Sed0006165.1 (mRNA) Chayote v1

Overview


Name	Sed0006165.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	crooked neck-like protein 1
Location	LG08: 28067965 .. 28068894 (-)
Sequence length	930
RNA-Seq Expression	Sed0006165.1
Synteny	Sed0006165.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGTCCAAAGATTCCGATCCAACTCGAAAGGATGCGAAGAAGGTGAAGTTGGCGCCGGGAGCCAGTAGGGTGAAGAACAAAACTCCTGCTCCAATTCAGATTACTGCAGAGCAGATACTTCGCGAGTCTCGTGAACTACAAGAACCCGAATTCAGACCGCCTAAGCAGAAGATTGCAGATCCAACTGAACTTTCTGATTATCGTCTCCGCAAGCGTAACGAATTCGAGCATCTTCTAAGGCGTGTTCGCTGGAATATCAGCGTTTGGATCAGGTATGCTCACTGGGAAGAGTCACACAAGGACTTCCATCGGGCTCGTTCTGTTTGGGAGCGCACTCTTGAGGTCGATTATCGCAACCATACTCTTTGGCTCAAGTATGCCGAGTTTGAGATGAAGAATAAATTTATCAATCCCGCAAGGAACGTTTGGGATCGAGCCGTCACCCTCTTGCCCAGAGTCGACCAGCTTTGGTATAAATACATTCATATGGAGCAAATGCTGGGTAACTTCGCTGGTGCAAGGCAGATTTTTGAGAGATGGATGGCTTGGATGCCCAACCAACAAGCTTGGCTCTCTTACATCAAGTTTGAGTTGAGACACAATGAGCTTCTATGTGCTCGAGCCATATTTGAGCGCTTTGTTCAATGCCACCCCAAACCCGAGCCATGGATACGTTTCGCAAAGTTTGAGATGAAAAATGGGGATCTTGCAAAAGCCAGAGATGTCTACGAGAGAGCGGTTGAGGAGTTGCCTATTGATGATGCAGAGCAACTCTTTATTGCTTTTGCCGAATTCGAGGAGAGGTGTAAAGAAACTCAACGAGCACGGTGTATATTTAACTTTGCCCTAGATCATATTCCCGAAGGTAGAGCCGAAGATATCTATCGCAAGTTTGTGGTATTTGAGAGTCAATATGGGAGATAA

mRNA sequence

ATGTCTTCGTCCAAAGATTCCGATCCAACTCGAAAGGATGCGAAGAAGGTGAAGTTGGCGCCGGGAGCCAGTAGGGTGAAGAACAAAACTCCTGCTCCAATTCAGATTACTGCAGAGCAGATACTTCGCGAGTCTCGTGAACTACAAGAACCCGAATTCAGACCGCCTAAGCAGAAGATTGCAGATCCAACTGAACTTTCTGATTATCGTCTCCGCAAGCGTAACGAATTCGAGCATCTTCTAAGGCGTGTTCGCTGGAATATCAGCGTTTGGATCAGGTATGCTCACTGGGAAGAGTCACACAAGGACTTCCATCGGGCTCGTTCTGTTTGGGAGCGCACTCTTGAGGTCGATTATCGCAACCATACTCTTTGGCTCAAGTATGCCGAGTTTGAGATGAAGAATAAATTTATCAATCCCGCAAGGAACGTTTGGGATCGAGCCGTCACCCTCTTGCCCAGAGTCGACCAGCTTTGGTATAAATACATTCATATGGAGCAAATGCTGGGTAACTTCGCTGGTGCAAGGCAGATTTTTGAGAGATGGATGGCTTGGATGCCCAACCAACAAGCTTGGCTCTCTTACATCAAGTTTGAGTTGAGACACAATGAGCTTCTATGTGCTCGAGCCATATTTGAGCGCTTTGTTCAATGCCACCCCAAACCCGAGCCATGGATACGTTTCGCAAAGTTTGAGATGAAAAATGGGGATCTTGCAAAAGCCAGAGATGTCTACGAGAGAGCGGTTGAGGAGTTGCCTATTGATGATGCAGAGCAACTCTTTATTGCTTTTGCCGAATTCGAGGAGAGGTGTAAAGAAACTCAACGAGCACGGTGTATATTTAACTTTGCCCTAGATCATATTCCCGAAGGTAGAGCCGAAGATATCTATCGCAAGTTTGTGGTATTTGAGAGTCAATATGGGAGATAA

Coding sequence (CDS)

ATGTCTTCGTCCAAAGATTCCGATCCAACTCGAAAGGATGCGAAGAAGGTGAAGTTGGCGCCGGGAGCCAGTAGGGTGAAGAACAAAACTCCTGCTCCAATTCAGATTACTGCAGAGCAGATACTTCGCGAGTCTCGTGAACTACAAGAACCCGAATTCAGACCGCCTAAGCAGAAGATTGCAGATCCAACTGAACTTTCTGATTATCGTCTCCGCAAGCGTAACGAATTCGAGCATCTTCTAAGGCGTGTTCGCTGGAATATCAGCGTTTGGATCAGGTATGCTCACTGGGAAGAGTCACACAAGGACTTCCATCGGGCTCGTTCTGTTTGGGAGCGCACTCTTGAGGTCGATTATCGCAACCATACTCTTTGGCTCAAGTATGCCGAGTTTGAGATGAAGAATAAATTTATCAATCCCGCAAGGAACGTTTGGGATCGAGCCGTCACCCTCTTGCCCAGAGTCGACCAGCTTTGGTATAAATACATTCATATGGAGCAAATGCTGGGTAACTTCGCTGGTGCAAGGCAGATTTTTGAGAGATGGATGGCTTGGATGCCCAACCAACAAGCTTGGCTCTCTTACATCAAGTTTGAGTTGAGACACAATGAGCTTCTATGTGCTCGAGCCATATTTGAGCGCTTTGTTCAATGCCACCCCAAACCCGAGCCATGGATACGTTTCGCAAAGTTTGAGATGAAAAATGGGGATCTTGCAAAAGCCAGAGATGTCTACGAGAGAGCGGTTGAGGAGTTGCCTATTGATGATGCAGAGCAACTCTTTATTGCTTTTGCCGAATTCGAGGAGAGGTGTAAAGAAACTCAACGAGCACGGTGTATATTTAACTTTGCCCTAGATCATATTCCCGAAGGTAGAGCCGAAGATATCTATCGCAAGTTTGTGGTATTTGAGAGTCAATATGGGAGATAA

Protein sequence

MSSSKDSDPTRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRPPKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELPIDDAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYGR

Homology

[Close]

BLAST of Sed0006165.1 vs. NCBI nr
Match: XP_022152908.1 (crooked neck-like protein 1 [Momordica charantia] >XP_022152909.1 crooked neck-like protein 1 [Momordica charantia] >XP_022152910.1 crooked neck-like protein 1 [Momordica charantia])

HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142
Identity = 258/314 (82.17%), Postives = 279/314 (88.85%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MSSSKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSSSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQIFERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. NCBI nr
Match: KAG6586009.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 256/314 (81.53%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MS SKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSYSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. NCBI nr
Match: XP_022964730.1 (crooked neck-like protein 1 [Cucurbita moschata] >XP_022964731.1 crooked neck-like protein 1 [Cucurbita moschata])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 254/314 (80.89%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MSSSKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSSSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWN+SVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++ KAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEITKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           D+YRKFV FE QYG
Sbjct: 301 DLYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. NCBI nr
Match: KAG7020791.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 256/314 (81.53%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MS SKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 47  MSYSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 106

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 107 PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 166

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 167 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 226

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 227 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 286

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 287 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 346

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 347 DIYRKFVAFEKQYG 358

[Close]

BLAST of Sed0006165.1 vs. NCBI nr
Match: XP_022938253.1 (crooked neck-like protein 1 [Cucurbita moschata])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 256/314 (81.53%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MS SKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSYSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot
Match: P63154 (Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-91
Identity = 164/290 (56.55%), Postives = 215/290 (74.14%), Query Frame = 0


Query: 21  PGASRVKNKTPAPIQITAEQILRESRELQ-EPEFRPPKQKIADPTELSDYRLRKRNEFEH 80
           P  ++VKNK PA +QITAEQ+LRE++E + E    PP+QKI D  EL+DY+LRKR  FE 
Sbjct: 13  PKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFED 72

Query: 81  LLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFIN 140
            +R+ R  IS WI+YA WEES K+  RARS++ER L+VDYRN TLWLKYAE EMKN+ +N
Sbjct: 73  NIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVN 132

Query: 141 PARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFE 200
            ARN+WDRA+T LPRV+Q WYKY +ME+MLGN AGARQ+FERWM W P +QAW SYI FE
Sbjct: 133 HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 192

Query: 201 LRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELPIDDA-E 260
           LR+ E+  AR I+ERFV  HP  + WI++A+FE K+   A AR VYERAVE    +   E
Sbjct: 193 LRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE 252

Query: 261 QLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
            L++AFA+FEE  KE +R R I+ +ALD I +  A+++++ + +FE ++G
Sbjct: 253 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302

[Close]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot
Match: P63155 (Crooked neck-like protein 1 OS=Rattus norvegicus OX=10116 GN=Crnkl1 PE=2 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-91
Identity = 164/290 (56.55%), Postives = 215/290 (74.14%), Query Frame = 0


Query: 21  PGASRVKNKTPAPIQITAEQILRESRELQ-EPEFRPPKQKIADPTELSDYRLRKRNEFEH 80
           P  ++VKNK PA +QITAEQ+LRE++E + E    PP+QKI D  EL+DY+LRKR  FE 
Sbjct: 13  PKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFED 72

Query: 81  LLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFIN 140
            +R+ R  IS WI+YA WEES K+  RARS++ER L+VDYRN TLWLKYAE EMKN+ +N
Sbjct: 73  NIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVN 132

Query: 141 PARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFE 200
            ARN+WDRA+T LPRV+Q WYKY +ME+MLGN AGARQ+FERWM W P +QAW SYI FE
Sbjct: 133 HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 192

Query: 201 LRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELPIDDA-E 260
           LR+ E+  AR I+ERFV  HP  + WI++A+FE K+   A AR VYERAVE    +   E
Sbjct: 193 LRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE 252

Query: 261 QLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
            L++AFA+FEE  KE +R R I+ +ALD I +  A+++++ + +FE ++G
Sbjct: 253 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302

[Close]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot
Match: P17886 (Protein crooked neck OS=Drosophila melanogaster OX=7227 GN=crn PE=2 SV=2)

HSP 1 Score: 333.2 bits (853), Expect = 3.2e-90
Identity = 162/290 (55.86%), Postives = 213/290 (73.45%), Query Frame = 0


Query: 21  PGASRVKNKTPAPIQITAEQILRESRELQ-EPEFRPPKQKIADPTELSDYRLRKRNEFEH 80
           P  ++VKNK PA +QITAEQ+LRE++E   E    PPKQKI+DP EL+DY+ RKR  FE 
Sbjct: 8   PKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTFED 67

Query: 81  LLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFIN 140
            LR+ R  +S WI+YA WEE  ++  RARS+WER L+ ++RN TLWLKYAE EMKNK +N
Sbjct: 68  NLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVN 127

Query: 141 PARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFE 200
            ARN+WDRAVT++PRV+Q WYKY +ME+ML N AGARQ+FERWM W P +QAW +Y+ FE
Sbjct: 128 HARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFE 187

Query: 201 LRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELPIDDAEQ 260
           LR+ E+  AR I+ERFV  HP  + WI+FA+FE  +G +  +R V+ERAVE    D  E+
Sbjct: 188 LRYKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEE 247

Query: 261 -LFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
            LFIAFA FEE  KE  RAR I+ +ALDH+P+ R +++++ +   E +YG
Sbjct: 248 RLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYG 297

[Close]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot
Match: Q9BZJ0 (Crooked neck-like protein 1 OS=Homo sapiens OX=9606 GN=CRNKL1 PE=1 SV=4)

HSP 1 Score: 332.4 bits (851), Expect = 5.4e-90
Identity = 167/307 (54.40%), Postives = 220/307 (71.66%), Query Frame = 0


Query: 4   SKDSDPTRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQ-EPEFRPPKQKIAD 63
           S  +D     A   +  P  ++VKNK PA +QITAEQ+LRE++E + E    PP+QKI D
Sbjct: 157 STAADMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITD 216

Query: 64  PTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNH 123
             EL+DY+LRKR  FE  +R+ R  IS WI+YA WEES K+  RARS++ER L+VDYRN 
Sbjct: 217 EEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNI 276

Query: 124 TLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERW 183
           TLWLKYAE EMKN+ +N ARN+WDRA+T LPRV+Q WYKY +ME+MLGN AGARQ+FERW
Sbjct: 277 TLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERW 336

Query: 184 MAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKAR 243
           M W P +QAW SYI FELR+ E+  AR I+ERFV  HP  + WI++A+FE K+   A AR
Sbjct: 337 MEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHAR 396

Query: 244 DVYERAVEELPIDDA-EQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFV 303
            VYERAVE    +   E L++AFA+FEE  KE +R R I+ +ALD I +  A+++++ + 
Sbjct: 397 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYT 456

Query: 304 VFESQYG 309
           +FE ++G
Sbjct: 457 IFEKKFG 463

[Close]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot
Match: Q54XP4 (Crooked neck-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=crnkl1 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.5e-87
Identity = 162/289 (56.06%), Postives = 209/289 (72.32%), Query Frame = 0


Query: 22  GASRVKNKTPAPIQITAEQILRESRELQEP-EFRPPKQKIADPTELSDYRLRKRNEFEHL 81
           G S+VKNK+ AP+QITAEQILR + E Q+     PPKQ I D  EL DYRLRKR ++E L
Sbjct: 8   GVSKVKNKSAAPVQITAEQILRVAHENQQTLPKAPPKQVITDQEELEDYRLRKRQQYESL 67

Query: 82  LRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFINP 141
           L R R   +++I+YA WEES KD  RARSV+ER L++D+R  T+W+KYAE EMKNK IN 
Sbjct: 68  LGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINL 127

Query: 142 ARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFEL 201
           ARN+WDRAV LLPRV QLW+KY  ME MLGN+  AR IFERWM W P  QAW SY+KFE 
Sbjct: 128 ARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQ 187

Query: 202 RHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELPID-DAEQ 261
           R       R IFE+++  HP  + WI++ KFE + G++  AR +++RA+E L  D + EQ
Sbjct: 188 RLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQ 247

Query: 262 LFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
           LFIAFA+FEE+ KE +RAR I+ +A+DH+P+ RA+D++  F  FE Q+G
Sbjct: 248 LFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHG 296

[Close]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL
Match: A0A6J1DG47 (crooked neck-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111020524 PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.3e-142
Identity = 258/314 (82.17%), Postives = 279/314 (88.85%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MSSSKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSSSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQIFERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL
Match: A0A6J1HLN2 (crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464720 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 8.3e-142
Identity = 254/314 (80.89%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MSSSKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSSSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWN+SVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++ KAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEITKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           D+YRKFV FE QYG
Sbjct: 301 DLYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL
Match: A0A6J1FIC9 (crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444391 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 8.3e-142
Identity = 256/314 (81.53%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MS SKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSYSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AKAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL
Match: A0A6J1HYQ8 (crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111469305 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.8e-141
Identity = 253/314 (80.57%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MSSSKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSSSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWN+SVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++ KAR+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ F+LDHIP+GRAE
Sbjct: 241 GEIGKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFSLDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           D+YRKFV FE QYG
Sbjct: 301 DLYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL
Match: A0A6J1I1K2 (crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111468607 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.8e-141
Identity = 255/314 (81.21%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MSSSKDSDP-----TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           MS SKD+DP     TRKDA +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RP
Sbjct: 1   MSYSKDADPTLGYLTRKDA-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           PKQKI DPTEL+DYRLRKR EFE L+RRVRWNISVWI+YA WEES KDF+RARSVWER L
Sbjct: 61  PKQKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERAL 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
           EVDYRNHTLWLKYAE EMKNKFIN ARNVWDRAVTLLPRVDQLWYKYIHME+MLGN AGA
Sbjct: 121 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQ+FERWM WMP+QQ WLSYIKFELR+NE+  AR IFERFVQCHPK   WIRFAKFEMKN
Sbjct: 181 RQVFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRFAKFEMKN 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G++AK+R+VYERAVE+L  D +AEQLF+AFAEFEERCKET+RARCI+ FALDHIP+GRAE
Sbjct: 241 GEVAKSRNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 300

Query: 301 DIYRKFVVFESQYG 309
           DIYRKFV FE QYG
Sbjct: 301 DIYRKFVAFEKQYG 312

[Close]

BLAST of Sed0006165.1 vs. TAIR 10
Match: AT5G41770.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 464.9 bits (1195), Expect = 5.0e-131
Identity = 231/313 (73.80%), Postives = 260/313 (83.07%), Query Frame = 0


Query: 2   SSSKDSD-----PTRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRPP 61
           S  KDSD      TRKD  +VKL P  +RVKNKTPAPIQITAEQILRE+RE QE E RPP
Sbjct: 3   SGGKDSDRTLGYMTRKDT-EVKL-PRPTRVKNKTPAPIQITAEQILREARERQEAEIRPP 62

Query: 62  KQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLE 121
           KQKI D TELSDYRLR+R EFE  +RR RWNI VW++YA WEES KD+ RARSVWER +E
Sbjct: 63  KQKITDSTELSDYRLRRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIE 122

Query: 122 VDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGAR 181
            DYRNHTLWLKYAEFEMKNKF+N ARNVWDRAVTLLPRVDQLWYKYIHME++LGN AGAR
Sbjct: 123 GDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGAR 182

Query: 182 QIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNG 241
           QIFERWM W P+QQ WLS+IKFELR+NE+  AR I+ERFV CHPK   +IR+AKFEMK G
Sbjct: 183 QIFERWMDWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGG 242

Query: 242 DLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAED 301
           ++A+ R VYERA E+L  D +AE LF+AFAEFEERCKE +RAR I+ FALDHIP+GRAED
Sbjct: 243 EVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAED 302

Query: 302 IYRKFVVFESQYG 309
           +YRKFV FE QYG
Sbjct: 303 LYRKFVAFEKQYG 313

[Close]

BLAST of Sed0006165.1 vs. TAIR 10
Match: AT5G45990.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 434.1 bits (1115), Expect = 9.4e-122
Identity = 215/301 (71.43%), Postives = 251/301 (83.39%), Query Frame = 0


Query: 10  TRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRPPKQKIADPTELSDY 69
           T KDA +VKL P  +RVKNKTPAP+QITAEQILRE+RE QE E RPPKQKI D TELSDY
Sbjct: 2   TGKDA-EVKL-PRTTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDY 61

Query: 70  RLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTLEVDYRNHTLWLKYA 129
           RLR+R EFE  +RR RWNI VW++YA WEES  D+ RARSVWER LE +YRNHTLW+KYA
Sbjct: 62  RLRRRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYA 121

Query: 130 EFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQ 189
           EFEMKNKF+N ARNVWDR+VTLLPRVDQLW KYI+ME+ LGN  GARQIFERWM W P+Q
Sbjct: 122 EFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQ 181

Query: 190 QAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAK-ARDVYERA 249
           +AWL +IKFELR+NE+  AR+I+ERFV CHPK   +IR+AKFEMK G   K AR+VYERA
Sbjct: 182 KAWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERA 241

Query: 250 VEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQY 309
           V++L  D +AE LF++FAEFEERCKE +RAR I+ FALDHI +GRAE++Y+KFV FE QY
Sbjct: 242 VDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQY 300

[Close]

BLAST of Sed0006165.1 vs. TAIR 10
Match: AT3G51110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 400.2 bits (1027), Expect = 1.5e-111
Identity = 191/287 (66.55%), Postives = 233/287 (81.18%), Query Frame = 0


Query: 26  VKNKTPAPIQITAEQILRESRELQEPE-FRPPKQKIADPTELSDYRLRKRNEFEHLLRRV 85
           VKNKTPAP+QITAEQ+L+E+RE ++    RPPKQKI D  EL++YRLR+R EFE  +R  
Sbjct: 8   VKNKTPAPVQITAEQVLKEAREREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQIRGA 67

Query: 86  RWNISVWIRYAHWEESHKDFHRARSVWERTLEVD-YRNHTLWLKYAEFEMKNKFINPARN 145
           + N  VW+RYA WEES KD  RARSVWER LE + YRNHTLWLKYAEFEM+NK +N ARN
Sbjct: 68  KTNSQVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARN 127

Query: 146 VWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGARQIFERWMAWMPNQQAWLSYIKFELRHN 205
           VWDRAV +LPRVDQ WYKYIHME++LGN  GAR+IFERWM W P+QQAWL +IKFELR+N
Sbjct: 128 VWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIKFELRYN 187

Query: 206 ELLCARAIFERFVQCHPKPEPWIRFAKFEMKNGDLAKARDVYERAVEELP--IDDAEQLF 265
           E+  +R+I+ERFV CHPK   +IR+AKFEMKN  ++ AR VYERA+E L    ++AE +F
Sbjct: 188 EIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIF 247

Query: 266 IAFAEFEERCKETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
           +AFAEFEE CKE +RAR ++ +ALDHIP+GRAED+Y+KFV FE QYG
Sbjct: 248 VAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYG 294

[Close]

BLAST of Sed0006165.1 vs. TAIR 10
Match: AT3G13210.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 324.7 bits (831), Expect = 8.0e-89
Identity = 180/314 (57.32%), Postives = 215/314 (68.47%), Query Frame = 0


Query: 1   MSSSKDSD-----PTRKDAKKVKLAPGASRVKNKTPAPIQITAEQILRESRELQEPEFRP 60
           M+S KDSD      TRKDA ++KL P  ++VKNKTPAPIQITAEQILRE+RE QE EFRP
Sbjct: 1   MASGKDSDRNLGYMTRKDA-ELKL-PRMTQVKNKTPAPIQITAEQILREARERQEAEFRP 60

Query: 61  PKQKIADPTELSDYRLRKRNEFEHLLRRVRWNISVWIRYAHWEESHKDFHRARSVWERTL 120
           P Q I D  ELSDYRLR+R EFE  +RR R N  VW+                       
Sbjct: 61  PNQTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWV----------------------- 120

Query: 121 EVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLLPRVDQLWYKYIHMEQMLGNFAGA 180
                      KYA+FEMKNK +N ARNVWDRAV+LLPRVDQLWYK+IHME+ LGN AGA
Sbjct: 121 -----------KYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGA 180

Query: 181 RQIFERWMAWMPNQQAWLSYIKFELRHNELLCARAIFERFVQCHPKPEPWIRFAKFEMKN 240
           RQI ERW+   P+QQAWL +IKFEL++NE+ CAR+I+ERFV CHPK   +IR+AKFEMK+
Sbjct: 181 RQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKH 240

Query: 241 GDLAKARDVYERAVEELPID-DAEQLFIAFAEFEERCKETQRARCIFNFALDHIPEGRAE 300
           G +  A  V+ERA +EL  D +AE LF+AFAEFEE+          + FALD IP+GRAE
Sbjct: 241 GQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQ----------YKFALDQIPKGRAE 268

Query: 301 DIYRKFVVFESQYG 309
           ++Y KFV FE Q G
Sbjct: 301 NLYSKFVAFEKQNG 268

[Close]

BLAST of Sed0006165.1 vs. TAIR 10
Match: AT5G28740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13
Identity = 63/277 (22.74%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 47  ELQEPEFRPPKQKIADPTELSDYRLRKR---NEFEHLLRRVRWNISVWIRYAHWEESHKD 106
           EL+   F+   + +   T +    +R+R   +  E +  ++  ++ +W  Y   EES   
Sbjct: 471 ELRHKNFKGALELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGT 530

Query: 107 FHRARSVWERTLEVDYRNHTLWLKYAEFEMKNKFINPARNVWDRAVTLL--PRVDQLWYK 166
               R+V+E+ L++      + + YA    +NK+   A  V++R V +   P V  +W  
Sbjct: 531 LESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 590

Query: 167 YI-HMEQMLG--NFAGARQIFERWMAWMPN---QQAWLSYIKFELRHNELLCARAIFERF 226
           Y+    +  G      AR++FE  ++  P+   +  +L Y K E  +     A  ++E  
Sbjct: 591 YLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEA 650

Query: 227 VQCHPKPEPWIRFAKFEMKNGDL---AKARDVYERAVEE-LPIDDAEQLFIAFAEFEERC 286
            +  P+ +    +  +  +  ++    + R++YE+A+E  LP  D + + I FAE E   
Sbjct: 651 TKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSL 710

Query: 287 KETQRARCIFNFALDHIPEGRAEDIYRKFVVFESQYG 309
            E  RAR ++ ++          + + K+  FE Q+G
Sbjct: 711 GEIDRARALYKYSSQFADPRSDPEFWNKWHEFEVQHG 747

The following BLAST results are available for this feature:

BLAST of Sed0006165.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152908.1	2.6e-142	82.17	crooked neck-like protein 1 [Momordica charantia] >XP_022152909.1 crooked neck-l...	[more]
KAG6586009.1	1.7e-141	81.53	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964730.1	1.7e-141	80.89	crooked neck-like protein 1 [Cucurbita moschata] >XP_022964731.1 crooked neck-li...	[more]
KAG7020791.1	1.7e-141	81.53	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022938253.1	1.7e-141	81.53	crooked neck-like protein 1 [Cucurbita moschata]	[more]

BLAST of Sed0006165.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P63154	3.7e-91	56.55	Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1	[more]
P63155	3.7e-91	56.55	Crooked neck-like protein 1 OS=Rattus norvegicus OX=10116 GN=Crnkl1 PE=2 SV=1	[more]
P17886	3.2e-90	55.86	Protein crooked neck OS=Drosophila melanogaster OX=7227 GN=crn PE=2 SV=2	[more]
Q9BZJ0	5.4e-90	54.40	Crooked neck-like protein 1 OS=Homo sapiens OX=9606 GN=CRNKL1 PE=1 SV=4	[more]
Q54XP4	1.5e-87	56.06	Crooked neck-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=crnkl1 PE=3 ...	[more]

BLAST of Sed0006165.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG47	1.3e-142	82.17	crooked neck-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111020524 PE=4 ...	[more]
A0A6J1HLN2	8.3e-142	80.89	crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464720 PE=4 S...	[more]
A0A6J1FIC9	8.3e-142	81.53	crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444391 PE=4 S...	[more]
A0A6J1HYQ8	1.8e-141	80.57	crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111469305 PE=4 SV=...	[more]
A0A6J1I1K2	1.8e-141	81.21	crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111468607 PE=4 SV=...	[more]

BLAST of Sed0006165.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41770.1	5.0e-131	73.80	crooked neck protein, putative / cell cycle protein, putative	[more]
AT5G45990.1	9.4e-122	71.43	crooked neck protein, putative / cell cycle protein, putative	[more]
AT3G51110.1	1.5e-111	66.55	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13210.1	8.0e-89	57.32	crooked neck protein, putative / cell cycle protein, putative	[more]
AT5G28740.1	1.1e-13	22.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 236..270 e-value: 3.3E-7 score: 39.9 coord: 170..201 e-value: 2.5E-5 score: 33.7 coord: 136..168 e-value: 0.0065 score: 25.7 coord: 203..234 e-value: 0.048 score: 22.8 coord: 68..100 e-value: 0.88 score: 18.6 coord: 102..134 e-value: 8.4E-5 score: 32.0 coord: 272..306 e-value: 24.0 score: 12.6
IPR003107	HAT (Half-A-TPR) repeat	PFAM	PF02184	HAT	coord: 103..132 e-value: 9.9E-5 score: 22.2 coord: 208..232 e-value: 3.8E-8 score: 33.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 121..309 e-value: 6.6E-48 score: 165.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 80..189
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 190..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR11246:SF28	SUBFAMILY NOT NAMED	coord: 21..308
IPR045075	Pre-mRNA-splicing factor Syf1-like	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 21..308
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 222..255 score: 8.1424

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006165	Sed0006165	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006165.1-exon	Sed0006165.1-exon-LG08:28067965..28068894	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006165.1-cds	Sed0006165.1-cds-LG08:28067965..28068894	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006165.1	Sed0006165.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
molecular_function	GO:0005515	protein binding