLTNASLNILIALIIGAVVVLAHAAVRKTENLYLDEE-ATGLMAP 183

[Close]

BLAST of Sed0016271.1 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-40
Identity = 96/179 (53.63%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 3   YGTIPTSS-SAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRT 62
           YG IPTSS  + A   EYIS+AK R K GL  RRPW+ + D  +  LP    DA+SRI+T
Sbjct: 4   YGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKT 63

Query: 63  NLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWA 122
           NL YFR NYA+ VL IL L+L+YHP SLIVL+++   W+FLYFLRD+PL++ G  + D  
Sbjct: 64  NLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRT 123

Query: 123 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAAGLVAPG 181
           +L+ LSV TV  LL T+AT NIL ++L  A +V  HAAVR++++L+LDEE AA   A G
Sbjct: 124 VLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASG 182

[Close]

BLAST of Sed0016271.1 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-39
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 3   YGTIPTSSSAA-AATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRT 62
           YG IPTSS A+     E +S+AK R K GL  RR WR + D  +  LP  + DA +RI+T
Sbjct: 4   YGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKT 63

Query: 63  NLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWA 122
           NLAYFRMNYA+VVL+++  +LI+HP SLIV  ++  +W+FLYFLRD+P+ L    + D  
Sbjct: 64  NLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRT 123

Query: 123 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA 174
           +L++LSV TV  LL TNAT NI+ A++ GA +V  H+ VRKTEDL+LDEE A
Sbjct: 124 VLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Sed0016271.1 vs. TAIR 10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4 )

HSP 1 Score: 148.3 bits (373), Expect = 6.0e-36
Identity = 90/169 (53.25%), Postives = 116/169 (68.64%), Query Frame = 0


Query: 6   IPTSSSAA-AATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTNLA 65
           I TSS A+ A   E IS+AKQR KDGL  RR WR + D  +  LP  + D  SRI+TNLA
Sbjct: 7   ITTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLA 66

Query: 66  YFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDWAILL 125
           YFR NYA+V+L ++  +LI+HP SLIV   +  LW+FLYFLRD PL +    + D A+L+
Sbjct: 67  YFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLI 126

Query: 126 LLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA 174
            LSV T+  LL TNAT NI+ A++ GA +V  HA +RKT+DL+LDEE A
Sbjct: 127 GLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

[Close]

BLAST of Sed0016271.1 vs. TAIR 10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1 )

HSP 1 Score: 134.4 bits (337), Expect = 9.0e-32
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 0


Query: 2   TYGTIPTSSSAAAATAEYISQA-KQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIR 61
           TYGT   SS+  A   EYI++   Q  + GL  RRPW+Q+ D  +FN P  L   ++RIR
Sbjct: 3   TYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIR 62

Query: 62  TNLAYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRDQPLLLAGRLVQDW 121
            N  YF+ NY +VVL  + L+LI++P SL+VL  +   WLFLYFLRD+PL +  R +   
Sbjct: 63  ANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREIDHR 122

Query: 122 AILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDAA 175
            +L+++SV T+  L  T+A LNI VAI+ GA  V +HAAVRKTEDL+  +E+ +
Sbjct: 123 IVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176

[Close]

BLAST of Sed0016271.1 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-27
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 0


Query: 4   GTIPTSSSAAAATAEYISQAKQRFKDGLGHRRPWRQLADHRAFNLPSSLRDALSRIRTNL 63
           G  P+S+S         ++AKQ  +  +   RPWR++ D  A +LP    +A++ ++ N+
Sbjct: 17  GVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNI 76

Query: 64  AYFRMNYALVVLVILSLALIYHPISLIVLALMATLWLFLYFLRD--QPLLLAGRLVQDWA 123
           +YFR NYAL VL I+ L LIYHP+S+I   ++   W+ LYF RD    ++++G+ V D  
Sbjct: 77  SYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKI 136

Query: 124 ILLLLSVFTVGFLLFTNATLNILVAILIGAAVVAAHAAVRKTEDLYLDEEDA--AGLVAP 182
           +L+LLS+ TV  L++T+   N+LV+++IG  +V AH A R T+DL+LDEE A   GLV+ 
Sbjct: 137 VLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSA 196

The following BLAST results are available for this feature:

BLAST of Sed0016271.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949100.1	4.7e-67	78.45	PRA1 family protein F2-like [Cucurbita moschata] >KAG6606723.1 PRA1 family prote...	[more]
KAG7036438.1	1.1e-66	77.90	PRA1 family protein F2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023525376.1	1.1e-66	77.90	PRA1 family protein F3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997756.1	1.1e-66	77.90	PRA1 family protein F3-like [Cucurbita maxima]	[more]
XP_008447601.1	3.8e-64	75.98	PREDICTED: PRA1 family protein F2-like [Cucumis melo]	[more]

BLAST of Sed0016271.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C889	4.3e-39	53.63	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9LIC6	4.8e-38	52.91	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9LIC7	8.5e-35	53.25	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]
Q9FZ63	1.3e-30	46.55	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]
Q9FRR1	7.2e-26	41.21	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]

BLAST of Sed0016271.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBU7	2.3e-67	78.45	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452555 PE=3 SV=1	[more]
A0A6J1K8D2	5.1e-67	77.90	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111492618 PE=3 SV=1	[more]
A0A1S3BIR1	1.8e-64	75.98	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103490013 PE=3 SV=1	[more]
A0A0A0LDF6	3.1e-64	75.42	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G848860 PE=3 SV=1	[more]
A0A6J1GW95	1.9e-61	73.48	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111458066 PE=3 SV=1	[more]

BLAST of Sed0016271.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55190.1	3.1e-40	53.63	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13720.1	3.4e-39	52.91	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13710.1	6.0e-36	53.25	prenylated RAB acceptor 1.F4	[more]
AT1G17700.1	9.0e-32	46.55	prenylated RAB acceptor 1.F1	[more]
AT1G08770.1	5.1e-27	41.21	prenylated RAB acceptor 1.E	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 31..171 e-value: 1.3E-44 score: 151.3
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 2..178
None	No IPR available	PANTHER	PTHR19317:SF2	PRA1 FAMILY PROTEIN F2	coord: 2..178

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016271	Sed0016271	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016271.1-three_prime_utr	Sed0016271.1-three_prime_utr-LG06:45820262..45820520	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016271.1-exon	Sed0016271.1-exon-LG06:45820262..45821168	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016271.1-cds	Sed0016271.1-cds-LG06:45820521..45821066	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016271.1-five_prime_utr	Sed0016271.1-five_prime_utr-LG06:45821067..45821168	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016271.1	Sed0016271.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane