Sed0014799.1 (mRNA) Chayote v1

Overview


Name	Sed0014799.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG01: 7753465 .. 7765087 (-)
Sequence length	757
RNA-Seq Expression	Sed0014799.1
Synteny	Sed0014799.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTGTAATATCCACTGCCTCAGATTACTTTCTTGTGATTCTTTCAACTTCTTTTGGTTTTCCGGTGACAGTTTTCAGTTCCGATGGATACCGGCGGCAAGTTGAAGAAGGGAGCTGGTGGCCGAAAGGGCGGCGGCCCGAAGAAGAAGCCAGTTTCTCGCTCCGTCAAGGCCGGACTCCAGTTCCCCGTCGGTCGTATTGGTCGATACTTGAAGAACGGCCGATATGCTCGACGTGTCGGCACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTAGCCGCCGAGGTATTGATGAACTCATTTTCCTCTCTTAGATCTGTGTTTCTTTCTGTTTGATGTAGACGATTCGGATGAGTTTTCATATCTCTTAGTTTAGGGCTTTGAGTTTAATTCTGGATCTAGATTCATCGATTGGATGTTACTACCTGTATTTTGCTATTCTATTAGGTGTATTATGATTCAGTGATTGCATAAGTTTTAGAATCCAAAGAACTAAAGAATAATGAACACTGATCTAATGATCTTGTATTGTGTAATTTCACTTTCAATTCGCGATGTCTGCAGGCAGAGCTCAGTTATTGGTTAGATTGTTGAATTCAGCTTGATTCACTTGATAGATTGACCTAGGTATAATGGAATCTTAGGGTTTATGATCTTGAACCTACACTTGAAAGCTGGTTCTTCTGTAAAATCATCTACAAATTGCATGTTTGTGATCTCTAATCTGAATAAAATTGTGGGAAATTAGGTGCTGGAGTTGGCTGGAAACGCAGCTAGAGATAACAAGAAGAACAGGATAATTCCAAGGCATGTGTTGTTGGCCATAAGAAACGATGAGGAGCTTGGAAAATTGCTTGCAGGTGTAACAATTGCTCATGGCGGCGTTCTTCCCAACATAAACCCAATTCTGTTGCCAAAGAAAAGTGACAAAGTAACCGCGAAAGAACCAAAATCTCCATCAAAGGCAGCTTCCAAAGCAACAAAGTCCCCCAAGAAGGCTTAGGTTTTTCCCCTTTTAGTTTGATGAAGTCCGGACTTTTTTTCATTGTTCATTTGTATGTACTTTGTTGGCATTTTAGGATCTTCTTCCTTGTTGTTTATCAGTGTATGCTCTGAATGGATGAATTTGGAGACCTTGTATCACTGTTGCCATCTTAATGAATCTAATTCTGTACTGGTTATGATTGTTTAGCCATCAATTCATTTCTTTCATTCTGCTTGATTTTTTCAAGTTTAATTTATGGGGTTGCAAGCATGCTTTATTTTTTATCGTTTGATGTTTGAACCCTCGCTCTAATTTTTCCATAAGAAGTTAAATATCTGGTGACAAATTCAAATTTTCATGTTTAAGATGAGGGAATTCTTATTTTATGTCATTTGAATCTTTCATAATCATTTTGTTTATGAAATTTAAGTTTATTTCTTTTCGATTTTCTTACCATGTATTTCTTTCTTACAATGTATCCATCTTTTCTTAAAAGAATAGGAGAATATTAATCAAATTTTAAAAATATAAACAAGTTTTTTGAGTTACTTTTTTTGTTTACAAATTTTGATTTTTTTTAATTAAAATATGAGTAAAATGTAGATATCCAAATAAGAAAAAAAGTATAACAAGGTAGTTGTTGTAGATTTAAATTTTATAAATAAAAAACGAAAAACAAAATGGTTATCAAACGGGACTTTAAAATTTCAATTTCATCGGATGATTTTAAACCACAATTTTATCCTCACAACCTCTCTAAGAAACTGTGCGCTCCAAATTTTAGACTGTCCAAGATATTCTCTCAATTGACTCTAAATAAATATTTGGAACTAATATTAAGTTGAGGATTCAATTGTCTCAAGTTGATAAATATTTGGAACTAATATTAAGTTGAGGATTCAATTGTCTCAAGTTGAAGATAACTGATGGCTTTTAAGTCGATCATCTAGCTTCTAATAATTCATCGTTGAAGTTAGATTCAACCTGGGCCTTGTTTGGTTTGCTATTTGGAATTCGGGATTTTGGATTTGGAATCGGTGGAATTTGAAACTGTTGTTTGATAAATATAAAAATTGCGGGGGTTTGGAATCCGGGGATTTAGAAACCTAAACAAAGCAAACGACATTCTTTATTTTGGAGTATCAATACAACAAATCAAATGTCGTAATCAAAATTCCGTAGAATTTAATTATGGTAGTGGATTTTGGGGAATCCACCCAACCCGCAAGCCAAACATAAGTCTTTGGAGGAAGTAAGATAGTAATGATTATAGGGAAATGAGAATTAGTGAAAGAATATAAAGTAGAATGATTGTGAGTAGAATAATTATTTATATTTGAGGTGAATTTAATGATTATGAAAAAATGATTATATATGTTTGAGATGAAGAAAATGATTATGAAAAAAATAAAATAACGAGTATTATTATAGTATAAACTAGTAGTTATTGAAAGTAGCTCTGGTGTTTTTGTTCCTCTATCTTTCTAGCTTGTGTTTCTGTCGACTTCGATTGTACCTCTTGCCTTGATACTCAGCATTCAACAATTGGATTTTGTGTCTTGTTTGGGAATTCCTTGGTTTGTTGGAAATCAAAGAAAAATTCCATGGTTTGGCCTCCATAGATTTTGCTATTTATGAGCTTGTTTGGCTTTGGTCTCTTTTTCATGGGTTGTTCATTTCCCTAATTCTATCACCTCTGTTTTATGATAATTAGATGGTCGTACATAGCTTCCAATCCAATGTTCCATGAATGAATCAAACACATCGAATTGGACTATTACCTTGTAAGGGACAAATCACAAGATGGCTATTAGAGAATAATAATGGCTCTCTCAAATTCCTGCCAATCTGCTATGAATTCCAACTTGATAATGAATAATTTCAACGATTTCTTGACAAAGCGCTACTCCCAGCTTTGGTTTAGAATCTTCTGCTCACCAAGCTTGGTATTCGTGATATTTTCATCCCATTTTGAAGGGAAGTATTACTTTTATTAAGTTGGTAATCAAATAGACTTGTAATAACTTAGCCTAATTAGTATAGTTAATTAAATTAGATTATAAGCTATGTGTAGTTAATTGATAAATTTTATAGTTAGTTATGAGATGTAATTCCAAAATGAGTTTATTCAGTACCTCCTTATGTACCTTGCCAAAAGGGGTTGGATTATTTCTTTGTTGCAACTTGCTCTAAACTAGGAAGCTCTTGCTAAGACAAACTCTTAACTTTCATGAATATTAACTCCCAAATCAATTTGATTTCAAGCTTGAAGGTCAGATTAGATTCATATTATTTTAAAATCAAGTTCATACAATTTGAATTCTCTTTACAACAGACAACAGTCACTTTGTTATTCTTGGTCTCTCAGTAAGCTCCCACAAATACAATCTTTTCTTTTCAATCGACTCAGTGAGAATAAGAGCTATTCTCACATCTCTTCACACGCTTGGATCTGCTCGCATGTGTGGGTTCACAATATTGGGATGCGACTACTAATTCGAGTACATGAAAAATTAGGAGGACTCCAACAACATATCTCTTTTGATAGTTAATTTATTAGTATGTCAGTGGAATTAAGTTCACTTCAATGCTATTACTAAATATGAGAAGATTTAAATCCAACGATAAAATATAAAAAGGAGCTCAAAACTCAGTTTATTTACATTTAAGACGTGAATTAAAAAAAACACAAAATTTTTTAAATAACAAACTCTTGAAATTTATAAGAATACAAAAAAAGGAAAAAAAGAAGACAAGTTAATATACATATTATCGGTCAAAAGCAGCTAACACCGACTTAAATAGTACAAAAACCTGATTAGAAACCCAAACGGTGTGTTTGGGCTACCGTTTATGCAAACGAACGGGTTTGTTATAATAACCAACCGATGTTTGCACCAATATTTATTACAAACGGTGGTTATTTAAACCTGCGTACCCGTTTATTTAAACCTACGTGTCCGTTTATCTAAACCTTATACATACATACATATATATATATATATATATATATATATATATATATATATATATATTACTTTTTGTTACATAATTAGCCCCTCAAACACCGTTTATCATAATCCGTATTATAATAATTTGCCTCTCAAACACTATTTATAATAACTCATCGTTTATCATAACCCACCGTTTATTATAAACTTCCGTCTATCATAGCCAAACTGGTGCTCTAAACACACCCAAAATGTGGAGGTGGAAACCAAGTGTAAGGGACCGACCCGAATGGGGCACTAAATGGGCCCTTACCCCAATGCATGCATTCAAAGTAAAGGACATTTAAACAGACATGATTTCGGATTCCAATTAAAACAAAACATTCAAAATAATCCCTTTAAAAAAATGGACAATTTCCCTGGAACCTGCCCCTGTTTCCACGCACATGTTCCAAGATAAATACATTTCCAAAGTTTACTCTGATCAGAGATTTACTAAAACCATTCAAAACCTGTTCAGATGCAAAATGCTGGAATCCACAAATATTTACAAACATCCTAGGGCTCGTGTCCGTCCACATGCATTCAGGGGAAAACAAAACATAAAGAGTCATAATACAAAAATCGAGTTGGAAGATCGGGCCCCATGATCACAAATTTCCCTCCTTCAGCCATCCTGTCTCGCAACTTGGTTACCTGTGGAAAAACCACAGTAAGAGTGAGCAACGAATTGCTCAGTAAGAATCCCCAACCGGGGTACAATACGATATACATGGTCATCTCGATAAGCGTATGCAAGCTATGAATATAAACACAGAATAGAGCACATAGCTTAGCCCACACTTGGGCCTCGGATGCCAACTAGGGTCTTAGTCCGGAAATAATATCACACACAATCGCCTATCGAGAAAACAAGTCTCGGCCTCACTGCTCTCATCGTCGACGAAAGGTACACTGGCTCACAATCCCGAGGAGCTCTCCAGTCGGCGCTGTAATGAGCGTAAGCATGCACCGCGTGCTACTGCAGACCATGGGGGGGTTGCCGGGTCTGAAGGCAAGTTGCCCATGTCCAGTCACCACGCCTAACTAAATCTTTGGATCGGTGTCACTGACATAGGGGTGTGAGACCTGGACACGTAAACTATGTCAGCCTGAACCACCGCACCTGGGGCCAAGGAACGGTCGTGGTAGGCTTACACCGTGAAGCCGCCCTTGCCTTAACAGTGGCAATCGGGGGCTCTTGCCAAACATGCCGAGGACATGCCGGCGCCGGGGCGAGGCAATGCCAAGTCATCATCCCGACCGTTGGGGCATTAACAACTGCCTCCCTCACCCAAGATTGCAGGGCCTACCGCTTGGGTTAGCTAATCCCTCACGGGGTCCAGGGACGGAATGACTTGCTCGACGTCCCTGCCATGGATGCAAGGTACTTTATGCATCAGGCCCGGATGATGCTATCTACCTGCAATTCTAACCTGCCCTAGCAAACAGCAAACAATTCCATAAAACCCAATACGTGCTCAATAAAAATACAACGAGCCTAGCATGATACTACGAAGCAAGGAACAGATACGATCATGCTAGAAGGGAACAACCTAGCATGGATTAACACGAGAATTAAATCAGGAAAATCATGCTAATCGGGAATTCAGAATAGAATACCTAGCTACACATGTCAATAAACACAAACAAGCATTCAATCAGCAATCACATATAATATCGTAGGGCCCACACAACCCCGGTAAGAAATCCTTACCTTGGTCGGGGACGATTTGACATGAAATCCTAAATTGCGAATGAACCCGAACTAGCTACCGAGAACCTATCAATCACAACAAAAATCACACAATAGGCCTAAATATAATAAAATAAATGAGGCTCAGCTCGGGAGCAACTCACGAGGCACGACGAACGCACGAACGAGCCGATTGCACGAACGGGGCAGCAACGGGGCTGGCTGGGCGCGCTGGGGCGCAGGAGTGGGCGCGCGAGGGCGCTGGCTGAGCGCGACGGGCGTCGCGCGCGACACGAGGGCAGCGTCGCGACGCGCGCAAGCGCTCGGCTGGCGGTGGCGGCGATGCGACGCGACACGGAGCTGGCGAGGACGCGCGCGCGGGCACGAGGCGATGCGCGGCGTGGCTCGGCGGAGCGCTCTGCTTCTGCGCGCGGCGACGGGGCGAACAGGGGGCGATCGAGAAGGGAAAAAACGAGCTCGAATTCGAGCGATTGGTGAGGATTCGACGGCCGATTCGCTGATGGCTGGAATCCCCTACACTGGCTGCACGAAAACCACGCAATTCCCTCACTCTCTCGGCCAGCAGAACTCGAAATCGGAAACAGGGGAGGGCAGGAAGGAGAAGAAGAAGGAGAAGAAAACGCTCACCTGCTGCTCGGGAAGAGATCGACTTCGAATTTGGAGAAGAAGCTCGGTCGAAATGGAGCTGGAGAAGGACGGAATTGCAAGGAAAAGCTCGGTCGGTCGGGGAGAAAGGGAGAAGGAAAATCGCGAGGAAGAAGAAGGAGGAAGAAGCTTCGGGCGAAAAATTTCCTTTTAAACCAAAACTCGCGTCGAACAGGTTCAAATAGAAAATGGCGCGTTTAGGAACACAAGAGCGCTTAGTGGCTCAATTGGCAGTGCCTCCTGCCTAGCACGTGACACGTCCTTGGCTCGAATCTCACTCGACGCGCTATTTAATTCTCTATTTATTTTTACCTTTTTCCAAGCCCAAATGCCTTCACCAAAAATCCCGATCCTTTTCGAATTGACTCATAATTATTCCGGCAATTTTCAATTTCAAAACCGGCCCTGTCGGCCCGACCCAAAATTACCAAAATGCCCCTGGGCCTCCCGGGAAGACCGGGATCAAATTTCCGGGCCGTTACACCAAGCCAAATCTTTCGGGGTTGGCTGGGCCAAGCCGAGGCTTGACCATCATGGTTTTAGATTTTACAAGTAACCATTTTCGGAGCTCATTATATGTTGAATGTATGGCGAGCAAGTGAAAGAACACAAGAATAAAGGAAGAAACGGCAAATGCAACGTAAAGACAGAAAGTAGTTTTTTTTCCATAATTTTTTTTTGAAATTAAATCTCAACCATTATAAATCAATGACAGTTACAAAAAAAGGAAAATTTTAAAAATAAAGCAGATTATTCATTTTGGAAAGTTAGTAATATGAGAAAAAACACTGTAAACATCAAATCAATATTTTATCTCACTTCCAAATAATATCATCTGGTCAATACAAATTCATCATTAACCATTTTTGACATCAACAGTATGGATGCCTAAACTATCTATCATTTATCTTAAAAATTTGAAACCCACTCCTACATGCTGAGAAATAATAATAATAAAAAACAACCGTCAATTTCGTGTCTTCTAAGTCATTTTTATCCCATATTCGACATCTTATGAATTTTCTCATAGCCTCTTATTATTTTGTTCACCAAACTTTACATTCCCTCTTTTTCGATGCCAACTCACATTGTTTCAAAGTTTAATTTTGTGCAATTTTTATTCACTGTCTCAAGAAGTTCCAGAAATGAGTATGCTCATATGGTAGGGTTGAGTTTATAAGTTAAAAGTTTAAATCCCATTTAATAACTATTTCGTTATTAATTTTTTGTTTCTCTTATTAATATTTTAAAAACAGATTTATTTGATAAACAATTTTGATTTTTGTTTATAAAATTTTAAATTTTTTTTAAAGATATTAAAGAAATTTTAAAAACTAAAAAAAGTAACTTTTAAATACAAGTTTTTATTTATTTATTATTTTTTTTAAAAGCATGTAAATATAAAAAAATAAAGAGTAAAAAATTAATAAAATAAAAATAAAATATAATATTTGAAAACAAAAAAAACAGTTATTCAACTTGTTTTAATTTTTTTATCTTAAAAACAAAAAATTAAAACCAGTTATCAAATATATACGATTTTTATTTTTTAAAATAAAAAACAAAAAATAAAAAACTAGAAACAAAAAATAAAAAACAAAATAATTGACTTTAGTGTTCAAAATTTAGATGAATATTCACAAATTCAAGAGTTTCCTTATTTTTGCATCCATAAACATTTGGATGAAACCTCTTACTTAACAACAATCCAATAATTATTTGAGACAACAAATTTTTTTTTTTTAAATAGTTGAGACAACAAGATATGTTTATACGGATATCTCTAGTTCGAGATCGCTAGCTTGAAAGCGCTTAAATTAGAAAATTCTTAATGTATGTCTGTATCACAATCTAGCTACGACAATAAACCTTAGGATGTACATGATTGGGTTAGATCGAGGGAAATAAAACACAAATATAAAGCTAAAATGGCCCAAGCCTAGTCATAATTGAACTAAATTATAAAAATTAGACATTTTCTTTGGGGGTGGTTCACTTCGTGGTAATCAAAGATTCTCATGAGATGGGCATCTGGATTACCACCTTTCTTTTATAGGAATAAAAAAAAAATTCAGGCATTCTGAGATGCTTGGCATCCTAGGATGCCCATCTAAGTGTAATTTGGGTGCCCTCCTCATCATGAGCTTTAGGATGCCCATGTAGAGGACATCCTTAAAAGACACTTTTCCCCTTACAATTTTTTCGATAAAATTTTATATTTTTATCAATTTTTCCCTATATTTTGTGTGTAGTTGTACCTTAAAAATAATAATATATATTTTTTTAGTACATAATTATTATTCATTAACAACTAAGCATACATAATTAATTATATTTATATTTTACGTTTTGTTTTAAATGCATTAAATTTAATAATATTTTGATTATTTTCAATAAAACCATTTGTGTTGAACTGTTTTACAACCAAACAATGAAACCATTGCGCCATTGACCCATTCGATAAAATGATATATAAATTTTAGTTATACAAATTAATGTGTACATTAAGTTATGAGAGCATTTAAGACATTTTCACGAACAAAATTTATAAAATAAATACAGTTTTCAAAATTTTCATAAAAATATTATTACAAAATAAATGTGGTGATCTAAGAATGCTGTACATATGAAATTTCAGACACGACATTTGAAAATTCTAGTTATCTTAATTACCACAAAGTAAACGATAGGGGTGTACATGGTCCGGGTTGAGTAGGGTTGAATAAATTTTTTGGACCAACCCAACTTTTCAGGTTGGTCAATTCGCCAACCCGTCCAACCTTATGCATAAGAGCAACCCAACCCAAGATTTCCGGGTTGGGTTGGGTTCTCGGGTTATGTTACTCTTATTTTTCTCTCTAAAGTTTAGTTCATATAGGTTTATAAATATGTTAAAAAAGATTGATCATACTATACTTTAACCTATTACCAATCTTATTAGTGTTATAATTTTTTTTAGAAGTCTTACAAGTATGCTAAAAATCTATCATAATATATATAATATATTCTTAGTTTGAGTTGGGTTGAACAAACCCAACCCAAGAACCAACCCAACCCAATAAAAACTATAAAATCATAATCCAATCCAACCCAACCGTTACGGTTTTGGTTGGGTAATCCGGATTGCTCGGGTTGACGGTTTTTTTGTACATCCCTAGTAAACGACCCCTTATATAAATTAACTAACATAATGCTTAATCAAACCACTCAACAAAAACGAGTGTGTTTCTTTTCTTAGATATATTTTTTTAGTTCAACTATAATAAAGATGGGAGATTCAAATTATAAGCTTACACACTTATACAAGTCAACTGAATAATTTCTCCGAAAGTATCAAATCACCTATGTCATTTGTTGGTCATGATGCTTGTGCGTTCTACAATTTGGGTATGGCAGTGTTTCTATTTAGAGCCTAAATTTAAGATGTTTATTACATTTAAATGCGGGCAATCATTGAAGGAAAAATATTCAAAAAATGAATCGAAAGTATTTTTATGATTTTATAAAAAAATAAATAGAATAAATCATCACGATCTTACAAGTTGACTCGGGCCATACAAATTGTGTAGACATCTTTTTTCTTACATAACTAAGCCTAAAAAATATGAAATTTGTTAATAATAACAAATTTTATTATTTATATTTTAATCATAACAATTTTTAAAATATTTTAATTTTTATTGTTTTTAATCAATTCATTCACTTTAATTCAAGTCATCAATTTCTCTTGATTGAAATTGTCATTTTTTTTTATCATATTAAATTTGATTGAATCAACTTCTTACTGTATTCAAATTTATTTTAAAATTTTGGCATACAGTTTTTTTTAGTTATTCACCAAAAATTCCCTTAAAATATAGTTTCTAAAACATCCCAAAAAGGCAAAACAAAATCTCTACATGTCCTCATTTCTGATTGGTTCATTTTAAGAGACGCGGATCACTCTACAGTCTATTAACACCCGTCGATTTAAATGTATCCTACGGTCAAACGTTCACCCATTTCCCAATCCGTTCCCTTCCCAAATTGCCCTCTATATAATCCTTCCCGCAAAATTGAAGTTTCTCATTGCAATATCCACTTCCTGTATTTCTTTCAACTTCTTTTGGTTTTCCGGTGACAGTTTTCAGTTCCGATGGATACCGGCGGCAAGTTGAAGAAGGGAGCTGGTGGCCGAAAGGGCGGCGGCCCGAAGAAGAAGCCAGTTTCTCGCTCCGTCAAGGCCGGACTCCAGTTCCCCGTCGGTCGTATTGGTCGATACTTGAAGAACGGCCGATATGCTCGACGTGTCGGCACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTAGCCGCCGAGGTATTGATGAACTCATTTTCCTCTCTTAGATCTGTGTTTCTTTCTGTTTGATGTAGACGATTCGGATGAGTTTTCATATCTCTTAGTTTAGGGCTTTGAGTTTAATTCTGGATCTAGATTCATCGATTGGATGTTACTACCTGTATTTTGCTATTCTATTAGGTGTATTATGATTCAGTGATTGAATAAACTTTAGAATCCAAAGAACCAAAGAATAATGAACACTGAGCTAATGATCTTGTGAAGTTTGAGCCGCTATTGTGTAATTTCACTTTCAATTCGCGATTTCTGTAGCCAGAGCTCAGTTATTGATTAGATTGTTGAATTCAACTTGATAGATTGACCTAGGTATAATTGAAAATTAGGGTTCATGGTCTTAATCTTCTACTTGATAATCGTTTCTTCGCTAAATCATCTACAAGTTGCATGTTTGAGATCTTGAATCTGTTTAAAAATTGTGGGAAATTAGGTGCTGGAGTTGGCTGGAAACGCAGCTAGAGATAACAAGAAGAACAGGATAATTCCAAGGCATGTGTTGTTGGCCATAAGAAACGATGAGGAGCTTGGAAAATTGCTTGCAGGTGTAACAATTGCTCATGGCGGCGTTCTTCCCAACATAAACCCAATTCTGTTGCCAAAGAAAAGTGACAAAGTAACCGCGAAAGAACCAAAATCTCCATCAAAGGCAGCTTCCAAAGCAACAAAGTCCCCCAAGAAGGCTTAGGTTTTTCCCCTTTTAGTTTGATGAAGTCCGGACTTTTTCATTGTTCATTTGTATGTACTTTGTTGGCATTTTAGGATCTTCTTCCTTGTTGTTTATCAGTGTATGCTCTAAATGGATAAATTTGGAGACTTTGTATCACTGTTGCCATCTTAATGAATCTAATTCTGTACTGGTTAAAACTTTTTAGCCACCAGTTTGATCTTTTAA

mRNA sequence

CTCATTGTAATATCCACTGCCTCAGATTACTTTCTTGTGATTCTTTCAACTTCTTTTGGTTTTCCGGTGACAGTTTTCAGTTCCGATGGATACCGGCGGCAAGTTGAAGAAGGGAGCTGGTGGCCGAAAGGGCGGCGGCCCGAAGAAGAAGCCAGTTTCTCGCTCCGTCAAGGCCGGACTCCAGTTCCCCGTCGGTCGTATTGGTCGATACTTGAAGAACGGCCGATATGCTCGACGTGTCGGCACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTAGCCGCCGAGGTGCTGGAGTTGGCTGGAAACGCAGCTAGAGATAACAAGAAGAACAGGATAATTCCAAGGCATGTGTTGTTGGCCATAAGAAACGATGAGGAGCTTGGAAAATTGCTTGCAGGTGTAACAATTGCTCATGGCGGCGTTCTTCCCAACATAAACCCAATTCTGTTGCCAAAGAAAAGTGACAAAGTAACCGCGAAAGAACCAAAATCTCCATCAAAGGCAGCTTCCAAAGCAACAAAGTCCCCCAAGAAGGCTTAGGTTTTTCCCCTTTTAGTTTGATGAAGTCCGGACTTTTTCATTGTTCATTTGTATGTACTTTGTTGGCATTTTAGGATCTTCTTCCTTGTTGTTTATCAGTGTATGCTCTAAATGGATAAATTTGGAGACTTTGTATCACTGTTGCCATCTTAATGAATCTAATTCTGTACTGGTTAAAACTTTTTAGCCACCAGTTTGATCTTTTAA

Coding sequence (CDS)

ATGGATACCGGCGGCAAGTTGAAGAAGGGAGCTGGTGGCCGAAAGGGCGGCGGCCCGAAGAAGAAGCCAGTTTCTCGCTCCGTCAAGGCCGGACTCCAGTTCCCCGTCGGTCGTATTGGTCGATACTTGAAGAACGGCCGATATGCTCGACGTGTCGGCACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTAGCCGCCGAGGTGCTGGAGTTGGCTGGAAACGCAGCTAGAGATAACAAGAAGAACAGGATAATTCCAAGGCATGTGTTGTTGGCCATAAGAAACGATGAGGAGCTTGGAAAATTGCTTGCAGGTGTAACAATTGCTCATGGCGGCGTTCTTCCCAACATAAACCCAATTCTGTTGCCAAAGAAAAGTGACAAAGTAACCGCGAAAGAACCAAAATCTCCATCAAAGGCAGCTTCCAAAGCAACAAAGTCCCCCAAGAAGGCTTAG

Protein sequence

MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA

Homology

[Close]

BLAST of Sed0014799.1 vs. NCBI nr
Match: XP_004149043.1 (histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis melo] >KAA0033912.1 Histone core [Cucumis melo var. makuwa] >KGN65668.1 hypothetical protein Csa_019600 [Cucumis sativus] >TYK01294.1 Histone core [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K T KEPKSPSK A KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSK-APKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. NCBI nr
Match: XP_038895656.1 (histone H2A [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYARRVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKHGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K  AKEPKSPSK ASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAAAKEPKSPSK-ASKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. NCBI nr
Match: XP_022134450.1 (histone H2A-like [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K   KEPKSPSK  +KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAVTKEPKSPSK-VTKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. NCBI nr
Match: XP_022964993.1 (histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] >XP_023520345.1 histone H2A [Cucurbita pepo subsp. pepo] >KAG6583464.1 hypothetical protein SDJN03_19396, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019222.1 hypothetical protein SDJN02_18180 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 5.6e-69
Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K   KEPKSPSK ASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSK-ASKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. NCBI nr
Match: XP_022997818.1 (histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita pepo subsp. pepo] >KAG6607207.1 hypothetical protein SDJN03_00549, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036893.1 hypothetical protein SDJN02_00513 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 141/154 (91.56%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD  GKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY+
Sbjct: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K  +KEPKSPSK   K  KSPKKA
Sbjct: 121 NPVLLPKKSEKAASKEPKSPSK-TPKGAKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-66
Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MDTG KLKKGAG RKGGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRYA+RVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTA---KEPKSPSKAASKATKSPKKA 155
           NP+LLPKK++K  A   KEPKSP    +KATKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSP----AKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.3e-63
Identity = 133/157 (84.71%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKSDKV--TAKEPKSPSKAASKATKSPKKA 155
           INPILLPKKS+K   T K PKSP    SKATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSP----SKATKSPKKS 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 129/156 (82.69%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD   K KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDK--VTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKK+++    +KEPKSP     KA KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPK---PKAGKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-62
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 4   GGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAV 63
           GGKLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+R+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPI 123
           LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP+
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKKSDKVTA---KEPKSPSKAASKATKSPKKA 155
           LLPKK+ +  A   KE KSP KAA    KSPKKA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKAAG---KSPKKA 159

[Close]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-62
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 4   GGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAV 63
           GGKLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+R+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPI 123
           LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP+
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKKSDKVTA---KEPKSPSKAASKATKSPKKA 155
           LLPKK+ +  A   KE KSP KAA    KSPKKA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKAAG---KSPKKA 159

[Close]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL
Match: A0A5D3BQ44 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K T KEPKSPSK A KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSK-APKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL
Match: A0A0A0LV77 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K T KEPKSPSK A KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSK-APKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL
Match: A0A1S3C5R1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K T KEPKSPSK A KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSK-APKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL
Match: A0A6J1BYB9 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111006694 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K   KEPKSPSK  +KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAVTKEPKSPSK-VTKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL
Match: A0A6J1I2Z0 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.7e-69
Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           NP+LLPKKS+K   KEPKSPSK ASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSK-ASKATKSPKKA 153

[Close]

BLAST of Sed0014799.1 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 241.5 bits (615), Expect = 4.4e-64
Identity = 133/157 (84.71%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKSDKV--TAKEPKSPSKAASKATKSPKKA 155
           INPILLPKKS+K   T K PKSP    SKATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSP----SKATKSPKKS 153

[Close]

BLAST of Sed0014799.1 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 228.0 bits (580), Expect = 5.1e-60
Identity = 133/181 (73.48%), Postives = 142/181 (78.45%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIAHGGVLPNINPILLPKKSDKV--TAKEPKSPSKAASKATKSPKK 155
           +RNDEELG LL GVTIAHGGVLPNINPILLPKKS+K   T K PKSP    SKATKSPKK
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP----SKATKSPKK 177

[Close]

BLAST of Sed0014799.1 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 204.5 bits (519), Expect = 6.0e-53
Identity = 115/155 (74.19%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           M++ GK+KK  GGRK  G PK K VS+S+KAGLQFPVGRI R+LK GRYA+R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPILLPKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           IN +LLPKKS    A+E     KA     KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEE-----KATKSPVKSPKKA 150

[Close]

BLAST of Sed0014799.1 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0


Query: 6   KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLE 65
           K  +GAGGRK GG +KK VS+SVKAGLQFPVGRI RYLK GRYA R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPILL 125
           YLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIA GGVLPNINP+LL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKSDKVTAKEPKSPSKAASKATKSPKKA 155
           PKKS   +++  K      + ATKSPKKA
Sbjct: 129 PKKSTASSSQAEK------ASATKSPKKA 150

[Close]

BLAST of Sed0014799.1 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 10  GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLEYLAA 69
           G G   G G  KK  SRS KAGLQFPVGRI R+LKNG+YA RVG GAPVYLAAVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPILLPKKS 129
           EVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

The following BLAST results are available for this feature:

BLAST of Sed0014799.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149043.1	2.3e-70	95.45	histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis me...	[more]
XP_038895656.1	5.1e-70	94.81	histone H2A [Benincasa hispida]	[more]
XP_022134450.1	1.5e-69	94.16	histone H2A-like [Momordica charantia]	[more]
XP_022964993.1	5.6e-69	94.16	histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] ...	[more]
XP_022997818.1	2.4e-67	91.56	histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita ...	[more]

BLAST of Sed0014799.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M531	2.1e-66	87.26	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q9LZ46	6.3e-63	84.71	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q2HU65	1.4e-62	82.69	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2WQG7	5.3e-62	85.71	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	5.3e-62	85.71	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]

BLAST of Sed0014799.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ44	1.1e-70	95.45	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=...	[more]
A0A0A0LV77	1.1e-70	95.45	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1	[more]
A0A1S3C5R1	1.1e-70	95.45	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1	[more]
A0A6J1BYB9	7.2e-70	94.16	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111006694 PE=3 SV=1	[more]
A0A6J1I2Z0	2.7e-69	94.16	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1	[more]

BLAST of Sed0014799.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	4.4e-64	84.71	histone H2A 12	[more]
AT5G02560.2	5.1e-60	73.48	histone H2A 12	[more]
AT5G59870.1	6.0e-53	74.19	histone H2A 6	[more]
AT5G27670.1	1.9e-51	75.84	histone H2A 7	[more]
AT3G20670.1	1.3e-44	75.83	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 80..94 score: 73.78 coord: 51..66 score: 86.43 coord: 66..79 score: 89.46 coord: 108..126 score: 72.58 coord: 22..44 score: 69.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 e-value: 5.0E-79 score: 278.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 23..128 e-value: 1.4329E-65 score: 193.706
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 100..132 e-value: 1.2E-17 score: 63.4
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 20..97 e-value: 9.5E-12 score: 45.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 10..137 e-value: 6.8E-63 score: 212.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 25..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..154
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..145
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 7..145
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 30..36

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014799	Sed0014799	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014799.1-exon	Sed0014799.1-exon-LG01:7753465..7753926	exon
Sed0014799.1-exon	Sed0014799.1-exon-LG01:7764793..7765087	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014799.1-three_prime_utr	Sed0014799.1-three_prime_utr-LG01:7753465..7753671	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014799.1-cds	Sed0014799.1-cds-LG01:7753672..7753926	CDS
Sed0014799.1-cds	Sed0014799.1-cds-LG01:7764793..7765002	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014799.1-five_prime_utr	Sed0014799.1-five_prime_utr-LG01:7765003..7765087	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014799.1	Sed0014799.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003723	RNA binding