Sed0005274.1 (mRNA) Chayote v1

Overview


Name	Sed0005274.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	AvrRpt-cleavage domain-containing protein
Location	LG07: 42638882 .. 42642092 (-)
Sequence length	342
RNA-Seq Expression	Sed0005274.1
Synteny	Sed0005274.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTATGTCATCCTTCGATTTCTTGTTTTTGGATTTTTTTTTTTTTTTTTTAAATTTTCGATTTGATGTGCTTCTCGATCGGCTTGTGTTCAATTTCCGTTTTCTTGATTCGATTCGCCATTTTGATTCATCATTTGTTCAATTCTGCGCTTCTGTGGTTTCTACTTTGATTTGTTTGTTGTTCTTACGATGCTGAAGCTGATCGATTTTGTTCTGGTTATATCGAGGCAAAAATCTGGATTTTCTGCTAGGTTTTAATTCATTCGATTAATGGCTGTTGAGGAAACTCTTTAATTGATCTGTTATGTTTGATTGATTATCGTATTTATAAAATCTGTAGTTAGAAAAGCAATGTTAGAGATTGTGGATGTTAGATTCATAGGGAGATTGGTACTGAAAACTACCAGATTTCTGCTTAGTTGGAGGAAACTCTTTAATTGATCTGTTTGTTTATTGTTTGATTGATTCTCGTATTTATGAAATCTGTAGTTATAAAAATTAAAAGCAATGTTAGAGATGATGGATGTCAGATTCATAGGGAGATTGGTAATGAAAACTACCAGGTTTTCTGCTAGGTTTTAATTCATTCTATTAACATCTGTTGGAGGAAACTCTTTAATTGATCTATTTTTTTTTTATTTTGTTTGATTGATTATCGTATTTATAAAATCGGTAGTTATAAAAGCAATGTTAGAGATGATGGATGTTAGATTCATAGGGCGGTTGGTCCCCAAAGGTTAGCACAGTGGTTGAAGACTTGGGCTTTGAGGGTATGCTCCCCTCAAGATCCTAAGTTTGAAACTCACCTGTGACATTACTCCTTCTATGTCTCCGGTGCCTGACCTAGGGACGAGCGTGGTTACCTTATTTCAAAAAAAAAAATATTCATAGGGCGGTTGGTAATGAAAACTACCAGGTTTTTTGCTAGGTTTTGATTCATTCGATTAACACCTGTTGGAGGAAACTCTATAATAGATCTTTTTTGTTTTGTTTTGTTTTATTTGATTGATTCTTGTATTTATAAAATTTGTAGTTATAAAAGCAATGTCAGAGATGATAGATGTTAGATTCATAGGGTGATTGGTAATGAAAGCTACCAGATTCATTTAGGCTTTTCTCTCTTATTGTAGGACAAAGGTCGGCCATTACCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAAGTTGATTCACCAGGAAAACTTGATGCACAGGCAAGGTCTGGACCAGATCCTGCCAAGGCACCGCCTGTAAGATATCATCCTTAATCAACCCTTTTCAATTTTTATTGTTGGATGGTTGCCTTTTTAGCTAACATGTCTGTTGATAGTATTAAATAATTGGCATCTAAACCACGATGGGGAGCCTAGTGGTTATAATGATATTAAGAAATCAAAATGTTGTAAGTTCAATCCATAGTGGCCACCTATTTAGGAATTAATTTTCTACGGATTTCCTTGACATCCAAATATTGTAGGGTTAAGCGGTATATCTGATAAAGATAGTCGAGGTGCATGCAAGTTGGCTTGGACACTCACAAATATATATATATATATATATATATAAATTTGTACCTGTGGGACAATTGTTTGGTTCATTAGTGTCAATGAATTTTTGAGTGCATTGTTTTTTACAAGTGTGAGTGTGCATGCCTATGTATGTACATATATGTGCATTGATGCTTGTTCATCTATTGGGAAATAATTTCATATGGAATCGAACATGTGGGTAAAGTACCAAGAATCTAGCTGGTTAAATTACAAATTTGGTCTTTATGGATTGGAGCAAGTTAGAATTGAATCCATATAGTTTTAGAAGTTAAAATTTGGTCCATATGTTTGATAAATCTTTAAAAAATAGTCTTTGTTGCTTGTAGTCTCTAGTGAATCGTGGCAAATAACTAACCATATGTAAATGAGGTGGTAGGGGTGATTTCGGTTCGGTTTTTGTCGGTTTTGTACCAAACCGACAACCGAACCAATATCTTCGGTTTTCAAAAAATGGATCCGATCCAATGTCCAATAAAGTATAGAACCATTGGTTCGGTTTTTCAATGTCCAAAAATGGATCCGATCCGATCCAATGTCCAATTTTTTTTAATATATCAAAAATAATATTTCTCATATAAAAATAACATTCTCGTAAACAACTATTTTTTTAAAGGTTAGAAGTATTTTTAACTTATTTAAAATTATTTAAGGATATTTTTTACTTGAAATAGGGGTGAATTAAAGAAATATTAATGGAAAGAAGATTACTCTATATGAATTATTGACTATATATATATATCGGTTTGGATCGGTTTTTTAAAATGAAAACCGGAACCGATCCAATATTTTCGGTTTTTTCAAATTACAAACCGATATGTCCAATTTTGAGGTAAAAAACCGATCCGATCCATTGGTTCGGTTCGGTTCGGTTTTTCGGTTTTTTGTTGCACCCCTATGAGGTGGTCTTTTGTATTTTATGGATGGTGTGGATTAAATAATTGATTGGATGAAGATCGAGATGCCGATTTCCAAAGAAGTTGCATTAAATTGCTAATTTCCAACCATTTTTTTTTATGTAATCACCTTCGTAACCTATATCGTCTTCATTGACACATGACTGATTAATTGCCACGTTCTTAATTTGCCCGTCATTACAATGATATTGACTATTTTTGAGGTTTTATCAAATCATAGGGACTAAATTTTAACTTTTAAAACTATGGGATTAAATTCTAATTTTCTGTTAGCCATAGGGAAAAAAATTGTAATTTATTTAACCAATTTAGTTTTTAGGAGAGACTATATAACATCATTTAATGTAATAAAATTAGTATCTGTTTGATTTAATATGCATTGTTAGGAACTCTGTGTTCATGAAACATGAGTTGTTTTCTAGTTTTAATCATCTTTGAGGGGTATCTGGTTCTTATTGCATAAATGTAGTCCTTTGAACGTAACAACTTGATTCGTTAGCCGGTGCTGCATTCACTCTTTGTTGTTTACTACTTGTATAAAATGAATAATCTGCATTTTTTCCTTGCATATTGTATTTACAAATTTTCTATGGTCTTTTTTCCTCATGTGGATGATTATCAGAAGAAATGGCTTTGCTGTATCCAAAGTCCTCCTGCTGAATCTTGAGAAGGTTCATTAA

mRNA sequence

ATGACGGACAAAGGTCGGCCATTACCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAAGTTGATTCACCAGGAAAACTTGATGCACAGGCAAGGTCTGGACCAGATCCTGCCAAGGCACCGCCTCTAACATGTCTGTTGATAGTATTAAATAATTGGCATCTAAACCACGATGGGGAGCCTAGTGGTTATAATGATATTAAGAAATCAAAATGTTGTAAAAGAAATGGCTTTGCTGTATCCAAAGTCCTCCTGCTGAATCTTGAGAAGGTTCATTAA

Coding sequence (CDS)

ATGACGGACAAAGGTCGGCCATTACCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAAGTTGATTCACCAGGAAAACTTGATGCACAGGCAAGGTCTGGACCAGATCCTGCCAAGGCACCGCCTCTAACATGTCTGTTGATAGTATTAAATAATTGGCATCTAAACCACGATGGGGAGCCTAGTGGTTATAATGATATTAAGAAATCAAAATGTTGTAAAAGAAATGGCTTTGCTGTATCCAAAGTCCTCCTGCTGAATCTTGAGAAGGTTCATTAA

Protein sequence

MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAVSKVLLLNLEKVH

Homology

[Close]

BLAST of Sed0005274.1 vs. NCBI nr
Match: KAE8645904.1 (hypothetical protein Csa_011859 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-29
Identity = 74/111 (66.67%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAP 62
           DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK P
Sbjct: 2   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 61

Query: 63  P-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAVSKVLLLNLEKV 113
           P  TC  + L NW          +  +  S    RNGFAV KV LLNL+KV
Sbjct: 62  PNATC--VPLGNW----------FCLLLASDSVIRNGFAVFKVPLLNLKKV 100

[Close]

BLAST of Sed0005274.1 vs. NCBI nr
Match: KAG7030269.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APPL 65
          APP+
Sbjct: 61 APPV 64

[Close]

BLAST of Sed0005274.1 vs. NCBI nr
Match: XP_008463014.1 (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPLTCLLIVLNNWHLN 78
          APP+  +  +   W L+
Sbjct: 61 APPVRYIHNLFPIWALD 77

[Close]

BLAST of Sed0005274.1 vs. NCBI nr
Match: XP_022975420.1 (uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 9.6e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of Sed0005274.1 vs. NCBI nr
Match: XP_023535777.1 (uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 9.6e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of Sed0005274.1 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-20
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDP 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 AKAPP 64
          +K  P
Sbjct: 61 SKPQP 65

[Close]

BLAST of Sed0005274.1 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK 48
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G  V    +
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSR 187

[Close]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL
Match: A0A0A0K6Y6 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G127370 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 76/113 (67.26%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
           MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK
Sbjct: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61  APP-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAVSKVLLLNLEKV 113
            PP  TC  + L NW          +  +  S    RNGFAV KV LLNL+KV
Sbjct: 61  TPPNATC--VPLGNW----------FCLLLASDSVIRNGFAVFKVPLLNLKKV 101

[Close]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL
Match: A0A1S3CI83 (RPM1-interacting protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501257 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPLTCLLIVLNNWHLN 78
          APP+  +  +   W L+
Sbjct: 61 APPVRYIHNLFPIWALD 77

[Close]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL
Match: A0A6J1ID15 (uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL
Match: A0A6J1IGN4 (uncharacterized protein LOC111474733 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL
Match: A0A6J1FE40 (uncharacterized protein LOC111443250 OS=Cucurbita moschata OX=3662 GN=LOC111443250 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of Sed0005274.1 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-21
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDP 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 AKAPPL 65
          +K  P+
Sbjct: 61 SKPQPV 66

[Close]

BLAST of Sed0005274.1 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-20
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAK 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 APPL 65
            P+
Sbjct: 79 PQPV 82

[Close]

BLAST of Sed0005274.1 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAK 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 APP 64
            P
Sbjct: 79 PQP 81

[Close]

BLAST of Sed0005274.1 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK 48
          M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of Sed0005274.1 vs. TAIR 10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-12
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 6  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK 61
          RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT     +  +     +S  +P K
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPTK 67

The following BLAST results are available for this feature:

BLAST of Sed0005274.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645904.1	7.1e-29	66.67	hypothetical protein Csa_011859 [Cucumis sativus]	[more]
KAG7030269.1	7.4e-26	92.19	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008463014.1	7.4e-26	76.62	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
XP_022975420.1	9.6e-26	93.65	uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]	[more]
XP_023535777.1	9.6e-26	93.65	uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0005274.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	8.2e-20	75.38	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	3.9e-06	46.67	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Sed0005274.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y6	1.8e-30	67.26	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G12...	[more]
A0A1S3CI83	3.6e-26	76.62	RPM1-interacting protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035012...	[more]
A0A6J1ID15	4.7e-26	93.65	uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IGN4	4.7e-26	93.65	uncharacterized protein LOC111474733 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FE40	4.7e-26	93.65	uncharacterized protein LOC111443250 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]

BLAST of Sed0005274.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	4.5e-21	74.24	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	2.9e-20	75.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	3.8e-20	76.19	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	2.4e-19	89.36	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	2.2e-12	60.00	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 e-value: 1.9E-22 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..59
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 3..77
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 3..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0005274	Sed0005274	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005274.1-cds	Sed0005274.1-cds-LG07:42638882..42638939	CDS
Sed0005274.1-cds	Sed0005274.1-cds-LG07:42640620..42640714	CDS
Sed0005274.1-cds	Sed0005274.1-cds-LG07:42640776..42640958	CDS
Sed0005274.1-cds	Sed0005274.1-cds-LG07:42642087..42642092	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005274.1-exon	Sed0005274.1-exon-LG07:42638882..42638939	exon
Sed0005274.1-exon	Sed0005274.1-exon-LG07:42640620..42640714	exon
Sed0005274.1-exon	Sed0005274.1-exon-LG07:42640776..42640958	exon
Sed0005274.1-exon	Sed0005274.1-exon-LG07:42642087..42642092	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0005274.1	Sed0005274.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane