Sed0006346.5 (mRNA) Chayote v1

Overview


Name	Sed0006346.5
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	tRNA pseudouridine synthase
Location	LG09: 6686082 .. 6690795 (-)
Sequence length	1342
RNA-Seq Expression	Sed0006346.5
Synteny	Sed0006346.5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTAAGCAAAGATCCATTTTGAATGTTGAATTGAAACAAAAGACTTGGAAGAGAAGGATGAGGAACTGGGTAGCGGGTTCAACAGTTGTTCCTTCCAATCCCATTTCACCGACCTTCACATCTCCAAATCGCTCATCATCTTCCACAGCTCGCAGATTCTCGGTAATGCCCAATTCTTCTCTAATCTCTCCTCATATTTTCATGGCTCAGTTTTCACCAATCCCATATTGATTCTTCAGAAGAATGCACAGGATTCTTGTTATGTTGCAGAGCCTTATTCCCCTGGCTTTAAATGGCGGTTGCTCATTGCTTATGATGGTACTCCATATGCAGGTCCGGGTTTCTTTTTTGTGGCGAATGTATTCAACCATTTTGTATGCTTGTTCTTGGTTTAGCCTTATATGACGACTCTAATTCCTAATTGGATTAAGCTTTAGTCTGCAACGAGTGTGACAGTACTCGAAAGCTTGGGCTTTGAAGGTGTGCTTGCCTCAAAGTCTCAGTTCGAGTCTTACATTAATTTAAAGATACCTGATACTTCCCGTGTCTCTCTCTTTTTCGATTTCTCCCGATATCTGGCCTAGGGACGGGCTTTGAATGTGTGCTCCCCTTAAAGTTTCAAGTTCCAAACTCACCTGTGACATTAATTTGTAGACACCTCTCATGTCTCCATTCTTTTGATGTTTCCCGCTCCCTGACCCTAGGAAGCACGAACACATCTATTTTGACAATGTATCCGAGTTGTACTCGTGTAAAACCAGTGTTTACAAGGCCATCACCTTTCCTCGCCTATGGCCATCGCCTTGCACATAGGCAGGTATTGCGCCTCTAACATAGCTAAGGCGAGCTCCTTCAATCAGGCCCTCGCATTTCCTCGCCATTTTGCGCTTTGCATCGCCTTCGCGTTAGGCCAAGGCGTGCGCCTTGTTAAAGTTTTATTTATTTATTAATATCATAACTTAATATCCACAAAAAGAACCTATAATTCGTTTATGAAGAAGTTCAACAACTATGTGAAGTCTTTATTAAGAATATTTAATTTTTTAATTGCTATTTCAAATATATGTGTGTTTGTTTATTAGAGTTATTTGATGTAAAATCTTTGTACGTTTAGTTAACTTCAATTTTTTTTTATACAAATAATAATTTAATATTATGGTATATCTTATAATAACATAATTTTTGTGATTTATTATTCTTTTATTTTTTACTTTTTAGTATTTTTCCATATGAATTTATAGTTTTATGAGAATAAACATATGTTTTATTATCAATTTATAAATGCGCCTCTCTTCACTCGGGTCTTGCCTTTTTATCGCCTCTCGCTTTGCTTTGAGGTTATCAAGGAGAGTATCGCCTTGTGTTGTGCCTTGCGCTTTGAAAACACTATGTCCAACACAGATATTTCCGGACAATCAACGGACACGTGTCCGACACTCAAAATTTTGTGTTTTCTTTTATTATTATTATTTTCAATTTCAGACACTTCATGGACACCTCAATTAAAACTTATTTGTTTCTAATGGCGGATGACACGACAATGCGTAGTGTTAGTGGAGGCCGTCAATGACGATGTCTATCGAAGAAAGATGAACTAAAATGAAAAAAGGAAGGAAAGAGAGAAAATAAAATGGAGGGAAGGAAAATGAGATAAAAACTAAAATATTTAGATATTATTATGGGTAGGTTTATAACTAGCGAAAATATTTTGGTTTTCATATTTTAATAGTATATTATATAAAATAATAATAAATCACGTGTCCTCGACGTATCTGTGTTCTGCATTTTTAAATAATGGCGTGTCTACGTGTCCGTATAGTGTCGTGTCCGTATCTTGTGTCCGTGCTTCTTAGTCTTGACCTAGGGACGGACATGGTTATCCCGAGTATAGTAGAGCGAAGCTCCGATTTTCCAGTTAAAAAACTGTATATATGTTTGCAGTAGAGAAAGCCACCCTGAGTAACTAAATAAGGGCTATAGATATAATAGATTATGGTTGGGTTAACCTAGTGTAAATAGAGAATTAAGAAAACAAGATGGAATGGATTTAATCTATAATAGAAAGTTAGCTAAGATACATCTTTTTTCTGTTTGACGATTGAGTTGTGAGATTAGTTGAAGTAAGCTGACTCGGACACTATTAATAAAAATGAGGAATTTGAACCCATAACCTTTTAGTTTGTGGGCACATTTATGCCTGCTGAGCTACTGGGGGGTTTAGAAGAAATATGTTCATTCCTTCGATTTAATGCAATCTTATGACTCTTATTCGCCATTTCAATTGCTATGGGAATACATACTTCTTCCCTTTAGCATTTATATGCTATTTAATTGCATGGATCCCATATCATTCTTTAATGATTCATAAATTATCGACGAACCCAAAAGTTTAAGTTGATAGGTTATGATAAATTTAATTATATCAACCAACACTCTTCTCTACTTGTGGACTTCAAAATTATGTCAATCATGTGGAAATTAACATTAATTAAGGAGAAAACGACTTCAAAGGAGTGTGAATATATGATCTCCCCTATGATTCCATGTTAAATCATGTTAAATTATGTTAAATTACGTCTCCAAGGGGTGGCACAGTGGTTGAAGACTTGGAATTTGAGGGTATGCTTCTCTTGAAGTCCCAGGTTCGAAACTTACCTATGACATTACGTGGTTACCTTATTTCAAAAAAAAAATTATATTAAATTTCCACTAATCCCAAAAGCTTAAGTTGATATGTAGGAGTAAATTTAATTATATCAACTAACATAACAGACAATAAATGGAAAATTTTCATACTATCTAGGACTAGAAAATCTCCCATTGATTTAGCTAGCTTTAAGTTATCTTAAAGATACGTGAATTGGGGTCCGGTCACCGGTGTGAATTATGAGTTAGAGAAGTTTTTTCCATTAGTTTGAATTCCTGCGCTCACTACTTCAGTTTTGATGCTCTCTGTCTTTGTTTCAAATATGTTGATATTAAATCAGGCTGGCAATATCAGCAGTCACCGCCTACCATCCAGTGCCTGATTGAAAAAGCCTTGACTCAAGCAACAAAGGTTGAAAGGAAGGATCTCCGTTTAGTTGGTGCGAGCCGAACAGATACAGGAGTTCATGCCTGGGGACAGGTCTGATGTGCTTTTATGGAGTTGGCTTAAACACATTGTTGGAAAACAATGCTTGGTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCACACTTTGTTACGCCATTTAGCTTCGATAGCTTGGAAACGGTTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATTAGAGTTCGGGAGATTAGTCCTGCTGTTCCCGACTTTCATGCGCGATTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGACACCATCTTGGATCCATTTCAGCGCTTCTACGCTTACCAATGCCTTTATAAACTCAATTCTGCAGTCATGAGAGAAGCTGCGAGTTATTTCATTGGAAAGCATGATTTTTCGGCTTTTGCGAATGCAGCGCAGAATGATCGAGTGGGAAATCCAGTGAAGGTCATTTTTCGGTTTGATGTCATAGAAATGGTAAAGTTTTTAGGTTCTATCTGTCAATGGTTTTTTTTTTCTTTCTATTCGGCTTCTCACGAGTTTAATATGGCTAGTCATGTGTTAATCATTCTGTTTTCAGCTTTATACAAAAACTATGTGGTTAAATGCTTAGCATTCGGTTGTTTTCTTTGTTCAGGGACCTCTAATTCAGCTAGAAGTTGAGGGCTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTAATTATATTTGTTACACTTTTTTTTAGTCCAAGTTATTTTGTCCGACTTTACTTGGTAAATTCTTGTTGCCACAATGACTTGTATTATGAAATAATTGTAAACAACGACCAATAATAAAGAAAGTGTGAGACAAAGAACACCTCGATTTATGTGGTTCACTAATATTGTATTAGGCCAGCTACATTCACGAGTAGAGGAAAACAACTCTTTTATTTAGGAGATTGTAGGTAAAGAGGATAAAGATTTTATCCAAATTACATAAAAGCCTAATACGAAAATATAAAAACATAGTTAAAATATTTTCTAGGTTTCGGGGTGTTGAACCTTCATCGTGTGCTTCACCTTGGACCCCTCGTAATGTGACATAATTAGTTCAAGGCATTTCGAGAGCTTGTTTTTTTTATAATAAGCTTAGATTCAATTTTCTTAAGTCGGGTTTCATCGTGCAACTGTAAGCATTTCTCCATTACTTTTGCAGGTTGGCTTGTTGATTCAAATTGGAAAGGAAGCAATTTCTCCTGATGTTGTTCCTCAGATTTTGGCTTCTCGAGATCGCAAGGAGCTCGCCAAGTACGCTCCCTTCATTCCCCCTCACGGGCTCTGTCTTGTGAGCATTAAATATAACGAGGACCATCTAAAGCTTCCATCTGGTAGCCCTGGGACTAGTTCTGGTAGGTATCATACTGTGAGCAAATGTAAACTACCTTTTTATTGAATTCATGACAGTTTACAGGTCTGTTCTTACACTTTTGCCAATGACCATGAGCATAGTTTCCTGAGGATGAAATATTAGATTGCTAGTATGATTTAGTTAATTTTGGATTAGTTAGTTTGTAATATATATGAATTAGTATTTTAGTGTTAGGTTGTTATTTGTAGTTTTAATATTGCATAACTTGTATTGAGACTTTG

mRNA sequence

GCCCTAAGCAAAGATCCATTTTGAATGTTGAATTGAAACAAAAGACTTGGAAGAGAAGGATGAGGAACTGGGTAGCGGGTTCAACAGTTGTTCCTTCCAATCCCATTTCACCGACCTTCACATCTCCAAATCGCTCATCATCTTCCACAGCTCGCAGATTCTCGAAGAATGCACAGGATTCTTGTTATGTTGCAGAGCCTTATTCCCCTGGCTTTAAATGGCGGTTGCTCATTGCTTATGATGGTACTCCATATGCAGGCTGGCAATATCAGCAGTCACCGCCTACCATCCAGTGCCTGATTGAAAAAGCCTTGACTCAAGCAACAAAGGTTGAAAGGAAGGATCTCCGTTTAGTTGGTGCGAGCCGAACAGATACAGGAGTTCATGCCTGGGGACAGGTCTGATGTGCTTTTATGGAGTTGGCTTAAACACATTGTTGGAAAACAATGCTTGGTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCACACTTTGTTACGCCATTTAGCTTCGATAGCTTGGAAACGGTTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATTAGAGTTCGGGAGATTAGTCCTGCTGTTCCCGACTTTCATGCGCGATTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGACACCATCTTGGATCCATTTCAGCGCTTCTACGCTTACCAATGCCTTTATAAACTCAATTCTGCAGTCATGAGAGAAGCTGCGAGTTATTTCATTGGAAAGCATGATTTTTCGGCTTTTGCGAATGCAGCGCAGAATGATCGAGTGGGAAATCCAGTGAAGGTCATTTTTCGGTTTGATGTCATAGAAATGGGACCTCTAATTCAGCTAGAAGTTGAGGGCTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGGCTTGTTGATTCAAATTGGAAAGGAAGCAATTTCTCCTGATGTTGTTCCTCAGATTTTGGCTTCTCGAGATCGCAAGGAGCTCGCCAAGTACGCTCCCTTCATTCCCCCTCACGGGCTCTGTCTTGTGAGCATTAAATATAACGAGGACCATCTAAAGCTTCCATCTGGTAGCCCTGGGACTAGTTCTGGTAGGTATCATACTGTGAGCAAATGTAAACTACCTTTTTATTGAATTCATGACAGTTTACAGGTCTGTTCTTACACTTTTGCCAATGACCATGAGCATAGTTTCCTGAGGATGAAATATTAGATTGCTAGTATGATTTAGTTAATTTTGGATTAGTTAGTTTGTAATATATATGAATTAGTATTTTAGTGTTAGGTTGTTATTTGTAGTTTTAATATTGCATAACTTGTATTGAGACTTTG

Coding sequence (CDS)

ATGCTTGGTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCACACTTTGTTACGCCATTTAGCTTCGATAGCTTGGAAACGGTTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATTAGAGTTCGGGAGATTAGTCCTGCTGTTCCCGACTTTCATGCGCGATTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGACACCATCTTGGATCCATTTCAGCGCTTCTACGCTTACCAATGCCTTTATAAACTCAATTCTGCAGTCATGAGAGAAGCTGCGAGTTATTTCATTGGAAAGCATGATTTTTCGGCTTTTGCGAATGCAGCGCAGAATGATCGAGTGGGAAATCCAGTGAAGGTCATTTTTCGGTTTGATGTCATAGAAATGGGACCTCTAATTCAGCTAGAAGTTGAGGGCTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGGCTTGTTGATTCAAATTGGAAAGGAAGCAATTTCTCCTGATGTTGTTCCTCAGATTTTGGCTTCTCGAGATCGCAAGGAGCTCGCCAAGTACGCTCCCTTCATTCCCCCTCACGGGCTCTGTCTTGTGAGCATTAAATATAACGAGGACCATCTAAAGCTTCCATCTGGTAGCCCTGGGACTAGTTCTGGTAGGTATCATACTGTGAGCAAATGTAAACTACCTTTTTATTGA

Protein sequence

MLGVAYNKLRFQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

Homology

[Close]

BLAST of Sed0006346.5 vs. NCBI nr
Match: XP_023549334.1 (uncharacterized protein LOC111807720 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 115 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 174

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFANAA NDRV NPVKV+FRFDVI
Sbjct: 175 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVI 234

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IP
Sbjct: 235 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIP 294

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           PHGLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 295 PHGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Sed0006346.5 vs. NCBI nr
Match: XP_023549333.1 (uncharacterized protein LOC111807720 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 117 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 176

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFANAA NDRV NPVKV+FRFDVI
Sbjct: 177 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVI 236

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IP
Sbjct: 237 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIP 296

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           PHGLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 297 PHGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 337

[Close]

BLAST of Sed0006346.5 vs. NCBI nr
Match: XP_023549335.1 (uncharacterized protein LOC111807720 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 115 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 174

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFANAA NDRV NPVKV+FRFDVI
Sbjct: 175 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVI 234

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IP
Sbjct: 235 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIP 294

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           PHGLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 295 PHGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Sed0006346.5 vs. NCBI nr
Match: XP_023549337.1 (uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 113 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 172

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFANAA NDRV NPVKV+FRFDVI
Sbjct: 173 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVI 232

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IP
Sbjct: 233 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIP 292

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           PHGLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 293 PHGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 333

[Close]

BLAST of Sed0006346.5 vs. NCBI nr
Match: XP_038875516.1 (tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 380.9 bits (977), Expect = 7.6e-102
Identity = 181/221 (81.90%), Postives = 198/221 (89.59%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSLE+VHAALNGLLP DIRVREISPA PDFHARFST+SKVYHYKIYN  
Sbjct: 114 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAAPDFHARFSTLSKVYHYKIYNGA 173

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAF NAA NDRV NPVKVIFRFDVI
Sbjct: 174 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNDRVVNPVKVIFRFDVI 233

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           +MGPL+QLEVEGSGFLYRQVRNMVGLL+QIGKEAI PDVVP+ILAS+DR+ELAKYA  +P
Sbjct: 234 DMGPLVQLEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASQDRRELAKYASGVP 293

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCLVSI Y EDHLKLPS  PGTS GR  +VSKCKLPFY
Sbjct: 294 PQGLCLVSINYKEDHLKLPSDCPGTSVGRNRSVSKCKLPFY 334

[Close]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot
Match: Q6MEE7 (tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=truA1 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-36
Identity = 75/196 (38.27%), Postives = 121/196 (61.73%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF      D L  +H +LNGLLP DIR++ + P  P FH+++S I K YHY ++ + 
Sbjct: 61  QVAHFHFQDYID-LSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNK 120

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVG-NPVKVIFRFDV 131
           ++DPFQR Y++    K++  ++++AA  F G HDF++FAN A       NPV+ ++R D+
Sbjct: 121 VMDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDI 180

Query: 132 IEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFI 191
                 ++LE EG GFLY+ VRN+VG L+ +     + + + QI A+++R++ +  A   
Sbjct: 181 KPNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAA--- 240

Query: 192 PPHGLCLVSIKYNEDH 207
           PP GL L+ + Y  ++
Sbjct: 241 PPEGLFLIQVFYENEN 252

[Close]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot
Match: B1I1B5 (tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=truA PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-36
Identity = 79/194 (40.72%), Postives = 112/194 (57.73%), Query Frame = 0


Query: 10  RFQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYN 69
           R QV +FVT       E + AALNG+LP DI   +      DFHAR+S ++K Y Y +YN
Sbjct: 60  RGQVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYN 119

Query: 70  DTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFD 129
             +  PFQR Y+      L+   MR AA + +G+HDFS F  A +   V + V+ + R D
Sbjct: 120 HPVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGR--PVQSAVRTLTRAD 179

Query: 130 VIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPF 189
           +    PL++L     GFLY  VR M G L+++G E + P+ +P I+AS DR   A+  P 
Sbjct: 180 IEAQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDR---ARAGPT 239

Query: 190 IPPHGLCLVSIKYN 204
           +PPHGLCL  ++Y+
Sbjct: 240 VPPHGLCLEEVEYD 248

[Close]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot
Match: P70973 (tRNA pseudouridine synthase A OS=Bacillus subtilis (strain 168) OX=224308 GN=truA PE=3 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 3.9e-32
Identity = 81/192 (42.19%), Postives = 108/192 (56.25%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QV HF TP S  + E    ALN LLP DI V++   A   FHARFS + K Y Y +Y + 
Sbjct: 61  QVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEK 120

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
             D F+R YAY   Y+LN   MREAA + IG HDF++F   A    V + V+ I+  D  
Sbjct: 121 HPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSF--CAAKTEVQDKVRTIYELDWT 180

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           E    +Q+ + GSGFLY  VR + G L+  G   ISPD V  +L ++DR+   + A   P
Sbjct: 181 ETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTA---P 240

Query: 192 PHGLCLVSIKYN 204
            HGL L ++ Y+
Sbjct: 241 GHGLYLWNVYYD 246

[Close]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot
Match: A4J151 (tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=truA PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 71/177 (40.11%), Postives = 105/177 (59.32%), Query Frame = 0


Query: 26  ETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCL 85
           E    ALN LLP DI+V +      DFHARFS ++K Y Y IY+  ++ PF R+Y Y   
Sbjct: 76  EKAPLALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHRVMSPFHRYYCYHEP 135

Query: 86  YKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSG 145
            +L+   M+E A+Y +G +DF +F   AQ   V + ++ I+R D+IE  P+I L + G+G
Sbjct: 136 RRLDVNAMQEGAAYLLGTYDFKSF--QAQGTPVKDTIRTIYRADIIEDAPVINLYLRGNG 195

Query: 146 FLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY 203
           FLY  VR + G L+ IG   I P+ + +I+ S++R      A   PP GLCL+ ++Y
Sbjct: 196 FLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRTLAGTTA---PPQGLCLMEVEY 247

[Close]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot
Match: Q814C2 (tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) OX=226900 GN=truA1 PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 7.3e-31
Identity = 73/192 (38.02%), Postives = 109/192 (56.77%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QV HF TP S +  +  + ALN +LP DI +R++     +FHAR+    K Y Y++    
Sbjct: 61  QVIHFDTPLSLEEWQWSN-ALNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSK 120

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
             D F+R Y YQ  Y L    +R+A  YFIG HDF++F +A  + +  + V+ I+  ++I
Sbjct: 121 TADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELI 180

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           E    I     G+GFLY  VR +VG L+ +G+  + PD +P+ILA ++R+   K A   P
Sbjct: 181 EQDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMA---P 240

Query: 192 PHGLCLVSIKYN 204
            HGL L  + YN
Sbjct: 241 GHGLYLWEVNYN 246

[Close]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL
Match: A0A6J1L0L1 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 183/221 (82.81%), Postives = 196/221 (88.69%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 113 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 172

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVI
Sbjct: 173 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 232

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILASRDRK LAKY   IP
Sbjct: 233 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILASRDRKVLAKYTTCIP 292

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 293 PQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 333

[Close]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL
Match: A0A6J1L2M8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 183/221 (82.81%), Postives = 196/221 (88.69%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 115 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 174

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVI
Sbjct: 175 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 234

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILASRDRK LAKY   IP
Sbjct: 235 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILASRDRKVLAKYTTCIP 294

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 295 PQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL
Match: A0A6J1H621 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 181/221 (81.90%), Postives = 197/221 (89.14%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 114 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDA 173

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVI
Sbjct: 174 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 233

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PD+VP+ILA+RDRKELAKY   IP
Sbjct: 234 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIP 293

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 294 PQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 334

[Close]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL
Match: A0A6J1H4M7 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 181/221 (81.90%), Postives = 197/221 (89.14%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++DSL+ +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYND 
Sbjct: 116 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDA 175

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
           ILDPFQR Y Y C+YKLN A M+EAA+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVI
Sbjct: 176 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 235

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PD+VP+ILA+RDRKELAKY   IP
Sbjct: 236 EMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIP 295

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Sbjct: 296 PQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 336

[Close]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL
Match: A0A6J1C9Y0 (tRNA pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111009557 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 184/221 (83.26%), Postives = 195/221 (88.24%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHF+TPF++ SLE VHAALNGLLPADIRVREISPA+P FHARFSTISKVYHYKIYNDT
Sbjct: 121 QVAHFITPFNYHSLENVHAALNGLLPADIRVREISPAMPHFHARFSTISKVYHYKIYNDT 180

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
            LDPF R Y Y C YKLN AVMREAA+YFIGKHDFSAFANAA NDRVGNPVK+IFRFDVI
Sbjct: 181 FLDPFHRCYTYHCAYKLNYAVMREAANYFIGKHDFSAFANAAHNDRVGNPVKIIFRFDVI 240

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIP 191
           EMG L+QLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILASRDRKELAKYA   P
Sbjct: 241 EMGALVQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILASRDRKELAKYASGAP 300

Query: 192 PHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
           P GLCL++I YNEDHLK PS  P TS GR H VSKCKLPFY
Sbjct: 301 PQGLCLMTINYNEDHLKFPSDCPETSFGRRHHVSKCKLPFY 341

[Close]

BLAST of Sed0006346.5 vs. TAIR 10
Match: AT3G06950.1 (Pseudouridine synthase family protein )

HSP 1 Score: 331.3 bits (848), Expect = 6.4e-91
Identity = 158/222 (71.17%), Postives = 185/222 (83.33%), Query Frame = 0


Query: 12  QVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDT 71
           QVAHFVTPF++ SL++ HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYNDT
Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDT 161

Query: 72  ILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVI 131
            +DPFQR +AY C YKLN++ MREAA+ F+GKHDFSAFANA + D V +P+K I RFDVI
Sbjct: 162 FMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVI 221

Query: 132 EMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPF-I 191
           +MG L+QLEVEGSGFLYRQVRNMV LLIQIGKEA+  D+VP IL ++DR+ LAKY     
Sbjct: 222 QMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPA 281

Query: 192 PPHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY 233
            PHGLCLVS+KY EDHLKLP   P TSSGR+HT++KCKLPFY
Sbjct: 282 SPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPFY 323

[Close]

BLAST of Sed0006346.5 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-12
Identity = 53/164 (32.32%), Postives = 69/164 (42.07%), Query Frame = 0


Query: 32  LNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSA 91
           LN  LP DIRV   SPA  DFHARFS  ++ Y Y  +                   LN +
Sbjct: 191 LNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQ----------------NLNLS 250

Query: 92  VMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGP---------LIQLEVE 151
            M  A   FIG+HDF  F        V N      R    E+ P         L    + 
Sbjct: 251 AMDFAGKKFIGEHDFRNFCKM----DVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMR 310

Query: 152 GSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKY 187
           GS FL+ Q+R MV +L  IG+   S DV+  +L ++      +Y
Sbjct: 311 GSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQY 334

The following BLAST results are available for this feature:

BLAST of Sed0006346.5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549334.1	1.8e-103	83.26	uncharacterized protein LOC111807720 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023549333.1	1.8e-103	83.26	uncharacterized protein LOC111807720 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023549335.1	1.8e-103	83.26	uncharacterized protein LOC111807720 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023549337.1	1.8e-103	83.26	uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_038875516.1	7.6e-102	81.90	tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0006346.5 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6MEE7	7.5e-36	38.27	tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=...	[more]
B1I1B5	7.5e-36	40.72	tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477...	[more]
P70973	3.9e-32	42.19	tRNA pseudouridine synthase A OS=Bacillus subtilis (strain 168) OX=224308 GN=tru...	[more]
A4J151	1.5e-31	40.11	tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=3491...	[more]
Q814C2	7.3e-31	38.02	tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 /...	[more]

BLAST of Sed0006346.5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0L1	4.8e-102	82.81	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A6J1L2M8	4.8e-102	82.81	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A6J1H621	4.8e-102	81.90	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 S...	[more]
A0A6J1H4M7	4.8e-102	81.90	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 S...	[more]
A0A6J1C9Y0	8.2e-102	83.26	tRNA pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111009557 PE=3 ...	[more]

BLAST of Sed0006346.5 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06950.1	6.4e-91	71.17	Pseudouridine synthase family protein	[more]
AT1G34150.1	7.8e-12	32.32	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001406	Pseudouridine synthase I, TruA	PIRSF	PIRSF001430	PSU-A	coord: 10..213 e-value: 1.1E-53 score: 180.2
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 12..212
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 12..202 e-value: 1.19849E-79 score: 236.986
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 9..58 e-value: 2.1E-5 score: 26.7
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 59..200 e-value: 9.6E-39 score: 134.3
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 96..203 e-value: 5.7E-27 score: 94.3
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 12..212
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 11..207

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006346	Sed0006346	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006346.5-three_prime_utr	Sed0006346.5-three_prime_utr-LG09:6686082..6686278	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006346.5-exon	Sed0006346.5-exon-LG09:6686082..6686515	exon
Sed0006346.5-exon	Sed0006346.5-exon-LG09:6686997..6687059	exon
Sed0006346.5-exon	Sed0006346.5-exon-LG09:6687220..6687806	exon
Sed0006346.5-exon	Sed0006346.5-exon-LG09:6690461..6690554	exon
Sed0006346.5-exon	Sed0006346.5-exon-LG09:6690632..6690795	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006346.5-cds	Sed0006346.5-cds-LG09:6686279..6686515	CDS
Sed0006346.5-cds	Sed0006346.5-cds-LG09:6686997..6687059	CDS
Sed0006346.5-cds	Sed0006346.5-cds-LG09:6687220..6687618	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006346.5-five_prime_utr	Sed0006346.5-five_prime_utr-LG09:6687619..6687806	five_prime_UTR
Sed0006346.5-five_prime_utr	Sed0006346.5-five_prime_utr-LG09:6690461..6690554	five_prime_UTR
Sed0006346.5-five_prime_utr	Sed0006346.5-five_prime_utr-LG09:6690632..6690795	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006346.5	Sed0006346.5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0034196	acylglycerol transport
biological_process	GO:1990052	ER to chloroplast lipid transport
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0070300	phosphatidic acid binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity