Sed0007136.1 (mRNA) Chayote v1

Overview


Name	Sed0007136.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	leucine-rich repeat extensin-like protein 3 isoform X2
Location	LG01: 10388837 .. 10390059 (-)
Sequence length	1006
RNA-Seq Expression	Sed0007136.1
Synteny	Sed0007136.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACACTAGATTAAATTCTAATTATTATTGTAAGATAAAAGTATATATAGTTTAGTTAATCATACAAACCAGAAATTGGCAATTGTATATCCAAAATGTTATTTGTATATATAAGGGAAATTGTAATGCTGTTTACGTGTTTGTATATGAATGATCCTTGTAACTACAATCGCCATTTGCACACCTTTTTCTGTGCCCCTCTGATTCAGATGCCATTTGGGTCTATTTCATTGCCCTTCTCTTTCTCTGCTTTCTTCCACAGCCCACGTTTCTTCCCAATCATCCATGGCGGACGCCAAGGTCTCAATCCTCCCTCCTCTGATCTTCTCTCTTTTTTTCCTTTCATTTTTTGGGTTTAATTTCTTGTCTCCGTTCTTGCTCAGCTTAATTCTAAATTTGGGTTTGAAATTTTGATGCAGGTTGTGGTCATGGTTCTTAAGGTAGACCTCCACTGCGATCGCTGCTACAAGAAAGTCAAGAAAGTTCTCTGCAAATTCCATCGTCAGTTTCTTCTTCTTAATTCCCCTTTCTCTGTTTTTTTTTTTTTTTTTTTGATTAATTTTGCCCAACTGAGACTCTGTTTTTCGTTTGAGCATCAGAAATTCGAGACCAGATGTATGATGAGAAACAGAATCTTGTGATCATCAAAGTGGTTTGCTGTAATCCTGAGAGGCTTAGAGATAAAATTTGCTGTAAGGGTTGTGGGGTTATCAAGAGTATTGAAATCAAGCCCGCCGATCCTCCTCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCAGACCCTCCACCGCCGGTAAAAAAACCCGACCCTCCACCGCCGGTGGTCGTCCCGAATCCCCCTCCGGTTCAGCCGGTGGCGGTGAATATATGCGTTCCGGTTCACGGGTACCCGCCGGCATACCCGATGGGCCTGTGTTGCAGGCAGTGCTACCGAGGGCAGGGCGGGGGCCCATGTTTGAGCGAGTATGGGCGACCCGACCCATGTTGCGATGGGTGTGCTTCTGGAAGGCCCATTTACGATAGCTACGGCGGAGGGGGAGCCTGTTACGTTGCCCACTGTCAATATCTGAATGAAGAAAATGCGTCCGGGTGCAGTGTTATGTGA

mRNA sequence

TGGACACTAGATTAAATTCTAATTATTATTGTAAGATAAAAGTATATATAGTTTAGTTAATCATACAAACCAGAAATTGGCAATTGTATATCCAAAATGTTATTTGTATATATAAGGGAAATTGTAATGCTGTTTACGTGTTTGTATATGAATGATCCTTGTAACTACAATCGCCATTTGCACACCTTTTTCTGTGCCCCTCTGATTCAGATGCCATTTGGGTCTATTTCATTGCCCTTCTCTTTCTCTGCTTTCTTCCACAGCCCACGTTTCTTCCCAATCATCCATGGCGGACGCCAAGGTTGTGGTCATGGTTCTTAAGGTAGACCTCCACTGCGATCGCTGCTACAAGAAAGTCAAGAAAGTTCTCTGCAAATTCCATCAAATTCGAGACCAGATGTATGATGAGAAACAGAATCTTGTGATCATCAAAGTGGTTTGCTGTAATCCTGAGAGGCTTAGAGATAAAATTTGCTGTAAGGGTTGTGGGGTTATCAAGAGTATTGAAATCAAGCCCGCCGATCCTCCTCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCAGACCCTCCACCGCCGGTAAAAAAACCCGACCCTCCACCGCCGGTGGTCGTCCCGAATCCCCCTCCGGTTCAGCCGGTGGCGGTGAATATATGCGTTCCGGTTCACGGGTACCCGCCGGCATACCCGATGGGCCTGTGTTGCAGGCAGTGCTACCGAGGGCAGGGCGGGGGCCCATGTTTGAGCGAGTATGGGCGACCCGACCCATGTTGCGATGGGTGTGCTTCTGGAAGGCCCATTTACGATAGCTACGGCGGAGGGGGAGCCTGTTACGTTGCCCACTGTCAATATCTGAATGAAGAAAATGCGTCCGGGTGCAGTGTTATGTGA

Coding sequence (CDS)

ATGGCGGACGCCAAGGTTGTGGTCATGGTTCTTAAGGTAGACCTCCACTGCGATCGCTGCTACAAGAAAGTCAAGAAAGTTCTCTGCAAATTCCATCAAATTCGAGACCAGATGTATGATGAGAAACAGAATCTTGTGATCATCAAAGTGGTTTGCTGTAATCCTGAGAGGCTTAGAGATAAAATTTGCTGTAAGGGTTGTGGGGTTATCAAGAGTATTGAAATCAAGCCCGCCGATCCTCCTCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCCGACCCTCCACCGCCGGTCAAAAAACCAGACCCTCCACCGCCGGTAAAAAAACCCGACCCTCCACCGCCGGTGGTCGTCCCGAATCCCCCTCCGGTTCAGCCGGTGGCGGTGAATATATGCGTTCCGGTTCACGGGTACCCGCCGGCATACCCGATGGGCCTGTGTTGCAGGCAGTGCTACCGAGGGCAGGGCGGGGGCCCATGTTTGAGCGAGTATGGGCGACCCGACCCATGTTGCGATGGGTGTGCTTCTGGAAGGCCCATTTACGATAGCTACGGCGGAGGGGGAGCCTGTTACGTTGCCCACTGTCAATATCTGAATGAAGAAAATGCGTCCGGGTGCAGTGTTATGTGA

Protein sequence

MADAKVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLRDKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVVVPNPPPVQPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCASGRPIYDSYGGGGACYVAHCQYLNEENASGCSVM

Homology

[Close]

BLAST of Sed0007136.1 vs. NCBI nr
Match: XP_023520688.1 (leucine-rich repeat extensin-like protein 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 199/282 (70.57%), Postives = 208/282 (73.76%), Query Frame = 0


Query: 1   MADAKVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLRD 60
           MADAK VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LRD
Sbjct: 1   MADAKTVVMLLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRD 60

Query: 61  KICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDPPPPVKKP 120
           KICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DPPPP   P
Sbjct: 61  KICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKADP 120

Query: 121 DPP-----PPVKKPDPPPPVKKPDP------PPPVKKPDPPPPVVVPNPP---------- 180
            PP     PP KK DPPPP KK DP      PPP KK DPPPP   P PP          
Sbjct: 121 PPPKKADLPPPKKADPPPP-KKADPPPPKADPPPPKKADPPPPKAEPPPPKKADPPPAPK 180

Query: 181 ----------PV-----QPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRP 240
                     PV     +P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP
Sbjct: 181 ADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRP 240

[Close]

BLAST of Sed0007136.1 vs. NCBI nr
Match: XP_022927598.1 (leucine-rich repeat extensin-like protein 3 isoform X12 [Cucurbita moschata])

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-84
Identity = 197/266 (74.06%), Postives = 205/266 (77.07%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDPPPPVKKPDP-----PPPVKKPDPPPPVVVPNPPPVQ 180
           PPP KK DP      PPP KK DPPPP   P P     PPP  K DPPPP  V   PP Q
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQ 180

Query: 181 --PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCASGRPIYDS 240
             P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCASGRPIYDS
Sbjct: 181 PEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDS 240

[Close]

BLAST of Sed0007136.1 vs. NCBI nr
Match: XP_022973160.1 (leucine-rich repeat extensin-like protein 3 isoform X4 [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-84
Identity = 197/273 (72.16%), Postives = 207/273 (75.82%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA KVVVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK------KPDPPPPVKKPDPPPPVKKP 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K      KPDPPPP KK DPPPP   P
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPAKPDPPPP-KKADPPPPKADP 120

Query: 121 DPP-----PPVKKPDP------PPPVKKPDP------PPPVKKPDPPPPVVVPNPPP--- 180
            PP     PP KK DP      PPP KK DP      PPP KK DPPPP     PPP   
Sbjct: 121 PPPKKADAPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPAKADPPPPKKV 180

Query: 181 -------VQPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCAS 240
                   +P  VN+CVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCAS
Sbjct: 181 DPLPPAQPEPFPVNMCVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCAS 240

[Close]

BLAST of Sed0007136.1 vs. NCBI nr
Match: XP_022927597.1 (leucine-rich repeat extensin-like protein 3 isoform X11 [Cucurbita moschata])

HSP 1 Score: 320.9 bits (821), Expect = 9.6e-84
Identity = 200/274 (72.99%), Postives = 208/274 (75.91%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDP------PPPVKKPDPPPPVK-------KPDPPPPVV 180
           PPP KK DP      PPP KK DP      PPP KK DPPPP K       K DPPPP  
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPAPKADPPPPKK 180

Query: 181 VPNPPPVQ--PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCA 240
           V   PP Q  P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCA
Sbjct: 181 VDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCA 240

[Close]

BLAST of Sed0007136.1 vs. NCBI nr
Match: XP_022927595.1 (protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 [Cucurbita moschata])

HSP 1 Score: 320.5 bits (820), Expect = 1.3e-83
Identity = 200/275 (72.73%), Postives = 208/275 (75.64%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDP-------PPPVKKPDPPPPVK-------KPDPPPPV 180
           PPP KK DP      PPP KK DP       PPP KK DPPPP K       K DPPPP 
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKKADPPPPKKADPPPAPKADPPPPK 180

Query: 181 VVPNPPPVQ--PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGC 240
            V   PP Q  P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGC
Sbjct: 181 KVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGC 240

[Close]

BLAST of Sed0007136.1 vs. ExPASy TrEMBL
Match: A0A6J1IAN1 (leucine-rich repeat extensin-like protein 3 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111471668 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.6e-84
Identity = 197/273 (72.16%), Postives = 207/273 (75.82%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA KVVVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK------KPDPPPPVKKPDPPPPVKKP 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K      KPDPPPP KK DPPPP   P
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPAKPDPPPP-KKADPPPPKADP 120

Query: 121 DPP-----PPVKKPDP------PPPVKKPDP------PPPVKKPDPPPPVVVPNPPP--- 180
            PP     PP KK DP      PPP KK DP      PPP KK DPPPP     PPP   
Sbjct: 121 PPPKKADAPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPAKADPPPPKKV 180

Query: 181 -------VQPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCAS 240
                   +P  VN+CVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCAS
Sbjct: 181 DPLPPAQPEPFPVNMCVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCAS 240

[Close]

BLAST of Sed0007136.1 vs. ExPASy TrEMBL
Match: A0A6J1ELG0 (leucine-rich repeat extensin-like protein 3 isoform X12 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.6e-84
Identity = 197/266 (74.06%), Postives = 205/266 (77.07%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDPPPPVKKPDP-----PPPVKKPDPPPPVVVPNPPPVQ 180
           PPP KK DP      PPP KK DPPPP   P P     PPP  K DPPPP  V   PP Q
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQ 180

Query: 181 --PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCASGRPIYDS 240
             P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCASGRPIYDS
Sbjct: 181 PEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDS 240

[Close]

BLAST of Sed0007136.1 vs. ExPASy TrEMBL
Match: A0A6J1EHM2 (leucine-rich repeat extensin-like protein 3 isoform X11 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.6e-84
Identity = 200/274 (72.99%), Postives = 208/274 (75.91%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDP------PPPVKKPDPPPPVK-------KPDPPPPVV 180
           PPP KK DP      PPP KK DP      PPP KK DPPPP K       K DPPPP  
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPAPKADPPPPKK 180

Query: 181 VPNPPPVQ--PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCA 240
           V   PP Q  P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGCA
Sbjct: 181 VDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCA 240

[Close]

BLAST of Sed0007136.1 vs. ExPASy TrEMBL
Match: A0A6J1EPF0 (protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 6.1e-84
Identity = 200/275 (72.73%), Postives = 208/275 (75.64%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA K VVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK-------KPDPPPPVKKPDP------ 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K       KPDPPPP KK DP      
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPP-KKADPPPPKAD 120

Query: 121 PPPVKKPDP------PPPVKKPDP-------PPPVKKPDPPPPVK-------KPDPPPPV 180
           PPP KK DP      PPP KK DP       PPP KK DPPPP K       K DPPPP 
Sbjct: 121 PPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKKADPPPPKKADPPPAPKADPPPPK 180

Query: 181 VVPNPPPVQ--PVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCCDGC 240
            V   PP Q  P  VNICVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP PCCDGC
Sbjct: 181 KVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGC 240

[Close]

BLAST of Sed0007136.1 vs. ExPASy TrEMBL
Match: A0A6J1IDR1 (leucine-rich repeat extensin-like protein 3 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471668 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.0e-83
Identity = 197/280 (70.36%), Postives = 207/280 (73.93%), Query Frame = 0


Query: 1   MADA-KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLR 60
           MADA KVVVM+LKVDL CDRCYKKVKKVLCKF QIRDQ+YDEKQNLVIIKVVCCNPE+LR
Sbjct: 1   MADAKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPVKKPDPPPPVK------KPDPPPPVK------KPDPP 120
           DKICCKGCGVIKSIEIKPADPPP KKPDPPPP K      KPDPPPP K      K DPP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPAKPDPPPPKKADPPPPKADPP 120

Query: 121 -------PPVKKPDP------PPPVKKPDPPPPVKKPDP-----PPPVKKPDPPPPVVVP 180
                  PP KK DP      PPP KK DPPPP   P P     PPP KK DPPPP    
Sbjct: 121 PPKKADAPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPAKAD 180

Query: 181 NPPP----------VQPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDP 240
            PPP           +P  VN+CVPV GYPPAYP+G+CC QCY GQGGGPC S +GRP P
Sbjct: 181 PPPPKKVDPLPPAQPEPFPVNMCVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGP 240

[Close]

BLAST of Sed0007136.1 vs. TAIR 10
Match: AT4G16380.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 114/254 (44.88%), Postives = 142/254 (55.91%), Query Frame = 0


Query: 5   KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLRDKICC 64
           KV +M LKVDL C +CYKKVKKVLCKF QIRDQ++DEK N+VIIKVVCC+PER+ DK+C 
Sbjct: 8   KVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLCS 67

Query: 65  KGCGVIKSIEIKPADPPPVKKPDPPP------PVKKPDPPPPVKKPDPPPPVKKPDPPPP 124
           KG G IK+IEI     PP  +P  PP        K P+ P   +KP  P  +K+P+ P  
Sbjct: 68  KGGGSIKTIEIVEPPKPPQPQPQQPPQKPKDAQPKAPEKPKEPEKPKQPEKLKEPEKPKQ 127

Query: 125 VKKPDPPPPVKKPDP-----PPPVKKPDPPPPVVVPNPPPVQPVAVNICVPVHGYPPAYP 184
            +KP  P   K+P P     P P  KP  P P   P P P QP      +P+   P   P
Sbjct: 128 PEKPKEPEKTKQPAPAPAPAPAPAAKP-APAPAPAPAPAPKQPGPPPQAIPM--MPQGQP 187

Query: 185 MGLCCRQCYRGQGGGPCLSEYGRPDPCCDGCASGRPIYDSYGGG--------GACYVAHC 240
             +CC   Y G  GGP  + YG P    +    GRP+Y+S+GGG          C+V  C
Sbjct: 188 -AMCCGPYYDGY-GGPAFNGYGMPPQPYE--CYGRPVYESWGGGCPPPPPAYRQCHVTRC 247

[Close]

BLAST of Sed0007136.1 vs. TAIR 10
Match: AT4G16380.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-16
Identity = 92/226 (40.71%), Postives = 119/226 (52.65%), Query Frame = 0


Query: 33  QIRDQMYDEKQNLVIIKVVCCNPERLRDKICCKGCGVIKSIEIKPADPPPVKKPDPPP-- 92
           +IRDQ++DEK N+VIIKVVCC+PER+ DK+C KG G IK+IEI     PP  +P  PP  
Sbjct: 15  EIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGGSIKTIEIVEPPKPPQPQPQQPPQK 74

Query: 93  ----PVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDP-----PPPVKKPD 152
                 K P+ P   +KP  P  +K+P+ P   +KP  P   K+P P     P P  KP 
Sbjct: 75  PKDAQPKAPEKPKEPEKPKQPEKLKEPEKPKQPEKPKEPEKTKQPAPAPAPAPAPAAKP- 134

Query: 153 PPPPVVVPNPPPVQPVAVNICVPVHGYPPAYPMGLCCRQCYRGQGGGPCLSEYGRPDPCC 212
            P P   P P P QP      +P+   P   P  +CC   Y G  GGP  + YG P    
Sbjct: 135 APAPAPAPAPAPKQPGPPPQAIPM--MPQGQP-AMCCGPYYDGY-GGPAFNGYGMPPQPY 194

Query: 213 DGCASGRPIYDSYGGG--------GACYVAHCQYLNEENASGCSVM 240
           +    GRP+Y+S+GGG          C+V  C Y +EEN   CS+M
Sbjct: 195 E--CYGRPVYESWGGGCPPPPPAYRQCHVTRCDYFSEENPQSCSIM 233

[Close]

BLAST of Sed0007136.1 vs. TAIR 10
Match: AT1G51090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 5   KVVVMVLKVDLHCDRCYKKVKKVLCKFHQIRDQMYDEKQNLVIIKVVCCNPERLRDKICC 64
           KVV+M LKVDL+C +CYKKVKK + KF QI D+++DEK N +IIKVVC +PERL +K+C 
Sbjct: 4   KVVMMKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKLCY 63

Query: 65  KGCGVIKSIEIKPADPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDPPPPVKKPDP 124
           KG G IKSI I   +PP   +P P PP +KP  P P       P + +P P P +     
Sbjct: 64  KGDGSIKSIVI--LEPPKPPQPQPQPP-QKPTAPAPAPAQAQAPALVRPAPVPVLVSSSA 123

Query: 125 PPPVKKPDP 134
           P P+    P
Sbjct: 124 PQPMPMWQP 129

The following BLAST results are available for this feature:

BLAST of Sed0007136.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520688.1	1.5e-84	70.57	leucine-rich repeat extensin-like protein 3 isoform X2 [Cucurbita pepo subsp. pe...	[more]
XP_022927598.1	3.3e-84	74.06	leucine-rich repeat extensin-like protein 3 isoform X12 [Cucurbita moschata]	[more]
XP_022973160.1	3.3e-84	72.16	leucine-rich repeat extensin-like protein 3 isoform X4 [Cucurbita maxima]	[more]
XP_022927597.1	9.6e-84	72.99	leucine-rich repeat extensin-like protein 3 isoform X11 [Cucurbita moschata]	[more]
XP_022927595.1	1.3e-83	72.73	protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 [Cucurbita moschata]	[more]

BLAST of Sed0007136.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007136.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAN1	1.6e-84	72.16	leucine-rich repeat extensin-like protein 3 isoform X4 OS=Cucurbita maxima OX=36...	[more]
A0A6J1ELG0	1.6e-84	74.06	leucine-rich repeat extensin-like protein 3 isoform X12 OS=Cucurbita moschata OX...	[more]
A0A6J1EHM2	4.6e-84	72.99	leucine-rich repeat extensin-like protein 3 isoform X11 OS=Cucurbita moschata OX...	[more]
A0A6J1EPF0	6.1e-84	72.73	protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 OS=Cucurbita moschata ...	[more]
A0A6J1IDR1	1.0e-83	70.36	leucine-rich repeat extensin-like protein 3 isoform X3 OS=Cucurbita maxima OX=36...	[more]

BLAST of Sed0007136.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16380.1	1.2e-28	44.88	Heavy metal transport/detoxification superfamily protein	[more]
AT4G16380.2	1.4e-16	40.71	Heavy metal transport/detoxification superfamily protein	[more]
AT1G51090.1	6.8e-11	48.84	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 77..98 score: 47.27 coord: 102..118 score: 45.88 coord: 123..140 score: 50.0
None	No IPR available	GENE3D	3.30.70.100		coord: 3..70 e-value: 7.1E-5 score: 25.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..149
None	No IPR available	PANTHER	PTHR47488:SF16	HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN	coord: 4..239
IPR044169	Protein PYRICULARIA ORYZAE RESISTANCE 21	PANTHER	PTHR47488	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 4..239
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 8..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007136	Sed0007136	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007136.1-exon	Sed0007136.1-exon-LG01:10388837..10389459	exon
Sed0007136.1-exon	Sed0007136.1-exon-LG01:10389558..10389639	exon
Sed0007136.1-exon	Sed0007136.1-exon-LG01:10389759..10390059	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007136.1-cds	Sed0007136.1-cds-LG01:10388837..10389459	CDS
Sed0007136.1-cds	Sed0007136.1-cds-LG01:10389558..10389639	CDS
Sed0007136.1-cds	Sed0007136.1-cds-LG01:10389759..10389773	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007136.1-five_prime_utr	Sed0007136.1-five_prime_utr-LG01:10389774..10390059	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007136.1	Sed0007136.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900150	regulation of defense response to fungus
molecular_function	GO:0046872	metal ion binding