Sed0006837.1 (mRNA) Chayote v1

Overview


Name	Sed0006837.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B-3
Location	LG01: 4274438 .. 4276281 (+)
Sequence length	1844
RNA-Seq Expression	Sed0006837.1
Synteny	Sed0006837.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACAGAGATTAATTTAGTATAAACTCCAATTATAAAATAAATGAAAAACTATATAAACCATAAACACTGAATTAAAATGATGGCCAGTGGCCCAGTGATGCCGAATTGGCCGTCCAAGATATTTTTAAAATCGACCAAATTAAAAAATAACAAATCATTACTCGCCACGTGTCGGGATTTATACCGCTAGATCATCACCGTATCCAACACTCCAGAAACATCCACGAAGCTTACTCTTATCGACAAATAAACGGTGAGAAACGAAACACGTGTCGCTCCCGATTGCATTATTAGCCGAAACGACGCAACGGACTCTCAACATCTCCCCTTCCCCAGCTCCCTCCACCAGTTTTCTCCGGCGGCGACTTTCCGCTTCCGGCCATCCGCTTCCGGCAACGGCGAAAACTCCGACCAGTCCTTCATCGGCCAACCGAACTCTGCAAGAAGATCATTCATCATCTCTCTATTGACGCAACTATTTGTGAATCTTCTTCTTCTTCTTCTTCTTCTTGTCTCTTCAATTGCAGGATAATCGATCGTTCTGGTTCTTCTCCGTTCGCGTTACCGTCGCCGGAGTATCGCACTCGTAGTCGGATTATTATCTGTGAATCGTTTTCAATTCGCAACGGATTTTGTCTCTTTTCAATTTGTAACTTCTTGAGCAGTTTCTGATACTGATTTGTTGTTTTGTGATACGATACTGGAATCGCAAATTAGGTCAAAACATAGTTTAGCAATTTCGATGTACTCTTTCTTTGTTTCCTTATCGGTTCTGTGAGAGAATGAATCGTATCTGTTCTGTCAATTTCCACGGCGAAAAAGTAGATCGTAACCTAAATCGATAGTTCAAGAAATTCTCCGGCATCGTTTCTTGTGAGAATCGATGAATTGAAAGTGTAGTTTCAGAAACCCTAGGAGGATTAGCAGAATCGAGATTCGGAAATGGCGGATTCCGATAACGAATCGGGAGGTCACAACAGCAACACGCACGGCGAGTTGTCGACGAAGGAACAGGACAGATTCTTGCCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCGAAAGATGCGAAGGAGACCGTACAGGAATGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAGGCGTCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTTGGATTCGAAGAGTACGTTGAACCGCTCAAGAGTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTGTGGGAAGACAAGGAGAGAAAGACGGCGGCGCTGGTGGACCTGCCGGCGGTGGAGGGACTAATGGCAGTGGTTCCGGCGGCGGCGGGTTTAACGGAGTTGGTGGAATGTATGGAGGGATGGTGATGATGGGGCATCATCAGGGCGGCGTTTATGGTGGCGCTGGTTTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGTACCGGACACCGGTAACTCCGGCAACTCCGGCGGTGGTTTGGGACTGCTGCAAGGTCAAGCTATGTTTAAAGGTTTTCTTACTTTTGAGCATCATGAATGACTTTTTAGGAAGTTAATAACAATAATAATATTTATTTATTTTTCTTCCTTCCTTTTGGGTCATGGAAATGGAAAATTGTGGAAGAAAACTACTTTGATCTTGTCATTTTTTTTTATTTTATAATTTGGTATAAGTGTAATTTGTGTATTTTATGTGTAATTGTTTTTGGGATATGATAATATTATGATGCATTTTGTACAAGAGTAACCTCTAATCTTGCCCCA

mRNA sequence

AAAAAAACAGAGATTAATTTAGTATAAACTCCAATTATAAAATAAATGAAAAACTATATAAACCATAAACACTGAATTAAAATGATGGCCAGTGGCCCAGTGATGCCGAATTGGCCGTCCAAGATATTTTTAAAATCGACCAAATTAAAAAATAACAAATCATTACTCGCCACGTGTCGGGATTTATACCGCTAGATCATCACCGTATCCAACACTCCAGAAACATCCACGAAGCTTACTCTTATCGACAAATAAACGGTGAGAAACGAAACACGTGTCGCTCCCGATTGCATTATTAGCCGAAACGACGCAACGGACTCTCAACATCTCCCCTTCCCCAGCTCCCTCCACCAGTTTTCTCCGGCGGCGACTTTCCGCTTCCGGCCATCCGCTTCCGGCAACGGCGAAAACTCCGACCAGTCCTTCATCGGCCAACCGAACTCTGCAAGAAGATCATTCATCATCTCTCTATTGACGCAACTATTTGTGAATCTTCTTCTTCTTCTTCTTCTTCTTGTCTCTTCAATTGCAGGATAATCGATCGTTCTGGTTCTTCTCCGTTCGCGTTACCGTCGCCGGAGTATCGCACTCGTAGTCGGATTATTATCTGTGAATCGTTTTCAATTCGCAACGGATTTTGTCTCTTTTCAATTTGTAACTTCTTGAGCAGTTTCTGATACTGATTTGTTGTTTTGTGATACGATACTGGAATCGCAAATTAGGTCAAAACATAGTTTAGCAATTTCGATGTACTCTTTCTTTGTTTCCTTATCGGTTCTGTGAGAGAATGAATCGTATCTGTTCTGTCAATTTCCACGGCGAAAAAGTAGATCGTAACCTAAATCGATAGTTCAAGAAATTCTCCGGCATCGTTTCTTGTGAGAATCGATGAATTGAAAGTGTAGTTTCAGAAACCCTAGGAGGATTAGCAGAATCGAGATTCGGAAATGGCGGATTCCGATAACGAATCGGGAGGTCACAACAGCAACACGCACGGCGAGTTGTCGACGAAGGAACAGGACAGATTCTTGCCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCGAAAGATGCGAAGGAGACCGTACAGGAATGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAGGCGTCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTTGGATTCGAAGAGTACGTTGAACCGCTCAAGAGTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTGTGGGAAGACAAGGAGAGAAAGACGGCGGCGCTGGTGGACCTGCCGGCGGTGGAGGGACTAATGGCAGTGGTTCCGGCGGCGGCGGGTTTAACGGAGTTGGTGGAATGTATGGAGGGATGGTGATGATGGGGCATCATCAGGGCGGCGTTTATGGTGGCGCTGGTTTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGTACCGGACACCGGTAACTCCGGCAACTCCGGCGGTGGTTTGGGACTGCTGCAAGGTCAAGCTATGTTTAAAGGTTTTCTTACTTTTGAGCATCATGAATGACTTTTTAGGAAGTTAATAACAATAATAATATTTATTTATTTTTCTTCCTTCCTTTTGGGTCATGGAAATGGAAAATTGTGGAAGAAAACTACTTTGATCTTGTCATTTTTTTTTATTTTATAATTTGGTATAAGTGTAATTTGTGTATTTTATGTGTAATTGTTTTTGGGATATGATAATATTATGATGCATTTTGTACAAGAGTAACCTCTAATCTTGCCCCA

Coding sequence (CDS)

ATGGCGGATTCCGATAACGAATCGGGAGGTCACAACAGCAACACGCACGGCGAGTTGTCGACGAAGGAACAGGACAGATTCTTGCCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCGAAAGATGCGAAGGAGACCGTACAGGAATGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAGGCGTCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTTGGATTCGAAGAGTACGTTGAACCGCTCAAGAGTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTGTGGGAAGACAAGGAGAGAAAGACGGCGGCGCTGGTGGACCTGCCGGCGGTGGAGGGACTAATGGCAGTGGTTCCGGCGGCGGCGGGTTTAACGGAGTTGGTGGAATGTATGGAGGGATGGTGATGATGGGGCATCATCAGGGCGGCGTTTATGGTGGCGCTGGTTTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGTACCGGACACCGGTAA

Protein sequence

MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTVGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGMYGGMVMMGHHQGGVYGGAGFHHMGIGGGKGGSGGSGTGHR

Homology

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BLAST of Sed0006837.1 vs. NCBI nr
Match: XP_008464158.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_008464159.1 PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >KAA0060811.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa] >TYK08821.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa])

HSP 1 Score: 322.8 bits (826), Expect = 2.1e-84
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAG-GGGTNGSGS----GGGGFNGVGGMYGGMVMMGHHQGGVYGGAGF 180
           GRQGEKDGG GGP G GGG N SG+     GGG+NGVGGMYGG++MMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGGGKGGSGGSGTGHR 196
           HHMGIGGGKGGSG SGTGHR
Sbjct: 181 HHMGIGGGKGGSGASGTGHR 200

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BLAST of Sed0006837.1 vs. NCBI nr
Match: XP_004139999.1 (nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothetical protein Csa_005340 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 5.1e-83
Identity = 179/201 (89.05%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAG-GGGTNGSGS----GGGGFNGVGGMYGGMVMMGHHQGGVYGGAGF 180
           GRQGEKDGG GGP G GGG N SG+     GGG+NGVGGMYGG++MMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGGGKGGSGG-SGTGHR 196
           HHMGIG GKGGSGG SGTGHR
Sbjct: 181 HHMGIGSGKGGSGGASGTGHR 201

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BLAST of Sed0006837.1 vs. NCBI nr
Match: XP_038901772.1 (nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 nuclear transcription factor Y subunit B-3 [Benincasa hispida])

HSP 1 Score: 316.6 bits (810), Expect = 1.5e-82
Identity = 178/202 (88.12%), Postives = 181/202 (89.60%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGV-----GGMYGGMVMMG--HHQGGVYGGA 180
           GRQGEKDGG GGP G G   G G GGGG  GV     GGMYGGM+MMG  HHQGGVYGG 
Sbjct: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGGGGVNSGTTGGMYGGMMMMGHHHHQGGVYGGG 180

Query: 181 GFHHMGIGGGKGGSGGSGTGHR 196
           GFHHMGIGGGKGGSGGSGTGHR
Sbjct: 181 GFHHMGIGGGKGGSGGSGTGHR 202

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BLAST of Sed0006837.1 vs. NCBI nr
Match: XP_023532503.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.9 bits (790), Expect = 3.1e-80
Identity = 177/207 (85.51%), Postives = 182/207 (87.92%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKDGGAGG--------PAGGGGTN---GSGSGGGGFNGVGGMYGGMVMMGHHQGG 180
            G +GEKDGG GG          GGGG N   G G  GGGFNGVGGMYGGM+MMGHHQGG
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGG 180

Query: 181 VYGGAGFHHMGIGGGKGGSGGSGTGHR 196
           VYG  GFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 VYGSGGFHHMGIGGGKGGNGGSGTGHR 207

[Close]

BLAST of Sed0006837.1 vs. NCBI nr
Match: XP_022947534.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-79
Identity = 176/210 (83.81%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKDGGAG-----------GPAGGGGTN---GSGSGGGGFNGVGGMYGGMVMMGHH 180
            G +GEKDGG G           G  GGGG N   G G  GGGFNGVGGMYGGM+MMGHH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 196
           QGGVYG  GFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 QGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

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BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.4e-56
Identity = 131/166 (78.92%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH     G  ST+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDG--GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 VGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGMYGGMV-MMGH 165
            GRQG+K+GG     GGGG  GSGSGG    G     GGMV  MGH
Sbjct: 121 AGRQGDKEGG-----GGGGGAGSGSGGAPMYG-----GGMVTTMGH 154

[Close]

BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 133/225 (59.11%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M DSDNESGG  SN     S +EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RE+EGEK+ +
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA-I 120

Query: 121 GRQGEKDGGAGGPAGGGGTNGSGS--------GGGGFNGVGGMYGGMVMMG--------- 180
           G  G   GG G  + GG  +GSGS          GG+   GG  G ++MMG         
Sbjct: 121 GAAG--SGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQPMYGSPPA 180

Query: 181 -------------HHQGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 196
                        HH   V GG G +  G GGG G S  SG G +
Sbjct: 181 SSAGYAQPPPPHHHHHQMVMGGKGAYGHGGGGGGGPSPSSGYGRQ 221

[Close]

BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N    LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTVGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGM-YGGMVMMGHHQGGVYGGAGF 180
           ++ +GR        GG  G    +  G GGG + G GGM Y       H Q  +YG    
Sbjct: 121 RTGLGRP-----QTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGAT-- 180

Query: 181 HHMGIGGGKGGSGGSGTG 194
                GGG    GG+ +G
Sbjct: 181 -----GGGSDSGGGAASG 186

[Close]

BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-44
Identity = 126/215 (58.60%), Postives = 142/215 (66.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELST-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M DSDN+SGG ++   GELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE++ 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 VGRQGEKDGGAG-GPAGGGGTNGSGSGGGGFNGVGGMYGGMVMM---------------- 180
               G     A   P     T  +  G  G+   G   GGM+MM                
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPMYGSPPPPPQQQ 180

Query: 181 --GHHQGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 196
              HH   + G  GF H   GGG G S  SG G +
Sbjct: 181 QQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHGRQ 215

[Close]

BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 115/184 (62.50%), Postives = 128/184 (69.57%), Query Frame = 0


Query: 17  GELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQR 76
           G+   KEQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEASDKCQR
Sbjct: 52  GDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQR 111

Query: 77  EKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTVGRQGEKDGGAGGPA-- 136
           EKRKTINGDDLLWAMTTLGFE YV PLKSYL +YRE EGEK+ V       GGAGG A  
Sbjct: 112 EKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADV------LGGAGGAAAA 171

Query: 137 --GGGGTNGSGSGGGGFNGVGGMY--GGMVMMGHHQGGVYGGAGFHHMGIGGGKGGSG-G 194
             G GG  G G GG     + G Y   G +   HH      G G   + +GGG  G G  
Sbjct: 172 RHGEGGCCGGGGGGADGVVIDGHYPLAGGLSHSHHGHQQQDGGGDVGLMMGGGDAGVGYN 229

[Close]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL
Match: A0A1S3CMC5 (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAG-GGGTNGSGS----GGGGFNGVGGMYGGMVMMGHHQGGVYGGAGF 180
           GRQGEKDGG GGP G GGG N SG+     GGG+NGVGGMYGG++MMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGGGKGGSGGSGTGHR 196
           HHMGIGGGKGGSG SGTGHR
Sbjct: 181 HHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL
Match: A0A5A7V4W8 (Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00280 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAG-GGGTNGSGS----GGGGFNGVGGMYGGMVMMGHHQGGVYGGAGF 180
           GRQGEKDGG GGP G GGG N SG+     GGG+NGVGGMYGG++MMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGGGKGGSGGSGTGHR 196
           HHMGIGGGKGGSG SGTGHR
Sbjct: 181 HHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL
Match: A0A0A0KFU2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G112490 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.5e-83
Identity = 179/201 (89.05%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGAGGPAG-GGGTNGSGS----GGGGFNGVGGMYGGMVMMGHHQGGVYGGAGF 180
           GRQGEKDGG GGP G GGG N SG+     GGG+NGVGGMYGG++MMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGGGKGGSGG-SGTGHR 196
           HHMGIG GKGGSGG SGTGHR
Sbjct: 181 HHMGIGSGKGGSGGASGTGHR 201

[Close]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL
Match: A0A6J1G731 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111451370 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.8e-79
Identity = 176/210 (83.81%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKDGGAG-----------GPAGGGGTN---GSGSGGGGFNGVGGMYGGMVMMGHH 180
            G +GEKDGG G           G  GGGG N   G G  GGGFNGVGGMYGGM+MMGHH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 196
           QGGVYG  GFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 QGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL
Match: A0A6J1I2E0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111469875 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.7e-79
Identity = 176/210 (83.81%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSN + ELS KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKDGGAG-----------GPAGGGGTN---GSGSGGGGFNGVGGMYGGMVMMGHH 180
            G +GEKDGG G           G  GGGG N   G G  GGGFNGVGGMYGGM+MM HH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180

Query: 181 QGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 196
           QGGVYG  GFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of Sed0006837.1 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 218.0 bits (554), Expect = 6.7e-57
Identity = 131/166 (78.92%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH     G  ST+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDG--GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 VGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGMYGGMV-MMGH 165
            GRQG+K+GG     GGGG  GSGSGG    G     GGMV  MGH
Sbjct: 121 AGRQGDKEGG-----GGGGGAGSGSGGAPMYG-----GGMVTTMGH 154

[Close]

BLAST of Sed0006837.1 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N    LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTVGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGM-YGGMVMMGHHQGGVYGGAGF 180
           ++ +GR        GG  G    +  G GGG + G GGM Y       H Q  +YG    
Sbjct: 121 RTGLGRP-----QTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGAT-- 180

Query: 181 HHMGIGGGKGGSGGSGTG 194
                GGG    GG+ +G
Sbjct: 181 -----GGGSDSGGGAASG 186

[Close]

BLAST of Sed0006837.1 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-43
Identity = 89/138 (64.49%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHG------ELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+  G       L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTVGRQGEKDGGAGG 133
           G+    G+ GE      G
Sbjct: 121 GDTKGSGKGGESSAKRDG 138

[Close]

BLAST of Sed0006837.1 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-42
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    + G  S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 GRQGEKDGGAGGPAGGG 138
           G+ G+   G+   AGGG
Sbjct: 121 GKSGD---GSNRDAGGG 132

[Close]

BLAST of Sed0006837.1 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-42
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    + G  S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTV 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 GRQGEKDGGAGGPAGGG 138
           G+ G+   G+   AGGG
Sbjct: 121 GKSGD---GSNRDAGGG 132

The following BLAST results are available for this feature:

BLAST of Sed0006837.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464158.1	2.1e-84	89.50	PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_0084641...	[more]
XP_004139999.1	5.1e-83	89.05	nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothe...	[more]
XP_038901772.1	1.5e-82	88.12	nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 n...	[more]
XP_023532503.1	3.1e-80	85.51	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947534.1	5.8e-79	83.81	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918...	[more]

BLAST of Sed0006837.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	9.4e-56	78.92	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	3.0e-46	59.11	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	3.3e-45	61.11	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	2.8e-44	58.60	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	1.6e-39	62.50	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Sed0006837.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMC5	1.0e-84	89.50	nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021...	[more]
A0A5A7V4W8	1.0e-84	89.50	Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KFU2	2.5e-83	89.05	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G1124...	[more]
A0A6J1G731	2.8e-79	83.81	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I2E0	3.7e-79	83.81	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0006837.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	6.7e-57	78.92	nuclear factor Y, subunit B3	[more]
AT5G47640.1	2.4e-46	61.11	nuclear factor Y, subunit B2	[more]
AT3G53340.1	9.3e-43	64.49	nuclear factor Y, subunit B10	[more]
AT2G38880.2	2.7e-42	65.69	nuclear factor Y, subunit B1	[more]
AT2G38880.3	2.7e-42	65.69	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 55..73 score: 50.24 coord: 74..92 score: 38.52 coord: 93..111 score: 44.86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR11064:SF128	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	coord: 1..168
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 27..91 e-value: 1.8E-27 score: 95.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 16..133 e-value: 1.5E-47 score: 163.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..126
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..168
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 58..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006837	Sed0006837	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006837.1-five_prime_utr	Sed0006837.1-five_prime_utr-LG01:4274438..4275384	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006837.1-exon	Sed0006837.1-exon-LG01:4274438..4276281	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006837.1-cds	Sed0006837.1-cds-LG01:4275385..4275972	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006837.1-three_prime_utr	Sed0006837.1-three_prime_utr-LG01:4275973..4276281	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006837.1	Sed0006837.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding