Sed0014030.1 (mRNA) Chayote v1

Overview


Name	Sed0014030.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG01: 4307429 .. 4309433 (-)
Sequence length	1103
RNA-Seq Expression	Sed0014030.1
Synteny	Sed0014030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCAGTGTGTTTTTGGCTGTGGCAGAAGAGACAGAATGTAACCATGGTTAGAGAACGTGGGTTAATCTAGTTTCCTTCAGAACCGGAGTGTAATTTGGGTCTGTCAAGAACTCAGGCTGCTGTGTATAAAATCCTTTTGTCATTACCAAACCATTCAAAAAAACCACAGAAATGAACATCTCATCCATTTCTTGAATCCTTCTTTTCTCATCTCTCTTCTTCCATGGTGTGCTTCTGAGATTTTAGTATGGTTTCTTCTTTCTTGTTCATCTTTTGGTGTGGATTCTAGATTGGGATTGTGATCTTTGTTTCTTTTGCTGTTTTGGGTTCTTCTGGTTTTTGGATTTTCTTTCTGGGTTTTTAAGGATGAGTTCTTGATGATCTGATATGGGATAGGGTTTTCAAATTTGATTGATTTTCCTTTGCATCTGTGGTGTTTTTCTGATGGGATTTTGATCAGTTTTGTTTAATATGGATCTTTTCTGGGTTAATCTGTTTCTCTAAAACTTGATGTTGAACAATGGAAACTTAACCTGTTATGTAGTGTGTGTTTGATGATTGTAGGGTTTCTCTCTGTTTTTTTTTTTTTTCTTTTGTGCAAGTGTTTGGTTAAGCTTACTTGCATCGGACAGACAATATGTGCTGATTGTTGTGTTTTCCTTTTTTTTTTTCTTTTATATGAATGAGTGTCCGAGTCAGCTTACGATGCCTCGATTATTCCCACAAGACAGATGACCTAACCTTCCACCTAATCTTACCATATTTGGCTTTCAAGAAAACTAGTTTCTTTACTTCTGGAATGAAATTGACAGTGGAAGGTGATTTTGGTCCAATTCCTTGTTCTTGGCTCTTGCATCTAAACAGATCTTCACACAAGGAAGTTTCCTTTTCTAGAGGTTGCTTGTTTGTGTTCTTGTTCAATCTCATTTCCATATTAGGAGTTAAGGACCATAGAAGAAGGGATTGCTGCATACATTCATTAATGTATTAAGGTTTTGATTCTTTGTTTGTGCTTTGGTTCTGCTCTTTTTCATCTTCTACTTGTTAAGTTCTTTCTGTCAGACTGATGATTCTTTTCCACTGTTCTTCCTATCTTTGTTTACTGTATGAAACTCTTAATCCTTACTCCACCTTTGTGCATTTTCAGATCAGATATCAACAAAAAAGGATCAAACTGCTGAACCCTTTGAACGCAGAGCTGTGACTTGGATCTTCTTTGGTTCATCTGAGCTGATCCCAGTTCTTTACAATCCAACAGACTTTTTGTATCTAAAATTTTGATCAAAATGGGTATCTCCAGCCTTCCTTCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTTAATACAGCCCTATCAATATCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCGACTTCACCAGATTCCACAGAGAATGCTCCTGAATCTATAGAACTCCATCTTAACTCGAACGGAAGTTTCATCAAAGAGTTCCGTAGTCGAATTCCAGCGATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTTGAACATGACTGCTCAGTCTGTCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACTGCTTCCTGCTTCTAGTGAGCATTATGAACAACATTATGGTTTAGGAATTTCATTCCATGTACAGCAGCATAGTGTATAGATAATCTTAATAGTGCATCCGCAGACCATAGCATTTGTACCTTTCATATGCAAGAGGAGTTGAAGCGTGATGAGTGTTAATGGGTCTCAGACCCCCTTAGTTATTTCATTCTAAATATGAAGCTTTTCTGCTTTTTGCGTGTGTTTATGCAGTCTTGAGACTGGTTTGTACATTTTGAGTTAATGCAGCTACTTTCCTTTA

mRNA sequence

GGTCAGTGTGTTTTTGGCTGTGGCAGAAGAGACAGAATGTAACCATGGTTAGAGAACGTGGGTTAATCTAGTTTCCTTCAGAACCGGAGTGTAATTTGGGTCTGTCAAGAACTCAGGCTGCTGTGTATAAAATCCTTTTGTCATTACCAAACCATTCAAAAAAACCACAGAAATGAACATCTCATCCATTTCTTGAATCCTTCTTTTCTCATCTCTCTTCTTCCATGGTGTGCTTCTGAGATTTTAATCAGATATCAACAAAAAAGGATCAAACTGCTGAACCCTTTGAACGCAGAGCTGTGACTTGGATCTTCTTTGGTTCATCTGAGCTGATCCCAGTTCTTTACAATCCAACAGACTTTTTGTATCTAAAATTTTGATCAAAATGGGTATCTCCAGCCTTCCTTCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTTAATACAGCCCTATCAATATCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCGACTTCACCAGATTCCACAGAGAATGCTCCTGAATCTATAGAACTCCATCTTAACTCGAACGGAAGTTTCATCAAAGAGTTCCGTAGTCGAATTCCAGCGATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTTGAACATGACTGCTCAGTCTGTCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACTGCTTCCTGCTTCTAGTGAGCATTATGAACAACATTATGGTTTAGGAATTTCATTCCATGTACAGCAGCATAGTGTATAGATAATCTTAATAGTGCATCCGCAGACCATAGCATTTGTACCTTTCATATGCAAGAGGAGTTGAAGCGTGATGAGTGTTAATGGGTCTCAGACCCCCTTAGTTATTTCATTCTAAATATGAAGCTTTTCTGCTTTTTGCGTGTGTTTATGCAGTCTTGAGACTGGTTTGTACATTTTGAGTTAATGCAGCTACTTTCCTTTA

Coding sequence (CDS)

ATGGGTATCTCCAGCCTTCCTTCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTTAATACAGCCCTATCAATATCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCGACTTCACCAGATTCCACAGAGAATGCTCCTGAATCTATAGAACTCCATCTTAACTCGAACGGAAGTTTCATCAAAGAGTTCCGTAGTCGAATTCCAGCGATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTTGAACATGACTGCTCAGTCTGTCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACTGCTTCCTGCTTCTAG

Protein sequence

MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENAPESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF

Homology

[Close]

BLAST of Sed0014030.1 vs. NCBI nr
Match: XP_004139989.1 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742532.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742533.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN46618.1 hypothetical protein Csa_005123 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS----PTSPDSTENAP 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS    P+SPDS ENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           FHRVCLEKWLDYWNLTCPLCRTPLMPEE+TASCF
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCF 154

[Close]

BLAST of Sed0014030.1 vs. NCBI nr
Match: XP_008448128.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo] >KAA0060845.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK27107.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS-----PTSPDSTENA 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS     P+SPDS ENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           LFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCF
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCF 155

[Close]

BLAST of Sed0014030.1 vs. NCBI nr
Match: XP_022140382.1 (probable E3 ubiquitin-protein ligase XERICO [Momordica charantia] >XP_022140383.1 probable E3 ubiquitin-protein ligase XERICO [Momordica charantia])

HSP 1 Score: 288.1 bits (736), Expect = 4.3e-74
Identity = 137/151 (90.73%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT-SPDSTENAPESI 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSSPT S DS ENAPES+
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESV 60

Query: 61  ELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHR 120
           E  LN NGS+I+EFRSRIPAIL+DKVHSCKWLE DCSVCLTQFEPESEINHLSCGHLFHR
Sbjct: 61  EFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEINHLSCGHLFHR 120

Query: 121 VCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           VCLEKWLDYWNLTCPLCRTPLMPEEETASCF
Sbjct: 121 VCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151

[Close]

BLAST of Sed0014030.1 vs. NCBI nr
Match: XP_038900972.1 (probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida] >XP_038900973.1 probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS----PTSPDSTENAP 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHV+G HLSS    P+SPDS ENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVIGFHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           FHRVCLEKWLDYWNLTCPLCRTPLM EE+T SCF
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMSEEDTGSCF 154

[Close]

BLAST of Sed0014030.1 vs. NCBI nr
Match: KAG7010803.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 137/153 (89.54%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT---SPDSTENAPE 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT   SPDS ENAPE
Sbjct: 92  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSMENAPE 151

Query: 61  SIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLF 120
           SIE HLN NGS+I+EFRSRIPAILF+KVHSCK LEHDCSVCLTQF P+SEINHLSCGHLF
Sbjct: 152 SIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLF 211

Query: 121 HRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           HRVCLEKWLDYWNLTCPLCRTP MPEE+TASCF
Sbjct: 212 HRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 244

[Close]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-42
Identity = 90/158 (56.96%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLS-SPTSPD----STENA 60
           MG+SSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S +SP     S+EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIELHLNSNGSFIKEFRSRIPAILFDKVHSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +  +    S+++EFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS 149
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 10  SEGVLGVILVNTALSISIFKGIVRSILHVVGIH---LSSPTSPDSTENAPESIELHLNSN 69
           +E  L  + V T   +   + IV SI   +G+        T PD T       E     +
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPETRSPFS 67

Query: 70  GSFIKEFRSRIPAILFDKV-HSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVCLEK 129
              I+E    +P I F+++ +S + L  +C+VCL +FE E EI  L +C H+FHR CL++
Sbjct: 68  ALLIREI---LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDR 127

Query: 130 WLDYWNLTCPLCRTPLMPEE 145
           W+D+   TCPLCRTP +P+E
Sbjct: 128 WMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 94  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMP 143
           DC VCL++ +   E+  L C H+FH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-10
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 94  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE 145
           DC VCL++ +   E+  L C H+FH+ CLE WL  +N TCPLCR+ L+ ++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 39/132 (29.55%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 18  LVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENA-PESIELHLNSNGSFIKEFRSR 77
           ++ T   I  F+ +V ++   +G+    P+  D  E +  +   L L+++ +   E    
Sbjct: 16  VLKTLYVIGFFRDMVDALCPYIGL----PSFLDHNETSRSDPTRLALSTSATLANEL--- 75

Query: 78  IPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWL-DYWNLTCP 137
           IP + F  + +    E  C+VCL+ F  + +I  L  CGH+FH  CL++W+ D   +TCP
Sbjct: 76  IPVVRFSDLLTDP--EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCP 135

Query: 138 LCRTPLMPEEET 147
           +CR   +PEE++
Sbjct: 136 ICRNRFLPEEKS 138

[Close]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL
Match: A0A0A0KAU4 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS----PTSPDSTENAP 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS    P+SPDS ENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           FHRVCLEKWLDYWNLTCPLCRTPLMPEE+TASCF
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCF 154

[Close]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL
Match: A0A5D3DTM0 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2527G00040 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.5e-75
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS-----PTSPDSTENA 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS     P+SPDS ENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           LFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCF
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCF 155

[Close]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL
Match: A0A1S3BIY9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490418 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.5e-75
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS-----PTSPDSTENA 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS     P+SPDS ENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIE HLN NGS+I+EFRSRIPAILFDKV SCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           LFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCF
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCF 155

[Close]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL
Match: A0A6J1CGP1 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111011070 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 137/151 (90.73%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT-SPDSTENAPESI 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSSPT S DS ENAPES+
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESV 60

Query: 61  ELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHR 120
           E  LN NGS+I+EFRSRIPAIL+DKVHSCKWLE DCSVCLTQFEPESEINHLSCGHLFHR
Sbjct: 61  EFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEINHLSCGHLFHR 120

Query: 121 VCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           VCLEKWLDYWNLTCPLCRTPLMPEEETASCF
Sbjct: 121 VCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151

[Close]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL
Match: A0A6J1FXQ9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111448681 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 137/153 (89.54%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT---SPDSTENAPE 60
           MG+SSLP+PSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPT   SPDS ENAPE
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSMENAPE 60

Query: 61  SIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLF 120
           SIE HLN NGS+I+EFRSRIPAILF+KVHSCK LEHDCSVCLTQF P+SEINHLSCGHLF
Sbjct: 61  SIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLF 120

Query: 121 HRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 151
           HRVCLEKWLDYWNLTCPLCRTP MPEE+TASCF
Sbjct: 121 HRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 153

[Close]

BLAST of Sed0014030.1 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-43
Identity = 90/158 (56.96%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLS-SPTSPD----STENA 60
           MG+SSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S +SP     S+EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIELHLNSNGSFIKEFRSRIPAILFDKVHSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +  +    S+++EFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS 149
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of Sed0014030.1 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-43
Identity = 90/158 (56.96%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLS-SPTSPD----STENA 60
           MG+SSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S +SP     S+EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIELHLNSNGSFIKEFRSRIPAILFDKVHSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +  +    S+++EFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS 149
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of Sed0014030.1 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 1   MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENAPESIE 60
           MGIS  P+ SEGV+ ++++NT +S+S+ K +VRS++++V    +   + +  ++  +S  
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS-- 60

Query: 61  LHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEH-----DCSVCLTQFEPESEINHL-SCG 120
                      + R RI    F+ +   +   +     DC VCL  F+ E E++ L SC 
Sbjct: 61  -----------KRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCK 120

Query: 121 HLFHRVCLEKWLDYWNLTCPLCRTPL 141
           H FH  CL+KW    + TCPLCR+ L
Sbjct: 121 HYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Sed0014030.1 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 10  SEGVLGVILVNTALSISIFKGIVRSILHVVGIH---LSSPTSPDSTENAPESIELHLNSN 69
           +E  L  + V T   +   + IV SI   +G+        T PD T       E     +
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPETRSPFS 67

Query: 70  GSFIKEFRSRIPAILFDKV-HSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVCLEK 129
              I+E    +P I F+++ +S + L  +C+VCL +FE E EI  L +C H+FHR CL++
Sbjct: 68  ALLIREI---LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDR 127

Query: 130 WLDYWNLTCPLCRTPLMPEE 145
           W+D+   TCPLCRTP +P+E
Sbjct: 128 WMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Sed0014030.1 vs. TAIR 10
Match: AT3G43430.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.7e-13
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 13  VLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENAPESIELHLNSNGSFIKE 72
           ++  +L  TAL I++ + I   IL       SS +S  S+  +  S  +  +   S  ++
Sbjct: 11  IISHVLYKTALIITVLRWIFAWILRYRSRSSSSSSSQSSSSPSISSQTIKESLAVSAFRD 70

Query: 73  FRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWLDYW-- 132
              R PA + D           C+VCL   E E EI  L +C H+FHR C+++WLDY   
Sbjct: 71  AVERSPAAINDM----------CAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLDYECC 130

Query: 133 ------NLTCPLCRTPLMP 143
                 + TCPLCRTPL+P
Sbjct: 131 GGDDDNHRTCPLCRTPLLP 139

The following BLAST results are available for this feature:

BLAST of Sed0014030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139989.1	1.8e-75	90.91	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742532.1 pr...	[more]
XP_008448128.1	1.1e-74	89.68	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo] >KAA006084...	[more]
XP_022140382.1	4.3e-74	90.73	probable E3 ubiquitin-protein ligase XERICO [Momordica charantia] >XP_022140383....	[more]
XP_038900972.1	1.6e-73	88.31	probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida] >XP_038900973.1 ...	[more]
KAG7010803.1	2.1e-73	89.54	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Sed0014030.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	7.7e-42	56.96	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	1.8e-14	35.71	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZU51	7.1e-11	51.02	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	7.8e-10	47.06	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9SUS5	1.7e-09	29.55	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]

BLAST of Sed0014030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU4	8.5e-76	90.91	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 P...	[more]
A0A5D3DTM0	5.5e-75	89.68	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BIY9	5.5e-75	89.68	probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A6J1CGP1	2.1e-74	90.73	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1FXQ9	1.0e-73	89.54	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Sed0014030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	5.5e-43	56.96	RING/U-box superfamily protein	[more]
AT2G04240.2	5.5e-43	56.96	RING/U-box superfamily protein	[more]
AT1G67856.1	2.6e-16	32.88	RING/U-box superfamily protein	[more]
AT3G61460.1	1.3e-15	35.71	brassinosteroid-responsive RING-H2	[more]
AT3G43430.1	7.7e-13	33.81	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 95..136 e-value: 5.0E-6 score: 36.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 94..137 e-value: 8.7E-11 score: 42.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 95..137 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 58..142 e-value: 9.8E-17 score: 62.4
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..149
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 83..143
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014030	Sed0014030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014030.1-exon	Sed0014030.1-exon-LG01:4307429..4308285	exon
Sed0014030.1-exon	Sed0014030.1-exon-LG01:4309188..4309433	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014030.1-three_prime_utr	Sed0014030.1-three_prime_utr-LG01:4307429..4307693	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014030.1-cds	Sed0014030.1-cds-LG01:4307694..4308146	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014030.1-five_prime_utr	Sed0014030.1-five_prime_utr-LG01:4308147..4308285	five_prime_UTR
Sed0014030.1-five_prime_utr	Sed0014030.1-five_prime_utr-LG01:4309188..4309433	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014030.1	Sed0014030.1-protein	polypeptide