![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Sed0005439.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACATATCTCATCTCCTCCGAACATTTCTTCATTACTTCCGAACCATTCAATTCATGAATCATCAATTTTCTCTGTATTATTTTCCCGAGAAACAAACAGTTTCTCTCTTCATTCAATCATTAATCCCATGGCTGCACTCGCGAGCTCTGTTCTTCCATCTCCACTCCAGATCCGTCTCGCCGATCCTTCTTCTGGGTTTCTTTCTCCGCCCACAATTCATCGGATTTCACCCAATTTCAACCTCAACTCTTCCCGTCGGCGGTCCCTGTTTTCCGGCGACGGCCGACCCAGAACAGGTTTCTCTTTAAACTCAGTTTCCGACGGTGTTTACTCGGACCCTTCGTCGGTGAACTTTGACCTCGTTGCATCCTTGAAGGTCAAGCTTCTGGTGGGTCTCTTATTTCATGAATCATTATGCTACTGTATTTCCAGATTTGTTTGGTTTTGCTGTTTATCTGTCTTAAGCCCATCAATCCTCTGTTTCAATGGATTGATTGAAAGTGGGTGTTAAGAATAGATGTAGAAGACTAAATGTTATGAAATCAGAAAAAGACAATCAACGAAAATGGTTAAGAAAACGTGAATCACTGACCATTAAAACCATGATTAGAGAAAAAGAAGTGTTTATTAACTCGGAGATACAGGATTATACATACAAGATTACAAAATGTCTGTGAGTTTTCACTGAGTTTATATAGTATTTCGTCTAGGTTTCCGAGGCGTTGGTCCTAGACCCCCACTGGGAAGCTCGCTCGTAAACCCCGACTCGCTGACCAGGTAGCTAGGGCTCCCCACTAAGTAATTGTGGGGTATCTCAGATTGCAAGGCATATCTCAACATTGAATATATCCCAAGTTATGGGCTGCTTTATCCCCAAGGGGTGACACAGTGGTTGAAGGCTTGGGCTTTGAGGGTATGCTCCGCTCAAGGTCTCAGGTTCGATGTCTTCCGGTGCCTGGCCTAAGGACGGGCGTGTTTACCCTAGTTTCAAAAAAGTTATGAGCTGCTTTTTTTTCTGTTTTTTTAGTATAGTAGCAACTTAATGTGTGATCAAAACGCAGGAGGTTGTGTTAAATTGATCATCCATGTGCTTTAAGATTTTGGGTTTAGCGATTTACCAGTGGGTGCAGCTTGTTTTAGTCCATAGTTTTAATCCTTTTTGTTCTTATTCACATTGGATTAGTTAGTAACAACCAACTTTTACCTATCTCAATATTGAGTATGATATTTATCCATTTTGGATACGTTCGTGAGTATCTCGGTAGCTTACACACAATTCAATTATATTCTCACGGAACAATCGCTTGACACTACAATATATTATTGGCAAGGAATGTTGCATCAAAATAATTTATAGGTAGGACTGGCATGGTTTCCCTGGTTATAGTGGAGCGAAGCTACAATTTCCTAGCTTCTAAAAATAAATTAATTTATAGGTAGGTTGTCATTATAAATTTAACTCATAATCTATTAGTTCACCAACACATGGGTGTATGCTCTCATGTCTTTGTTTTTTGTTTCACCCAATATATTGCCCATCACTTTTGAGTCTATGATGTTTCTCTTATCTAGTCAACGCGTGACTTCGGTCTCACTCACAATAGAGTTCTGGTAATCTTTTCTAAGAAATTAGGAATAGTTGAAAGTAGCTCTGAATTGAGATGAATGAAGTTGTAACGTCACAATAGAGATTTATGCCTGTTACGTATGGGATGATTTGTGTTTCTGTTTTAGTAATGCTTGTTCTTTGCTTTCTCTAGAGTGCGGTTTCGGGGTTAAATAGAGGTCTTGCTGCAAGCGAGGATGATTTACAGAAGGTAGAGGACGCTGCCAAAGAGATCGAAGCTGTTGGAGGGCCTGTAGACATCTCTGTTGATCTTGACAAATTGCAAGGACGATGGAAACTGATATACAGCAGTGCATTCTCATCTCGTACTCTAGGTGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCCATTACTCTTGGTCAGGTGCAGCATTTCTCAATTCTATTATTGTTGGTCGTTTCTCAGCTATATCTCTATTTTAGAACCAGACACGAGAGTTTCTTCTTCTTGTTCAATTCGCAAGCAAAATGACTAACGAAACGTCTTTGAGCACAATGTTCATTATTCTTCATGCTTACTTTTCAAATTTCCATCATTAGGTTTTTCAACGGATCGATGTCATTAGCAAAGATTTCGATAACATCGTAGAGCTTGAGTTAGGTGCTCCTTGGCCTCTACCTCCTGCTGAAGTCACTGCTACATTGGCTCACAAGTTTGAAATCATAGGTAGGTTCTCTTTGTATAATGTTTCAATTATGGGGCCATTGCAATGCAGCATACCTTTCTAAACCAAAATAATGCTTCTGTTGTCTGCTTTGTACTGAGATCAGGGTCTGCTAAGATTAAGATTACTTTTGAGAAAACAACCGTGAAAGCAACAGGGAACTTGTCACAGCTTCCACCATTCGAGGTACCTCGGATTCCAGATGCGCTAAGGCCCCCGTCCAACACTGGAAGTGGTGACTTTGAAGTCACTTACCTTGACAACGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGGGTGTTTGTTATCTCATAATACAATCACAGACATGATGGATTTCCTTTGCTGCATCCTCAAGTTCAAACATCTCCCGACGGAGTCGAAGTTTTATAATCCACCATCATTTATTATTATTAGTTTTCTTATTGATTCTTGTATACGAACTTCAACTTAGAGATCAACTGCTAAAGCCATAGTGAGGAAGAGGTAAGTATGAAGTCTCTGGATTTCTACATTAATTGTTTACTGTAAGTAGTTTCATTGCCTTGATCGATGTATTCAGTCTGCTTAAAGTGCTTTTTGAACACCAAAAGCTTTCTATGATATCCTTGTTAGCTTACATGAATGGAACACTGATTTAAGAGAGAAAGTTGGAGATTTGTAACATATATTACTGGATTTTTACAATTAGTTAGAGAGTTAGTTACCTATTATAATAGGTAGTGATGAATTATCTTGGAATTGAGGGAGGGAG ACATATCTCATCTCCTCCGAACATTTCTTCATTACTTCCGAACCATTCAATTCATGAATCATCAATTTTCTCTGTATTATTTTCCCGAGAAACAAACAGTTTCTCTCTTCATTCAATCATTAATCCCATGGCTGCACTCGCGAGCTCTGTTCTTCCATCTCCACTCCAGATCCGTCTCGCCGATCCTTCTTCTGGGTTTCTTTCTCCGCCCACAATTCATCGGATTTCACCCAATTTCAACCTCAACTCTTCCCGTCGGCGGTCCCTGTTTTCCGGCGACGGCCGACCCAGAACAGGTTTCTCTTTAAACTCAGTTTCCGACGGTGTTTACTCGGACCCTTCGTCGGTGAACTTTGACCTCGTTGCATCCTTGAAGGTCAAGCTTCTGAGTGCGGTTTCGGGGTTAAATAGAGGTCTTGCTGCAAGCGAGGATGATTTACAGAAGGTAGAGGACGCTGCCAAAGAGATCGAAGCTGTTGGAGGGCCTGTAGACATCTCTGTTGATCTTGACAAATTGCAAGGACGATGGAAACTGATATACAGCAGTGCATTCTCATCTCGTACTCTAGGTGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCCATTACTCTTGGTCAGGTTTTTCAACGGATCGATGTCATTAGCAAAGATTTCGATAACATCGTAGAGCTTGAGTTAGGTGCTCCTTGGCCTCTACCTCCTGCTGAAGTCACTGCTACATTGGCTCACAAGTTTGAAATCATAGGGTCTGCTAAGATTAAGATTACTTTTGAGAAAACAACCGTGAAAGCAACAGGGAACTTGTCACAGCTTCCACCATTCGAGGTACCTCGGATTCCAGATGCGCTAAGGCCCCCGTCCAACACTGGAAGTGGTGACTTTGAAGTCACTTACCTTGACAACGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGGGTGTTTGTTATCTCATAATACAATCACAGACATGATGGATTTCCTTTGCTGCATCCTCAAGTTCAAACATCTCCCGACGGAGTCGAAGTTTTATAATCCACCATCATTTATTATTATTAGTTTTCTTATTGATTCTTGTATACGAACTTCAACTTAGAGATCAACTGCTAAAGCCATAGTGAGGAAGAGGTAAGTATGAAGTCTCTGGATTTCTACATTAATTGTTTACTGTAAGTAGTTTCATTGCCTTGATCGATGTATTCAGTCTGCTTAAAGTGCTTTTTGAACACCAAAAGCTTTCTATGATATCCTTGTTAGCTTACATGAATGGAACACTGATTTAAGAGAGAAAGTTGGAGATTTGTAACATATATTACTGGATTTTTACAATTAGTTAGAGAGTTAGTTACCTATTATAATAGGTAGTGATGAATTATCTTGGAATTGAGGGAGGGAG ATGGCTGCACTCGCGAGCTCTGTTCTTCCATCTCCACTCCAGATCCGTCTCGCCGATCCTTCTTCTGGGTTTCTTTCTCCGCCCACAATTCATCGGATTTCACCCAATTTCAACCTCAACTCTTCCCGTCGGCGGTCCCTGTTTTCCGGCGACGGCCGACCCAGAACAGGTTTCTCTTTAAACTCAGTTTCCGACGGTGTTTACTCGGACCCTTCGTCGGTGAACTTTGACCTCGTTGCATCCTTGAAGGTCAAGCTTCTGAGTGCGGTTTCGGGGTTAAATAGAGGTCTTGCTGCAAGCGAGGATGATTTACAGAAGGTAGAGGACGCTGCCAAAGAGATCGAAGCTGTTGGAGGGCCTGTAGACATCTCTGTTGATCTTGACAAATTGCAAGGACGATGGAAACTGATATACAGCAGTGCATTCTCATCTCGTACTCTAGGTGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCCATTACTCTTGGTCAGGTTTTTCAACGGATCGATGTCATTAGCAAAGATTTCGATAACATCGTAGAGCTTGAGTTAGGTGCTCCTTGGCCTCTACCTCCTGCTGAAGTCACTGCTACATTGGCTCACAAGTTTGAAATCATAGGGTCTGCTAAGATTAAGATTACTTTTGAGAAAACAACCGTGAAAGCAACAGGGAACTTGTCACAGCTTCCACCATTCGAGGTACCTCGGATTCCAGATGCGCTAAGGCCCCCGTCCAACACTGGAAGTGGTGACTTTGAAGTCACTTACCTTGACAACGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGGGTGTTTGTTATCTCATAA MAALASSVLPSPLQIRLADPSSGFLSPPTIHRISPNFNLNSSRRRSLFSGDGRPRTGFSLNSVSDGVYSDPSSVNFDLVASLKVKLLSAVSGLNRGLAASEDDLQKVEDAAKEIEAVGGPVDISVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKITFEKTTVKATGNLSQLPPFEVPRIPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS Homology
BLAST of Sed0005439.1 vs. NCBI nr
Match: XP_008438497.1 (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo]) HSP 1 Score: 460.7 bits (1184), Expect = 9.1e-126 Identity = 241/288 (83.68%), Postives = 253/288 (87.85%), Query Frame = 0
BLAST of Sed0005439.1 vs. NCBI nr
Match: XP_038899987.1 (plastid-lipid-associated protein 6, chloroplastic [Benincasa hispida]) HSP 1 Score: 459.5 bits (1181), Expect = 2.0e-125 Identity = 239/289 (82.70%), Postives = 253/289 (87.54%), Query Frame = 0
BLAST of Sed0005439.1 vs. NCBI nr
Match: KAA0049234.1 (putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa] >TYK17324.1 putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa]) HSP 1 Score: 457.2 bits (1175), Expect = 1.0e-124 Identity = 240/288 (83.33%), Postives = 252/288 (87.50%), Query Frame = 0
BLAST of Sed0005439.1 vs. NCBI nr
Match: XP_022146842.1 (plastid-lipid-associated protein 6, chloroplastic [Momordica charantia]) HSP 1 Score: 455.7 bits (1171), Expect = 2.9e-124 Identity = 235/289 (81.31%), Postives = 251/289 (86.85%), Query Frame = 0
BLAST of Sed0005439.1 vs. NCBI nr
Match: XP_022947374.1 (plastid-lipid-associated protein 6, chloroplastic [Cucurbita moschata]) HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122 Identity = 237/282 (84.04%), Postives = 248/282 (87.94%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy Swiss-Prot
Match: Q9LW57 (Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP6 PE=1 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 1.9e-89 Identity = 178/281 (63.35%), Postives = 211/281 (75.09%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy Swiss-Prot
Match: Q5M755 (Fibrillin-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FBN5 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 8.5e-10 Identity = 61/244 (25.00%), Postives = 110/244 (45.08%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy Swiss-Prot
Match: Q9LU85 (Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP4 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08 Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy Swiss-Prot
Match: Q8W4F1 (Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP10 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 8.8e-07 Identity = 57/216 (26.39%), Postives = 85/216 (39.35%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy Swiss-Prot
Match: B2LU34 (Chromoplast-specific carotenoid-associated protein C1, chromoplastic OS=Oncidium hybrid cultivar OX=141207 GN=CHRC1 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06 Identity = 78/315 (24.76%), Postives = 126/315 (40.00%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy TrEMBL
Match: A0A1S3AX61 (probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483576 PE=3 SV=1) HSP 1 Score: 460.7 bits (1184), Expect = 4.4e-126 Identity = 241/288 (83.68%), Postives = 253/288 (87.85%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy TrEMBL
Match: A0A5D3D241 (Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001790 PE=3 SV=1) HSP 1 Score: 457.2 bits (1175), Expect = 4.9e-125 Identity = 240/288 (83.33%), Postives = 252/288 (87.50%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy TrEMBL
Match: A0A6J1D0Q0 (plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015945 PE=3 SV=1) HSP 1 Score: 455.7 bits (1171), Expect = 1.4e-124 Identity = 235/289 (81.31%), Postives = 251/289 (86.85%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy TrEMBL
Match: A0A6J1G6L7 (plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451256 PE=3 SV=1) HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122 Identity = 237/282 (84.04%), Postives = 248/282 (87.94%), Query Frame = 0
BLAST of Sed0005439.1 vs. ExPASy TrEMBL
Match: A0A0A0L4C7 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134880 PE=3 SV=1) HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122 Identity = 236/289 (81.66%), Postives = 251/289 (86.85%), Query Frame = 0
BLAST of Sed0005439.1 vs. TAIR 10
Match: AT3G23400.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 330.5 bits (846), Expect = 1.3e-90 Identity = 178/281 (63.35%), Postives = 211/281 (75.09%), Query Frame = 0
BLAST of Sed0005439.1 vs. TAIR 10
Match: AT5G09820.2 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 65.9 bits (159), Expect = 6.1e-11 Identity = 61/244 (25.00%), Postives = 110/244 (45.08%), Query Frame = 0
BLAST of Sed0005439.1 vs. TAIR 10
Match: AT3G26070.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09 Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = 0
BLAST of Sed0005439.1 vs. TAIR 10
Match: AT5G09820.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 56.6 bits (135), Expect = 3.7e-08 Identity = 47/189 (24.87%), Postives = 87/189 (46.03%), Query Frame = 0
BLAST of Sed0005439.1 vs. TAIR 10
Match: AT2G46910.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 55.8 bits (133), Expect = 6.3e-08 Identity = 57/216 (26.39%), Postives = 85/216 (39.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|