Sed0008282.1 (mRNA) Chayote v1

Overview


Name	Sed0008282.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	nuclear factor Y, subunit B13
Location	LG12: 31327734 .. 31331277 (+)
Sequence length	847
RNA-Seq Expression	Sed0008282.1
Synteny	Sed0008282.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAACCACAACGACCTCTGATAAAAATGCATATATCAACAATGCCCTTCGTCCTTCGATTCCGATCTTCTTCTTCAATCGGTGGAGTCGCCGTCGTGATTTTCCGGCCACGTTGGTTTAGTTTCGCCGTTGGTTTCTGGAACGCCGTGAGTTCCGATCTCCTTCCTTTTTTTTTTTGTGCATCAGAAATCGTTTCTGTTTCTTATTGTTGCAGCTAGGGTTTTTTTTTTTTTTTTTAATCTGATTTTTTTGTGTGTGTGTGTTGTGTTTATTGCAGTCTTGAAGGTTTGGTTATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGGTATTTTTTATTTCTGGTTTTTTTTTTTTGTGAATTTCTTGGGGGTATTTTTCTCCCATGGTGCAGTGAATTGGATGTTATGATGATTCGTGGACTAATTTGACGTTCCTTCTTTTAGTTTATAACAATAATCTGAATTTGGGGATCTTGTGTAGAAGAAGTATTGAATCGTGGGTTGACGTTGGTGTCTGGATAAATTATATTTCGTGACTTGAACGATTAATAGTATCTTTAGTTATGATTTCAACTGGAGAGGATGAACCTTGGCCTTTTTTTTAATTTTTTTTTTTTTTTTAAATTTTAATTTTTATTGGAATTTTTTTGGCTCGACACTGCAGGGCGCCCAGGTGGGAAATTGAAACTATCTTATAGGCTAGAGTTCATGGAGCTGGAAAGGGCACCCTTTGCTTTATTTTCTTTTTAGTTTCAGTTTTCTTTGGGGGGGTTAAATCGAGTGACTAGTATGTCTCTTCTTAATAACCGGAGATCTCTTTTGTAAGAGGTATATTAGTATGATGTAATTTTGTAATTTCATACTATTAATGAAATTGTTTCTTATCCAAAAACATAAAGCGAGTGACTAGTATGCCGTAGGGCTAAATCTGGATGTCTGAGTTTTACTTCATCAGTCCTCCCTAGGACATGTTCACGCATAGATAGATTTGAAGAACGAAGTCTTTCATAAGAATTTAGTAGCTTTTATGGACTGTTTTGTCACCTTAATGTTAGAGTTTTTCTACTCATGTCCTGTCTTTTAATCATGTTTTTGCTTGCATCCCACAGAATATACAGTCACTGACTCACTGAGTGATCAAACAACAGATGTTTTTTTTGTTTAGTATTTATGTAAGATGGCAGAGTTTCTCAGTCGGATTATCTTTTGTTCTGCAATTTCATCTTACTTTGAGGCTCTTCCCCTTCCTCATATTCTGCTTCCTTTAAGTCTATTTTGTCTTGTGGTTCTCGTTCAGCTTTCTTGATTGGCGTTTTTCTTAAGAAAGAGTATCTTTTGTGGACGCTTTTGTACCCTAAGTGTTATAGTTCCTCTACTCCGGTGTTCTTTTTCTTTCAGTTCTTTTAGCCTACAAAAATTGGTTCGAACTTTCATAGATGTATTTTGTTGACTATTATATGGCTTCCTTGCTTGTACAAACCAAATAATACTTAGACCACTTAATTTCTTGGTTCGAACTTTCATTTTTTTAGCTCACACAAGTTTATTGTATTTATAATTTATATTATTACTATTTTAACATGGGAGAATCAAACCTCTAACCTCTAGCAGGGGTTATAATGTTTTCATCAATTTAGTTATGCTCCGAGCAACAAGTGCTTTTTTGTTTTCTAAACCATAATTTCTGAATTTACATGTAGTTTGTTTTAGTTAATTTTTTTGTTAACTTTTTTTCTTTTTCAGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGGTGAGAATATCTTGCTTTGCCATTTTCTTTGTATATTTTACATTTAGTCTGTTAGTACTTGGTGCTTGTTTCATTCACTCCTGTTAATGGACGTTTATAGTTTTTATTTTTCCAACAACAATGACCGGTAGTTGTCTTTGGACACTGCCTCTGTTGTACTATTTATTATTTAGTGGATTTTTTTATTGCTTCTCACTTAAAAATTGAACTCTCTTTATTTTGGTGTCTGGCAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTATATGAACTATCCAAGTTTACTTCATATTCTCTTTAACATAGACTCATATGTGTTACTAGTTTCTATCTTTTTAGTAATGTATGCTGCCTTTTTTTTACCACCCAAACCCAATTCAGATTTTCCAATCTGTAGGAGTTTATTTCACAGCTCCTTTATACAGTTATACACATACAGTACAAAATCTCAAAATAAATGAATGGTCGTCAGTGGAAGTAGGACTTCAATTCCCTATCTATACCTTGCCTAAAAAGTATTAGGAATTTTGATCATGTTATCAATTAATTTTAAATGTCTTTTTTAATCATTGCCCATATCGTTCATTCTAAATCTACAAATACTTTTAGCCTATAGTTTATTTTGGATGTACTCTGCTGCCCTCTTAAATAGTTGGACCTTTGGATCAAGCATTAAGGAGTTCTTGCAGAAAATCGTACTCTCCTGCTCTTGCATAGAAATGGAGGAGAGACAAATCACAATATATGTGAACAATGTCATGTAGAGTTTATTGCTCATTAGAACTGAAATCCCTCTTTTTTCAGATGGAGTAGCATCTGTGGATTGTGTTCATAACTTTTTCATTCTCGTGTTTGAAGAAGAGTGATTTGCATCTTTTGCTTGGTTACTTCTATTTTATGTCTGCTCTTGGACTGACACGTAAGATTATATGTATGAGCAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGGTAATGCTTTATAATAGAAAATTTCTGTTGGGTCTAGATAAAAAGAAACAGTCTAGACTTTAAATAATCTGTATCTATTTTTAATTTGTGTTCCTTAGAGAAAATTCTTGTCCATGATTCTCATAGTCATAACTAGGATATATGCTCATAAATTTTGTATCGACTTAAATATTAGTGTCTCTAGATAACTAGAAGCACTGACATTTTTCTTTTCTCTCTATCGAGAAAATTTACCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAATTTTAGGATATTTATTTTCTTCAACTGTAGGCAAGATTCCTTGACCCTTCCATTTGTGCCTCAAATATGCCTTGTTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATCTGCGTATCCATTTCTAGTTAAATACAAGTAGTGACTGTTTAAAATTCTCTCTTTCTCTCCAA

mRNA sequence

GAAGAACCACAACGACCTCTGATAAAAATGCATATATCAACAATGCCCTTCGTCCTTCGATTCCGATCTTCTTCTTCAATCGGTGGAGTCGCCGTCGTGATTTTCCGGCCACGTTGGTTTAGTTTCGCCGTTGGTTTCTGGAACGCCTCTTGAAGGTTTGGTTATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAATTTTAGGATATTTATTTTCTTCAACTGTAGGCAAGATTCCTTGACCCTTCCATTTGTGCCTCAAATATGCCTTGTTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATCTGCGTATCCATTTCTAGTTAAATACAAGTAGTGACTGTTTAAAATTCTCTCTTTCTCTCCAA

Coding sequence (CDS)

ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAA

Protein sequence

MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES

Homology

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BLAST of Sed0008282.1 vs. NCBI nr
Match: XP_038879127.1 (protein Dr1 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

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BLAST of Sed0008282.1 vs. NCBI nr
Match: XP_008453352.1 (PREDICTED: protein Dr1 homolog [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR+ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. NCBI nr
Match: XP_022134979.1 (protein Dr1 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNG+NTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGNNTAPKQPEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. NCBI nr
Match: XP_022929369.1 (protein Dr1 homolog isoform X2 [Cucurbita moschata] >XP_023000856.1 protein Dr1 homolog isoform X2 [Cucurbita maxima] >XP_023530793.1 protein Dr1 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. NCBI nr
Match: XP_022921864.1 (protein Dr1 homolog isoform X2 [Cucurbita moschata] >XP_022987316.1 protein Dr1 homolog isoform X2 [Cucurbita maxima] >XP_023516547.1 protein Dr1 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.7 bits (761), Expect = 5.7e-77
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

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BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot
Match: P49592 (Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-65
Identity = 128/156 (82.05%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

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BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot
Match: Q55DJ5 (Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.1e-30
Identity = 67/142 (47.18%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTI 70
           +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C +E KRTI
Sbjct: 8   EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTI 67

Query: 71  APEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRM 130
           A EHV+KAL  LGFS+Y ++V   Y++H+LE    S    K+ N  + T E+ + EQQ +
Sbjct: 68  AAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPT-EQLIREQQLL 127

Query: 131 FAEARARMNGSNTAPKQPEPEQ 153
           FA+AR+    S  A +  + +Q
Sbjct: 128 FAKARSAFQASPEAQQLQQLQQ 148

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BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot
Match: O14348 (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ncb2 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-26
Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 8   GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDK 67
           G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C KE K
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63

Query: 68  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQ 127
           +TIA EH++KALE L F EYI E      +H+ +      K  K+     ++ +E L +Q
Sbjct: 64  KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQ 123

Query: 128 QRMFAEARARMNGSNTA 145
           + + + AR R    N A
Sbjct: 124 EELLSRARERFKNQNIA 139

[Close]

BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot
Match: B0Y0F3 (NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=nctB PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-25
Identity = 65/134 (48.51%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 10  SKEDASLPKATMTKIIKEMLPPD--VRVARDAQDLLIECCVEFINLVSSESNEVCSKEDK 69
           S +D SLPKAT+ KII E+LPP      ++DA+DLL+ECCVEFI L+SSE+N++  KE K
Sbjct: 8   SNDDLSLPKATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAK 67

Query: 70  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQ 129
           +TIA EHV +AL  LGF +YI EV A  E+H+ +      K  K      +TEEE L +Q
Sbjct: 68  KTIACEHVERALRDLGFGDYIPEVLAVAEEHKEQLKSREKKQSKMEQSG-LTEEELLRQQ 127

Query: 130 QRMFAEARARMNGS 142
           Q +F  A  + N +
Sbjct: 128 QELFRSATEKYNAA 140

[Close]

BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot
Match: Q4WFF8 (NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=nctB PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-25
Identity = 65/134 (48.51%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 10  SKEDASLPKATMTKIIKEMLPPD--VRVARDAQDLLIECCVEFINLVSSESNEVCSKEDK 69
           S +D SLPKAT+ KII E+LPP      ++DA+DLL+ECCVEFI L+SSE+N++  KE K
Sbjct: 8   SNDDLSLPKATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAK 67

Query: 70  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQ 129
           +TIA EHV +AL  LGF +YI EV A  E+H+ +      K  K      +TEEE L +Q
Sbjct: 68  KTIACEHVERALRDLGFGDYIPEVLAVAEEHKEQLKSREKKQSKMEQSG-LTEEELLRQQ 127

Query: 130 QRMFAEARARMNGS 142
           Q +F  A  + N +
Sbjct: 128 QELFRSATEKYNAA 140

[Close]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL
Match: A0A1S3BW28 (protein Dr1 homolog OS=Cucumis melo OX=3656 GN=LOC103494097 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.2e-78
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR+ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL
Match: A0A6J1C081 (protein Dr1 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007097 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.5e-78
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNG+NTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGNNTAPKQPEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL
Match: A0A6J1KGZ7 (protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495169 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL
Match: A0A6J1ENJ5 (protein Dr1 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435956 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL
Match: A0A6J1JDU1 (protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VCSKE+KRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]

BLAST of Sed0008282.1 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-66
Identity = 128/156 (82.05%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of Sed0008282.1 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-66
Identity = 128/156 (82.05%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of Sed0008282.1 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-65
Identity = 128/149 (85.91%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EY+EEVYAAYEQH+ ETMQDS +  K ++GAEMTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPE 150
           EEA AEQQRMFAEARARMNG  T P QPE
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVTVP-QPE 148

[Close]

BLAST of Sed0008282.1 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 127/156 (81.41%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH+ ETM D+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETM-DTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 155

[Close]

BLAST of Sed0008282.1 vs. TAIR 10
Match: AT5G08190.2 (nuclear factor Y, subunit B12 )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 127/149 (85.23%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTE 120
           VC+KEDKRTIAPEHVLKAL+VLGF EY+EEVYAAYEQH+ ETM DS +  K ++GAEMTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETM-DSQRSVKMNSGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQPE 150
           EEA AEQQRMFAEARARMNG  T P QPE
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVTVP-QPE 147

The following BLAST results are available for this feature:

BLAST of Sed0008282.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879127.1	8.8e-78	99.36	protein Dr1 homolog isoform X2 [Benincasa hispida]	[more]
XP_008453352.1	1.5e-77	98.72	PREDICTED: protein Dr1 homolog [Cucumis melo]	[more]
XP_022134979.1	2.0e-77	98.72	protein Dr1 homolog isoform X2 [Momordica charantia]	[more]
XP_022929369.1	4.4e-77	99.36	protein Dr1 homolog isoform X2 [Cucurbita moschata] >XP_023000856.1 protein Dr1 ...	[more]
XP_022921864.1	5.7e-77	98.72	protein Dr1 homolog isoform X2 [Cucurbita moschata] >XP_022987316.1 protein Dr1 ...	[more]

BLAST of Sed0008282.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49592	1.8e-65	82.05	Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1	[more]
Q55DJ5	7.1e-30	47.18	Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1	[more]
O14348	6.2e-26	43.80	Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 97...	[more]
B0Y0F3	2.4e-25	48.51	NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain...	[more]
Q4WFF8	2.4e-25	48.51	NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain...	[more]

BLAST of Sed0008282.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW28	7.2e-78	98.72	protein Dr1 homolog OS=Cucumis melo OX=3656 GN=LOC103494097 PE=4 SV=1	[more]
A0A6J1C081	9.5e-78	98.72	protein Dr1 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007097 PE...	[more]
A0A6J1KGZ7	2.1e-77	99.36	protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495169 PE=4 ...	[more]
A0A6J1ENJ5	2.1e-77	99.36	protein Dr1 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435956 PE=...	[more]
A0A6J1JDU1	2.8e-77	98.72	protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 ...	[more]

BLAST of Sed0008282.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23090.2	1.3e-66	82.05	nuclear factor Y, subunit B13	[more]
AT5G23090.1	1.3e-66	82.05	nuclear factor Y, subunit B13	[more]
AT5G08190.1	1.8e-65	85.91	nuclear factor Y, subunit B12	[more]
AT5G23090.4	1.2e-64	81.41	nuclear factor Y, subunit B13	[more]
AT5G08190.2	1.3e-63	85.23	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 14..79 e-value: 2.9E-22 score: 78.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..145 e-value: 1.4E-41 score: 143.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..156
IPR044255	Protein Dr1 homolog	PANTHER	PTHR47173	PROTEIN DR1 HOMOLOG	coord: 1..155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0008282	Sed0008282	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008282.1-five_prime_utr	Sed0008282.1-five_prime_utr-LG12:31327734..31327880	five_prime_UTR
Sed0008282.1-five_prime_utr	Sed0008282.1-five_prime_utr-LG12:31328012..31328027	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31327734..31327880	exon
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31328012..31328082	exon
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31329500..31329589	exon
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31329823..31329917	exon
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31330597..31330665	exon
Sed0008282.1-exon	Sed0008282.1-exon-LG12:31330903..31331277	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008282.1-cds	Sed0008282.1-cds-LG12:31328028..31328082	CDS
Sed0008282.1-cds	Sed0008282.1-cds-LG12:31329500..31329589	CDS
Sed0008282.1-cds	Sed0008282.1-cds-LG12:31329823..31329917	CDS
Sed0008282.1-cds	Sed0008282.1-cds-LG12:31330597..31330665	CDS
Sed0008282.1-cds	Sed0008282.1-cds-LG12:31330903..31331064	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008282.1-three_prime_utr	Sed0008282.1-three_prime_utr-LG12:31331065..31331277	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0008282.1	Sed0008282.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity