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Sed0008485.2 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGGGAGAAAGCTTTATTTTGAAACTTTGTTGAAGAAATCGAAACAAAATCCTTTTCCCCCCTAATCGGAGACGATGACGACCGAGACTTCTCGCTTCCTCCATCTTCTTCTCCTTCTCTGCCTCGCCTCCGCCGCCGCCGCCGCCGAAGCAGCATCCATCCGCCGCTCTGGATTTCTCTCCTTAAGAACCAGAGGAAGATGCACACCACGGTAAGTTCTCCATTTCCTTTCTCCCTCTAACATATACCATTCCAAATATTAGGTCCAAATCCGATACGCATTTACATCAGATTAGATTAGGTTCCGTTTCGGTCATCGATCCGATTGAGATCGATTCGTTTCTTCGAGGCCTTCAGGTTCTGGAGTAGTAGGACAGAAGCCTGGCCGAGAATGGCGCCGGAATCGGCGACGGTGGCGAAGATCTTCGGTTCCGGAGCTCTTGAACGGTACGGATCAGAGATGACGTTAATGGACGCCGCCGCGGCGGAAGCCGCCGAAGAGGAGGCGTTCGGCAGAGTTGTGAAGGAGGCAACGGCAGCGTTGTTGAACTCGTATGCCAGAAGAAAGGAGTTTCCATATTCAGCCTGGGAGGTGAAGACATTGTTCATCAAAGCTTTGGTGTCTAAACAGGCGGCAGCTCTTCATTCTCGCCTTTTTGCTCTCGCTAATGAGTCCTGCACTTAACGACTATTCTCACGAGACAACCGTCGCTTCTACATTTGAGTTTTTAGTATTGTCTTAGTTTCACAAGTTGATAATCTTTATCAAGGATGTTGACTCTGGTTTTAGCAAGTTCTTAATTGTCATTCTATAATTTGTTGTTGTGCCCCTTGTTGTTAGCTTTCAATCTCATTTATCTAAAACAATGATGGGAGGTACGCTCAATTGATTCGTGATTAAATTGTAATCACACTTTAGACCTATTTTTAGCATGTCTAACATCGAGAGCACATGCCACTTACCATTGAGTTATGCTCATTTGACATTTGAATAATGGTCTCTTCAAGAATAAAGATCATTTATAAACCTAAGAGGAGCGCAGTGGTTGAGCGTCTAGGCTTTGGGGATGTACTCCTCTCAAGATGTCAGGTTCGAGGTTTCTATGAAGATTAATTTTTTAGGCGACCTCATATTTTGCTTCCGGTTCTACGATATATTTTGGTGCCAGAGTCTAGGGACATGCCACTCTAAAATGGATGAGTGTATTTGAGAACTCATCCATAAGAACAAGAGGTGTGAAATAAAAAGTTTGGAAAGATACGAGCATGACTTCGAAAAAGGAATGAAAAAAGCTCTTAAGATTTCATTACTCAAACAAAATATAATATGCAATCTTAAAACTACTAGAACTCGC GCGGGAGAAAGCTTTATTTTGAAACTTTGTTGAAGAAATCGAAACAAAATCCTTTTCCCCCCTAATCGGAGACGATGACGACCGAGACTTCTCGCTTCCTCCATCTTCTTCTCCTTCTCTGCCTCGCCTCCGCCGCCGCCGCCGCCGAAGCAGCATCCATCCGCCGCTCTGGATTTCTCTCCTTAAGAACCAGAGGAAGATGCACACCACGGTTCCGTTTCGGTCATCGATCCGATTGAGATCGATTCGTTTCTTCGAGGCCTTCAGGTTCTGGAGTAGTAGGACAGAAGCCTGGCCGAGAATGGCGCCGGAATCGGCGACGGTGGCGAAGATCTTCGGTTCCGGAGCTCTTGAACGGTACGGATCAGAGATGACGTTAATGGACGCCGCCGCGGCGGAAGCCGCCGAAGAGGAGGCGTTCGGCAGAGTTGTGAAGGAGGCAACGGCAGCGTTGTTGAACTCGTATGCCAGAAGAAAGGAGTTTCCATATTCAGCCTGGGAGGTGAAGACATTGTTCATCAAAGCTTTGGTGTCTAAACAGGCGGCAGCTCTTCATTCTCGCCTTTTTGCTCTCGCTAATGAGTCCTGCACTTAACGACTATTCTCACGAGACAACCGTCGCTTCTACATTTGAGTTTTTAGTATTGTCTTAGTTTCACAAGTTGATAATCTTTATCAAGGATGTTGACTCTGGTTTTAGCAAGTTCTTAATTGTCATTCTATAATTTGTTGTTGTGCCCCTTGTTGTTAGCTTTCAATCTCATTTATCTAAAACAATGATGGGAGGTACGCTCAATTGATTCGTGATTAAATTGTAATCACACTTTAGACCTATTTTTAGCATGTCTAACATCGAGAGCACATGCCACTTACCATTGAGTTATGCTCATTTGACATTTGAATAATGGTCTCTTCAAGAATAAAGATCATTTATAAACCTAAGAGGAGCGCAGTGGTTGAGCGTCTAGGCTTTGGGGATGTACTCCTCTCAAGATGTCAGGTTCGAGGTTTCTATGAAGATTAATTTTTTAGGCGACCTCATATTTTGCTTCCGGTTCTACGATATATTTTGGTGCCAGAGTCTAGGGACATGCCACTCTAAAATGGATGAGTGTATTTGAGAACTCATCCATAAGAACAAGAGGTGTGAAATAAAAAGTTTGGAAAGATACGAGCATGACTTCGAAAAAGGAATGAAAAAAGCTCTTAAGATTTCATTACTCAAACAAAATATAATATGCAATCTTAAAACTACTAGAACTCGC ATGCACACCACGGTTCCGTTTCGGTCATCGATCCGATTGAGATCGATTCGTTTCTTCGAGGCCTTCAGGTTCTGGAGTAGTAGGACAGAAGCCTGGCCGAGAATGGCGCCGGAATCGGCGACGGTGGCGAAGATCTTCGGTTCCGGAGCTCTTGAACGGTACGGATCAGAGATGACGTTAATGGACGCCGCCGCGGCGGAAGCCGCCGAAGAGGAGGCGTTCGGCAGAGTTGTGAAGGAGGCAACGGCAGCGTTGTTGAACTCGTATGCCAGAAGAAAGGAGTTTCCATATTCAGCCTGGGAGGTGAAGACATTGTTCATCAAAGCTTTGGTGTCTAAACAGGCGGCAGCTCTTCATTCTCGCCTTTTTGCTCTCGCTAATGAGTCCTGCACTTAA MHTTVPFRSSIRLRSIRFFEAFRFWSSRTEAWPRMAPESATVAKIFGSGALERYGSEMTLMDAAAAEAAEEEAFGRVVKEATAALLNSYARRKEFPYSAWEVKTLFIKALVSKQAAALHSRLFALANESCT Homology
BLAST of Sed0008485.2 vs. NCBI nr
Match: XP_038899192.1 (uncharacterized protein LOC120086555 [Benincasa hispida]) HSP 1 Score: 171.0 bits (432), Expect = 6.7e-39 Identity = 93/112 (83.04%), Postives = 97/112 (86.61%), Query Frame = 0
BLAST of Sed0008485.2 vs. NCBI nr
Match: XP_008451248.2 (PREDICTED: uncharacterized protein LOC103492595 [Cucumis melo] >KAA0059636.1 uncharacterized protein E6C27_scaffold54G00680 [Cucumis melo var. makuwa]) HSP 1 Score: 168.3 bits (425), Expect = 4.4e-38 Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of Sed0008485.2 vs. NCBI nr
Match: TYK08167.1 (uncharacterized protein E5676_scaffold886G00560 [Cucumis melo var. makuwa]) HSP 1 Score: 167.2 bits (422), Expect = 9.7e-38 Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of Sed0008485.2 vs. NCBI nr
Match: XP_004148954.1 (uncharacterized protein LOC101220310 [Cucumis sativus] >KGN44734.1 hypothetical protein Csa_015820 [Cucumis sativus]) HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37 Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0
BLAST of Sed0008485.2 vs. NCBI nr
Match: XP_023548905.1 (uncharacterized protein LOC111807417 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 161.0 bits (406), Expect = 7.0e-36 Identity = 91/111 (81.98%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of Sed0008485.2 vs. ExPASy TrEMBL
Match: A0A5A7UZL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00680 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38 Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of Sed0008485.2 vs. ExPASy TrEMBL
Match: A0A1S3BQF6 (uncharacterized protein LOC103492595 OS=Cucumis melo OX=3656 GN=LOC103492595 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38 Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of Sed0008485.2 vs. ExPASy TrEMBL
Match: A0A5D3C871 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00560 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 4.7e-38 Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of Sed0008485.2 vs. ExPASy TrEMBL
Match: A0A0A0K735 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375760 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 6.2e-38 Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0
BLAST of Sed0008485.2 vs. ExPASy TrEMBL
Match: A0A6J1JR18 (uncharacterized protein LOC111488125 OS=Cucurbita maxima OX=3661 GN=LOC111488125 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 5.8e-36 Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = 0
BLAST of Sed0008485.2 vs. TAIR 10
Match: AT2G20515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22 Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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