Sed0005163.1 (mRNA) Chayote v1

Overview


Name	Sed0005163.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 4245515 .. 4246849 (+)
Sequence length	738
RNA-Seq Expression	Sed0005163.1
Synteny	Sed0005163.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAGAGTACATTTGACACTTGACATGTGACCACAAATCCAAGCAAAAGGTGAAGATGGGGCCTTCCCTTGGGGTTGGTTGGGTGAATGAATGCCACAATATCCATATCCAAAACTCCAATTCTCATATGGTTGGAATTATGCCCAATCAAAGCTCACACCTCCTTCAACAATGGCCACCAAGCTCTCTCTTTCTTCTTCTTTTTCTTCTTCCCTAACCATCACCAAACTTCCACTCCAACAAAACCCCTCCTCTTCCTTCTTCCCTCCTTTTCCCTCCACCTTTTCATCAACAAACTCAAGAGCTTCCAAGTTCAAGCTTCTTGCAAATTTGGGTAAATTCCTTTTTTTTATTACTTTTGCTTTCGATGTATATAAACATTTACTTCAAAGTGTTTCTGTTGGATCAAGATGATTGTTTTGGCCAGCAATCCAACCCAACCCAACTCATATATTTTTTTAATTGGATTGGATCATAGAATTGTCTTTTCATTTTTAATTCGAATATATATATATTTATTGCTTTTTTTATTATAGAAATCAATATAATAATTTCATTAACAAGTTAGCTTCCATTTATATCATGCATTCTAAAGATTTAAATAACATTTTAATGAATTTTGAAGAATAAAAGTCAAATAAATGCAGACATATATTTTAAAAATTAATAATCAAGTTAGTTCGGGTCAACCTAAACTAATTTTAAACCTAAAAATCAACCTAAATCATGAAATATTTTATTTACTTAAAGCTCAATTCAACTCAACCTTATTAAGTTGGGTTGGTCGGTTATTTGAATTTTCGGGTTGTTCGAACACCACTCCATACACTGATGGGTTTGGAAAAGGTGGTGATGCTATTTTTTAGGTGGTGGAGATGCAGAAGTGAAGAAAGAAGGGAAGAAGAAGTTTATAACCAAGGAAGAAGAGCCAGAGCAGTAAGCAATTCTTTTCTTGTTCAATGTTGTTCAAAAATGGATTTAACTGATTGAATTTGGTGTAGGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCAATGAAGACTCCTCTTCCTTATATCATCATCTTCGGCATGTCGACCCCGTTCGTGATCTTAGCCATTGCTTTTGCCAATGGCTGGGTTAAGGTACCTGTGAGATGATGAATATCTCATCAACTGTAACCTCAGATCATCTTCTTCTACAGCCACCCCACTGGTTATGCCTGTTTTGAGTTGTAATGTAATGTTCCACAATCCAATACTAAACTATATGATATCTCAACTCCATTTGACTCATGAGTTCAGATTGTCTTTCCTTCTATTCCTATACAAGAATTTGTTGTTGGTGTC

mRNA sequence

CCTAGAGTACATTTGACACTTGACATGTGACCACAAATCCAAGCAAAAGGTGAAGATGGGGCCTTCCCTTGGGGTTGGTTGGGTGAATGAATGCCACAATATCCATATCCAAAACTCCAATTCTCATATGGTTGGAATTATGCCCAATCAAAGCTCACACCTCCTTCAACAATGGCCACCAAGCTCTCTCTTTCTTCTTCTTTTTCTTCTTCCCTAACCATCACCAAACTTCCACTCCAACAAAACCCCTCCTCTTCCTTCTTCCCTCCTTTTCCCTCCACCTTTTCATCAACAAACTCAAGAGCTTCCAAGTTCAAGCTTCTTGCAAATTTGGGTGGTGGAGATGCAGAAGTGAAGAAAGAAGGGAAGAAGAAGTTTATAACCAAGGAAGAAGAGCCAGAGCAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCAATGAAGACTCCTCTTCCTTATATCATCATCTTCGGCATGTCGACCCCGTTCGTGATCTTAGCCATTGCTTTTGCCAATGGCTGGGTTAAGGTACCTGTGAGATGATGAATATCTCATCAACTGTAACCTCAGATCATCTTCTTCTACAGCCACCCCACTGGTTATGCCTGTTTTGAGTTGTAATGTAATGTTCCACAATCCAATACTAAACTATATGATATCTCAACTCCATTTGACTCATGAGTTCAGATTGTCTTTCCTTCTATTCCTATACAAGAATTTGTTGTTGGTGTC

Coding sequence (CDS)

ATGCCACAATATCCATATCCAAAACTCCAATTCTCATATGGTTGGAATTATGCCCAATCAAAGCTCACACCTCCTTCAACAATGGCCACCAAGCTCTCTCTTTCTTCTTCTTTTTCTTCTTCCCTAACCATCACCAAACTTCCACTCCAACAAAACCCCTCCTCTTCCTTCTTCCCTCCTTTTCCCTCCACCTTTTCATCAACAAACTCAAGAGCTTCCAAGTTCAAGCTTCTTGCAAATTTGGGTGGTGGAGATGCAGAAGTGAAGAAAGAAGGGAAGAAGAAGTTTATAACCAAGGAAGAAGAGCCAGAGCAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCAATGAAGACTCCTCTTCCTTATATCATCATCTTCGGCATGTCGACCCCGTTCGTGATCTTAGCCATTGCTTTTGCCAATGGCTGGGTTAAGGTACCTGTGAGATGA

Protein sequence

MPQYPYPKLQFSYGWNYAQSKLTPPSTMATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSRASKFKLLANLGGGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR

Homology

[Close]

BLAST of Sed0005163.1 vs. NCBI nr
Match: XP_008464165.1 (PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 uncharacterized protein E6C27_scaffold137G00170 [Cucumis melo var. makuwa] >TYK11961.1 uncharacterized protein E5676_scaffold177G001450 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 26  STMATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSR---ASKFKLLANLG 85
           STMA K  LSSS +      K PLQQNPSSSFFPP PS FSS   R   +S+FKLLANLG
Sbjct: 43  STMAAKFPLSSSLT-----VKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLG 102

Query: 86  GGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 145
           GGDAE+KK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 103 GGDAEIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 162

Query: 146 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 163 ANGWVKVPVR 167

[Close]

BLAST of Sed0005163.1 vs. NCBI nr
Match: XP_004140001.1 (uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical protein Csa_005653 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 8.6e-46
Identity = 107/128 (83.59%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSR---ASKFKLLANLGGG 87
           MA K  L    SSSLTI K PLQQNPSSSFFPP PS FSS   R   +S+FKLLANLGGG
Sbjct: 1   MAAKFPL----SSSLTI-KFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGG 60

Query: 88  DAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 147
           DAE+KK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN
Sbjct: 61  DAEIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 120

Query: 148 GWVKVPVR 153
           GWVKVPVR
Sbjct: 121 GWVKVPVR 123

[Close]

BLAST of Sed0005163.1 vs. NCBI nr
Match: XP_022971133.1 (uncharacterized protein LOC111469898 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-42
Identity = 104/128 (81.25%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFP-STFS--STNSRASKFKLLANLGGG 87
           MA K  L    SSSLT  K PLQQNP S FFPP P +TFS      RAS+FKLLAN GGG
Sbjct: 1   MAAKFPL----SSSLTTIKFPLQQNP-SPFFPPLPCTTFSPPKPKPRASQFKLLANSGGG 60

Query: 88  DAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 147
           DAEVKK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN
Sbjct: 61  DAEVKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 120

Query: 148 GWVKVPVR 153
           GWVKVPVR
Sbjct: 121 GWVKVPVR 123

[Close]

BLAST of Sed0005163.1 vs. NCBI nr
Match: XP_022140463.1 (uncharacterized protein LOC111011130 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 5.8e-42
Identity = 105/130 (80.77%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTN----SRASKFKLLANLGG 87
           MA K +L    SSSLTI K PLQQNP SSFF P PS  SS N    SRAS+FKL+ANLGG
Sbjct: 1   MAAKFAL----SSSLTI-KFPLQQNP-SSFFAPLPSGLSSPNPKPKSRASRFKLVANLGG 60

Query: 88  GDAEVKK-EGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 147
           GDAE+KK  GKKKFITKEEEPEQYWQ+AGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 61  GDAEIKKGGGKKKFITKEEEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 120

Query: 148 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 121 ANGWVKVPVR 124

[Close]

BLAST of Sed0005163.1 vs. NCBI nr
Match: XP_023534591.1 (uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 8.4e-41
Identity = 102/130 (78.46%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFP-STFS----STNSRASKFKLLANLG 87
           MA K  L    SSSLT  K PLQQNP S FF P P +TFS        RAS+FKLLAN G
Sbjct: 1   MAAKFPL----SSSLTTIKFPLQQNP-SPFFAPLPCTTFSPPQPRPTPRASQFKLLANSG 60

Query: 88  GGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 147
           GGDAEVKK GKKKFITKE+EPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 61  GGDAEVKKGGKKKFITKEQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 120

Query: 148 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 121 ANGWVKVPVR 125

[Close]

BLAST of Sed0005163.1 vs. ExPASy TrEMBL
Match: A0A5D3CJG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001450 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 26  STMATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSR---ASKFKLLANLG 85
           STMA K  LSSS +      K PLQQNPSSSFFPP PS FSS   R   +S+FKLLANLG
Sbjct: 43  STMAAKFPLSSSLT-----VKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLG 102

Query: 86  GGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 145
           GGDAE+KK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 103 GGDAEIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 162

Query: 146 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 163 ANGWVKVPVR 167

[Close]

BLAST of Sed0005163.1 vs. ExPASy TrEMBL
Match: A0A1S3CKW7 (uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 26  STMATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSR---ASKFKLLANLG 85
           STMA K  LSSS +      K PLQQNPSSSFFPP PS FSS   R   +S+FKLLANLG
Sbjct: 43  STMAAKFPLSSSLT-----VKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLG 102

Query: 86  GGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 145
           GGDAE+KK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 103 GGDAEIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 162

Query: 146 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 163 ANGWVKVPVR 167

[Close]

BLAST of Sed0005163.1 vs. ExPASy TrEMBL
Match: A0A0A0KA68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.2e-46
Identity = 107/128 (83.59%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSR---ASKFKLLANLGGG 87
           MA K  L    SSSLTI K PLQQNPSSSFFPP PS FSS   R   +S+FKLLANLGGG
Sbjct: 1   MAAKFPL----SSSLTI-KFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGG 60

Query: 88  DAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 147
           DAE+KK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN
Sbjct: 61  DAEIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 120

Query: 148 GWVKVPVR 153
           GWVKVPVR
Sbjct: 121 GWVKVPVR 123

[Close]

BLAST of Sed0005163.1 vs. ExPASy TrEMBL
Match: A0A6J1I5Y3 (uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.6e-43
Identity = 104/128 (81.25%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFP-STFS--STNSRASKFKLLANLGGG 87
           MA K  L    SSSLT  K PLQQNP S FFPP P +TFS      RAS+FKLLAN GGG
Sbjct: 1   MAAKFPL----SSSLTTIKFPLQQNP-SPFFPPLPCTTFSPPKPKPRASQFKLLANSGGG 60

Query: 88  DAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 147
           DAEVKK GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN
Sbjct: 61  DAEVKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFAN 120

Query: 148 GWVKVPVR 153
           GWVKVPVR
Sbjct: 121 GWVKVPVR 123

[Close]

BLAST of Sed0005163.1 vs. ExPASy TrEMBL
Match: A0A6J1CI22 (uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011130 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.8e-42
Identity = 105/130 (80.77%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 28  MATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTN----SRASKFKLLANLGG 87
           MA K +L    SSSLTI K PLQQNP SSFF P PS  SS N    SRAS+FKL+ANLGG
Sbjct: 1   MAAKFAL----SSSLTI-KFPLQQNP-SSFFAPLPSGLSSPNPKPKSRASRFKLVANLGG 60

Query: 88  GDAEVKK-EGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 147
           GDAE+KK  GKKKFITKEEEPEQYWQ+AGEREGENPMKTPLPYIIIFGMSTPFVILAIAF
Sbjct: 61  GDAEIKKGGGKKKFITKEEEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 120

Query: 148 ANGWVKVPVR 153
           ANGWVKVPVR
Sbjct: 121 ANGWVKVPVR 124

[Close]

BLAST of Sed0005163.1 vs. TAIR 10
Match: AT4G13500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-35
Identity = 83/127 (65.35%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 26  STMATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSRASKFKLLANLGGGD 85
           S+ + + S SS+ SSS   + L L Q     F PP P  F        +FKL A LGGGD
Sbjct: 10  SSFSHRASDSSTSSSSSYSSLLALPQ----FFCPPSPLGF-------PEFKLHAKLGGGD 69

Query: 86  AEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANG 145
            EVK + KKKFITKEEEPEQYWQ+ GEREGENPMKTPLPYIIIFGMSTPFVILAIAFANG
Sbjct: 70  GEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANG 125

Query: 146 WVKVPVR 153
           W+KVP+R
Sbjct: 130 WIKVPIR 125

[Close]

BLAST of Sed0005163.1 vs. TAIR 10
Match: AT2G05310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-34
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 20  SKLTPPSTM---ATKLSLSSSFSSSLTITKLPLQQNPSSSFFPPFPSTFSSTNSRASKFK 79
           +KL  PS+     T  S++SS SS  ++  LP        F PP P  F        +FK
Sbjct: 3   AKLCIPSSSFSHRTNDSITSSSSSYSSLLALP------QFFCPPSPLGF-------PQFK 62

Query: 80  LLANLGGGDAEVKKEGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFV 139
           L A LGGGD EVK + KKKFITK+EEPEQYWQ+ GEREGENPMKTPLPYIIIFGMSTPFV
Sbjct: 63  LHAKLGGGDGEVKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFV 122

Query: 140 ILAIAFANGWVKVPVR 153
           ILAIAFANGW+KVP+R
Sbjct: 123 ILAIAFANGWIKVPIR 125

The following BLAST results are available for this feature:

BLAST of Sed0005163.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464165.1	1.7e-46	81.54	PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 unc...	[more]
XP_004140001.1	8.6e-46	83.59	uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical ...	[more]
XP_022971133.1	2.0e-42	81.25	uncharacterized protein LOC111469898 [Cucurbita maxima]	[more]
XP_022140463.1	5.8e-42	80.77	uncharacterized protein LOC111011130 [Momordica charantia]	[more]
XP_023534591.1	8.4e-41	78.46	uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0005163.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005163.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJG8	8.4e-47	81.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKW7	8.4e-47	81.54	uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=...	[more]
A0A0A0KA68	4.2e-46	83.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1	[more]
A0A6J1I5Y3	9.6e-43	81.25	uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898...	[more]
A0A6J1CI22	2.8e-42	80.77	uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Sed0005163.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13500.1	7.3e-35	65.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G05310.1	2.1e-34	61.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36343	EXPRESSED PROTEIN	coord: 28..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0005163	Sed0005163	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005163.1-five_prime_utr	Sed0005163.1-five_prime_utr-LG01:4245515..4245604	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005163.1-exon	Sed0005163.1-exon-LG01:4245515..4245848	exon
Sed0005163.1-exon	Sed0005163.1-exon-LG01:4246381..4246450	exon
Sed0005163.1-exon	Sed0005163.1-exon-LG01:4246516..4246849	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005163.1-cds	Sed0005163.1-cds-LG01:4245605..4245848	CDS
Sed0005163.1-cds	Sed0005163.1-cds-LG01:4246381..4246450	CDS
Sed0005163.1-cds	Sed0005163.1-cds-LG01:4246516..4246660	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005163.1-three_prime_utr	Sed0005163.1-three_prime_utr-LG01:4246661..4246849	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0005163.1	Sed0005163.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane