Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGCTATAAGCAAGCAAGGCGGAAGAAGACTTGATTGGCGGCGAGAAAACTGGGGATTTAGGGAGATAAGGTACATTCACTGTTTTGTTGCTGTATGTAAAGCACTGTTTTGAATGCAAATAATGAATATGAATCAATGGCTTCTTGTATGTTGAAGACAACAACTTCCAGATGTTCATTTGGGTGGAATAAGAATTGGAACTTTGGGAATAAAAACAACAAACAGAGCAAACCCCAAATCAAATACCATCAGGATGTCGATCTTCCATTTCCTCTTTCTCTACTCCACAATACATTCTTGAAAAGTATTTCTTTCTTTTTACTCTTTGAATCCCTATGTTTCACTGTTCTCTTGCTTACTTTTCTCTTTCTACCTTCTAAAATAGTTTGCATAATCTGCTCAGCAATGATTTTTATGTTTTGTTTCTTCTATTATGAACATTTACACTTGGGGATGTGTCAAATCTTTGATTCATGAAGTAACTTGCACAATTACTTCATTTGTTTTTGTTTCCTTCGACTCAGAAATGGTGTGTTTCAAGGTTTCTTTGTTCTATGAAGATTTGTGCCAAATCTGTGGTTCAAGTTGCAGAGTAACTTTAATTAGTTTTTGGGAATTATGAAAAACTCAATGAGCTATTTAATGAGTTTTTTTTTTCTACTTTTCCCTTGCTTGACTATACATATTTCATGTTCAATTCTATTTTATTTGTCTTCTGGTGCATTTTCAATTGCCTTTTGTTTGAATGGTGAAGTTCATATTATGTTGTAGTAAGCTTGATTGTAGTGTTATCTATATTTGCATTGTCAAAACTCAAAATACTTTTCAGGTAAGGAACTTGAATGCTGCTATAAGGCCACTTCGGACGGATTCAGCGCGACCGATTTCCACGCGTGTTGCGATTTCAAAGGACCGTGTGTCATAATTGGCTACACAGACAAATCCTTCAAGTTTGGTGCCTTCAACCCTGAGGGTTATAGAAGCACAGACGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGATCACAATGCGGAAGCTGATCCCATCATCCTTCCTAAGGTTGGGGGTAGCGGTGCAGCGCTGTTCGACTATGCAAGGGGCGGGCCACAGTTCGGGGCGGATGGGCTACTAATCGGCCCCCCTCTGGCACCCGTGATGGGCGGTTTTGCTGGGCCAGACACAAACTCGGGCATCGGAGACTTGAGGCAGGCCAAGTCTCGGCTCGGACTGTCGTATGCCAAGAGGAAAGATAGGAAGGAGTCCATTTTCGGAGATGAAAATAGAGCTGTTGTTGCTGAAGTGCAGGTGTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGAAAGAGAGGGATGAGCAAGTAAGTGCCCAAGCTGATCTGCATTGGATGCTGTTGTGAATTTGAAATGGTAACAGATGAATATTTCTATTGCATACAGCTAGCTGGATTCTATTTTTTTTTTTTTTTATCTAAACTGGATTCTTTATTCTTAATGAATTAATGTTGAAAATTTAAAAGCTTATCAAGAAAATATTTTACC
mRNA sequence
GGGGCTATAAGCAAGCAAGGCGGAAGAAGACTTGATTGGCGGCGAGAAAACTGGGGATTTAGGGAGATAAGGTACATTCACTGTTTTGTTGCTGTATGTAAAGCACTGTTTTGAATGCAAATAATGAATATGAATCAATGGCTTCTTGTATGTTGAAGACAACAACTTCCAGATGTTCATTTGGGTGGAATAAGAATTGGAACTTTGGGAATAAAAACAACAAACAGAGCAAACCCCAAATCAAATACCATCAGGATGTCGATCTTCCATTTCCTCTTTCTCTACTCCACAATACATTCTTGAAAAGTAAGGAACTTGAATGCTGCTATAAGGCCACTTCGGACGGATTCAGCGCGACCGATTTCCACGCGTGTTGCGATTTCAAAGGACCGTGTGTCATAATTGGCTACACAGACAAATCCTTCAAGTTTGGTGCCTTCAACCCTGAGGGTTATAGAAGCACAGACGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGATCACAATGCGGAAGCTGATCCCATCATCCTTCCTAAGGTTGGGGGTAGCGGTGCAGCGCTGTTCGACTATGCAAGGGGCGGGCCACAGTTCGGGGCGGATGGGCTACTAATCGGCCCCCCTCTGGCACCCGTGATGGGCGGTTTTGCTGGGCCAGACACAAACTCGGGCATCGGAGACTTGAGGCAGGCCAAGTCTCGGCTCGGACTGTCGTATGCCAAGAGGAAAGATAGGAAGGAGTCCATTTTCGGAGATGAAAATAGAGCTGTTGTTGCTGAAGTGCAGGTGTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGAAAGAGAGGGATGAGCAAGTAAGTGCCCAAGCTGATCTGCATTGGATGCTGTTGTGAATTTGAAATGGTAACAGATGAATATTTCTATTGCATACAGCTAGCTGGATTCTATTTTTTTTTTTTTTTATCTAAACTGGATTCTTTATTCTTAATGAATTAATGTTGAAAATTTAAAAGCTTATCAAGAAAATATTTTACC
Coding sequence (CDS)
ATGGCTTCTTGTATGTTGAAGACAACAACTTCCAGATGTTCATTTGGGTGGAATAAGAATTGGAACTTTGGGAATAAAAACAACAAACAGAGCAAACCCCAAATCAAATACCATCAGGATGTCGATCTTCCATTTCCTCTTTCTCTACTCCACAATACATTCTTGAAAAGTAAGGAACTTGAATGCTGCTATAAGGCCACTTCGGACGGATTCAGCGCGACCGATTTCCACGCGTGTTGCGATTTCAAAGGACCGTGTGTCATAATTGGCTACACAGACAAATCCTTCAAGTTTGGTGCCTTCAACCCTGAGGGTTATAGAAGCACAGACGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGATCACAATGCGGAAGCTGATCCCATCATCCTTCCTAAGGTTGGGGGTAGCGGTGCAGCGCTGTTCGACTATGCAAGGGGCGGGCCACAGTTCGGGGCGGATGGGCTACTAATCGGCCCCCCTCTGGCACCCGTGATGGGCGGTTTTGCTGGGCCAGACACAAACTCGGGCATCGGAGACTTGAGGCAGGCCAAGTCTCGGCTCGGACTGTCGTATGCCAAGAGGAAAGATAGGAAGGAGTCCATTTTCGGAGATGAAAATAGAGCTGTTGTTGCTGAAGTGCAGGTGTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGA
Protein sequence
MASCMLKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDHNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY
Homology
BLAST of Sed0005643.1 vs. NCBI nr
Match:
XP_023520894.1 (uncharacterized protein LOC111784413 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 204/225 (90.67%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 42 LKTTPS-CSFGW--NWNFGNPNNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 101
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 102 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 161
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 162 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 221
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 222 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 262
BLAST of Sed0005643.1 vs. NCBI nr
Match:
XP_023005957.1 (uncharacterized protein LOC111498814 [Cucurbita maxima])
HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 204/225 (90.67%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 41 LKTTPS-CSFGW--NWNFGNANNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 100
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 101 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 160
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 161 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 220
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 221 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 261
BLAST of Sed0005643.1 vs. NCBI nr
Match:
KAG6596922.1 (MND1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 204/225 (90.67%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 775 LKTTPS-CSFGW--NWNFGNANNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 834
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 835 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 894
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 895 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 954
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 955 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 995
BLAST of Sed0005643.1 vs. NCBI nr
Match:
XP_022947044.1 (uncharacterized protein LOC111451012 [Cucurbita moschata])
HSP 1 Score: 416.4 bits (1069), Expect = 1.6e-112
Identity = 203/225 (90.22%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 52 LKTTPS-CSFGW--NWNFGNANNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 111
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 112 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 171
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 172 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 231
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSP+IASLY
Sbjct: 232 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPRIASLY 272
BLAST of Sed0005643.1 vs. NCBI nr
Match:
XP_004148731.1 (uncharacterized protein LOC101203266 [Cucumis sativus] >KGN55780.1 hypothetical protein Csa_011325 [Cucumis sativus])
HSP 1 Score: 411.0 bits (1055), Expect = 6.8e-111
Identity = 202/236 (85.59%), Postives = 210/236 (88.98%), Query Frame = 0
Query: 1 MASCMLKT------TTSRCSFG-WNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNT 60
MASC+ + TT CSFG W NWNFGN N KQ KPQIKYH D+ LPFPLSLL T
Sbjct: 1 MASCIFNSVFYRLKTTPSCSFGKW--NWNFGNGNKKQDKPQIKYH-DIVLPFPLSLLEKT 60
Query: 61 FLKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
FLK KEL+CCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY
Sbjct: 61 FLKRKELKCCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
Query: 121 DTFDAFLFYWDHNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 180
DTFDAFLFYW N + DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA
Sbjct: 121 DTFDAFLFYWKDNEDDDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 180
Query: 181 GPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
GPDTNSG+GDLRQA+SRLGLSYAKRKD K+SIFGDENRAVVAEVQVFCSPQIASLY
Sbjct: 181 GPDTNSGVGDLRQARSRLGLSYAKRKDGKDSIFGDENRAVVAEVQVFCSPQIASLY 233
BLAST of Sed0005643.1 vs. ExPASy TrEMBL
Match:
A0A6J1KUL2 (uncharacterized protein LOC111498814 OS=Cucurbita maxima OX=3661 GN=LOC111498814 PE=4 SV=1)
HSP 1 Score: 417.9 bits (1073), Expect = 2.7e-113
Identity = 204/225 (90.67%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 41 LKTTPS-CSFGW--NWNFGNANNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 100
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 101 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 160
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 161 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 220
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 221 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 261
BLAST of Sed0005643.1 vs. ExPASy TrEMBL
Match:
A0A6J1G5M9 (uncharacterized protein LOC111451012 OS=Cucurbita moschata OX=3662 GN=LOC111451012 PE=4 SV=1)
HSP 1 Score: 416.4 bits (1069), Expect = 7.8e-113
Identity = 203/225 (90.22%), Postives = 210/225 (93.33%), Query Frame = 0
Query: 6 LKTTTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTFLKSKELECCYK 65
LKTT S CSFGW NWNFGN NNK +KPQIKYH D+DLPFPLSL+ NTFLK KEL+CCYK
Sbjct: 52 LKTTPS-CSFGW--NWNFGNANNKDNKPQIKYH-DIDLPFPLSLVDNTFLKRKELKCCYK 111
Query: 66 ATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWDH 125
ATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+H
Sbjct: 112 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 171
Query: 126 NAEA-DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 185
N A DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 172 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 231
Query: 186 RQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
RQAKSRLGLSYAKRKD K+SIFGD NRAVVAEVQVFCSP+IASLY
Sbjct: 232 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPRIASLY 272
BLAST of Sed0005643.1 vs. ExPASy TrEMBL
Match:
A0A0A0L1B1 (TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011810 PE=4 SV=1)
HSP 1 Score: 411.0 bits (1055), Expect = 3.3e-111
Identity = 202/236 (85.59%), Postives = 210/236 (88.98%), Query Frame = 0
Query: 1 MASCMLKT------TTSRCSFG-WNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNT 60
MASC+ + TT CSFG W NWNFGN N KQ KPQIKYH D+ LPFPLSLL T
Sbjct: 1 MASCIFNSVFYRLKTTPSCSFGKW--NWNFGNGNKKQDKPQIKYH-DIVLPFPLSLLEKT 60
Query: 61 FLKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
FLK KEL+CCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY
Sbjct: 61 FLKRKELKCCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
Query: 121 DTFDAFLFYWDHNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 180
DTFDAFLFYW N + DPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA
Sbjct: 121 DTFDAFLFYWKDNEDDDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 180
Query: 181 GPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
GPDTNSG+GDLRQA+SRLGLSYAKRKD K+SIFGDENRAVVAEVQVFCSPQIASLY
Sbjct: 181 GPDTNSGVGDLRQARSRLGLSYAKRKDGKDSIFGDENRAVVAEVQVFCSPQIASLY 233
BLAST of Sed0005643.1 vs. ExPASy TrEMBL
Match:
A0A1S3BKB8 (uncharacterized protein LOC103490798 OS=Cucumis melo OX=3656 GN=LOC103490798 PE=4 SV=1)
HSP 1 Score: 404.8 bits (1039), Expect = 2.3e-109
Identity = 200/237 (84.39%), Postives = 211/237 (89.03%), Query Frame = 0
Query: 1 MASCMLKT------TTSRCSFG-WNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNT 60
MASC+ + TT CSFG W NWNFG+ N KQ KPQIKYH D+ LPFP+SLL T
Sbjct: 1 MASCIFNSVFYRLKTTPSCSFGKW--NWNFGDGNKKQDKPQIKYH-DIVLPFPVSLLDKT 60
Query: 61 FLKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
FLK KEL+CCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY
Sbjct: 61 FLKRKELKCCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYY 120
Query: 121 DTFDAFLFYW-DHNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGF 180
DTFDAFLFYW D+ ADPI+LPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGF
Sbjct: 121 DTFDAFLFYWKDNEDNADPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGF 180
Query: 181 AGPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
AGPDTNSG+GDLRQA+SRLGLSYAKRKD K+SIFGDENRAVVAEVQVFCSPQIASLY
Sbjct: 181 AGPDTNSGVGDLRQARSRLGLSYAKRKDGKDSIFGDENRAVVAEVQVFCSPQIASLY 234
BLAST of Sed0005643.1 vs. ExPASy TrEMBL
Match:
A0A6J1CU04 (LOW QUALITY PROTEIN: uncharacterized protein LOC111014765 OS=Momordica charantia OX=3673 GN=LOC111014765 PE=4 SV=1)
HSP 1 Score: 394.0 bits (1011), Expect = 4.1e-106
Identity = 194/236 (82.20%), Postives = 205/236 (86.86%), Query Frame = 0
Query: 1 MASCMLKT------TTSRCSFGWNKNWNFGNKNNKQSKPQIKYHQDVDLPFPLSLLHNTF 60
MASC+ + T SFGW NW+FGN + K+ KP IKYHQ +DLPFP SL+ TF
Sbjct: 1 MASCIFNSLFYRLKTIPTSSFGW--NWSFGNGSKKEDKPNIKYHQ-IDLPFPPSLVDKTF 60
Query: 61 LKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYD 120
LK +EL+CCYKATSDGFSATDFH CCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYD
Sbjct: 61 LKGRELKCCYKATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYD 120
Query: 121 TFDAFLFYWD-HNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA 180
TFDAFLFYW+ N ADPIILPKVGGSGAALFDYARGGPQFGADGLLI PPLAPVMGGFA
Sbjct: 121 TFDAFLFYWELDNEAADPIILPKVGGSGAALFDYARGGPQFGADGLLIXPPLAPVMGGFA 180
Query: 181 GPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
GPDTNSG+GDLRQAKSRLGLSYAKRKD KESIFGDE RAVVAEVQVFCSPQIASLY
Sbjct: 181 GPDTNSGVGDLRQAKSRLGLSYAKRKDGKESIFGDEGRAVVAEVQVFCSPQIASLY 233
BLAST of Sed0005643.1 vs. TAIR 10
Match:
AT1G32520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). )
HSP 1 Score: 331.6 bits (849), Expect = 4.9e-91
Identity = 168/240 (70.00%), Postives = 188/240 (78.33%), Query Frame = 0
Query: 1 MASCMLKTTTSRCSFGWNK---------NWNFGNK-NNKQSKPQIKYHQDVDLPFPLSLL 60
MASC + + +F K WN G K +N + Q YH DV++PF LS++
Sbjct: 1 MASCAISNSFHTVTFKTLKRISPYNSLFGWNSGKKIDNIRPPQQPAYHDDVEIPFSLSMV 60
Query: 61 HNTFLKSKELECCYKATSDGFSATDFHACCDFKGPCVIIGYT-DKSFKFGAFNPEGYRST 120
+ TFLK +EL+CCYKA+ DGF AT FH CDFKGPCVII YT DKSFKFG F+PEGYRST
Sbjct: 61 NKTFLKGRELKCCYKASIDGFGATKFHERCDFKGPCVIIAYTKDKSFKFGGFSPEGYRST 120
Query: 121 DDYYDTFDAFLFYWDHNAEADPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM 180
DDYYDTFDAFLFYW + + DPI+LPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM
Sbjct: 121 DDYYDTFDAFLFYWLEDCD-DPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM 180
Query: 181 GGFAGPDTNSGIGDLRQAKSRLGLSYAKRKDRKESIFGDENRAVVAEVQVFCSPQIASLY 230
GGFAGPDTNSGIGDLR AKSRLGLSYAKRKD KESIFGDEN+ + +V VFCSP IASLY
Sbjct: 181 GGFAGPDTNSGIGDLRVAKSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 239
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023520894.1 | 5.5e-113 | 90.67 | uncharacterized protein LOC111784413 [Cucurbita pepo subsp. pepo] | [more] |
| XP_023005957.1 | 5.5e-113 | 90.67 | uncharacterized protein LOC111498814 [Cucurbita maxima] | [more] |
| KAG6596922.1 | 5.5e-113 | 90.67 | MND1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_022947044.1 | 1.6e-112 | 90.22 | uncharacterized protein LOC111451012 [Cucurbita moschata] | [more] |
| XP_004148731.1 | 6.8e-111 | 85.59 | uncharacterized protein LOC101203266 [Cucumis sativus] >KGN55780.1 hypothetical ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1KUL2 | 2.7e-113 | 90.67 | uncharacterized protein LOC111498814 OS=Cucurbita maxima OX=3661 GN=LOC111498814... | [more] |
| A0A6J1G5M9 | 7.8e-113 | 90.22 | uncharacterized protein LOC111451012 OS=Cucurbita moschata OX=3662 GN=LOC1114510... | [more] |
| A0A0A0L1B1 | 3.3e-111 | 85.59 | TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011810 PE=4 S... | [more] |
| A0A1S3BKB8 | 2.3e-109 | 84.39 | uncharacterized protein LOC103490798 OS=Cucumis melo OX=3656 GN=LOC103490798 PE=... | [more] |
| A0A6J1CU04 | 4.1e-106 | 82.20 | LOW QUALITY PROTEIN: uncharacterized protein LOC111014765 OS=Momordica charantia... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G32520.1 | 4.9e-91 | 70.00 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Sed0005643 | Sed0005643 | gene |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sed0005643.1-five_prime_utr | Sed0005643.1-five_prime_utr-LG02:26312593..26312729 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sed0005643.1-exon | Sed0005643.1-exon-LG02:26312593..26312898 | exon |
| Sed0005643.1-exon | Sed0005643.1-exon-LG02:26313424..26314142 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sed0005643.1-cds | Sed0005643.1-cds-LG02:26312730..26312898 | CDS |
| Sed0005643.1-cds | Sed0005643.1-cds-LG02:26313424..26313944 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sed0005643.1-three_prime_utr | Sed0005643.1-three_prime_utr-LG02:26313945..26314142 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sed0005643.1 | Sed0005643.1-protein | polypeptide |
