Sed0004507.1 (mRNA) Chayote v1

Overview


Name	Sed0004507.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 6887235 .. 6890546 (+)
Sequence length	660
RNA-Seq Expression	Sed0004507.1
Synteny	Sed0004507.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTGCGTCGTGGGCTGAATCAATGCCAATGCCCGGTGGGGGTTGCGAATTAGGAGCAGCATGTAACAGTTTGATGCATCCATAATTGTGACAACGAAAATCAAACAATAATGGAGGATGACGAGCTGCCAGAAATTGCAAGCACTGCTTGGACTTGCGCAGGACTTGCATTGCAACCCCACCTCCTCTTGTTAATCACTGAAACAAAACATATATTCAAAAAACTTATCTAATTTTCTTTTTCCGAAGGCCTGAAATTTGCAGCCTGTGGTTGAGTTGAGGCGGCCAGAGAGAGGGAAAATCGGGCTTACCTGTACCGCGTCGCAGGGGAAAACAAAGCTCCCATCTTTTCTTCTGATGTTTATGAAGAGTGCTCTCCAAGTTATCTTATCCTTTTTTCTATAATTGCACAGATTTCGTTTCCTTGTGATAATATACTGAATTTCTTTTTTAATATTCTTTCCAAAAATAATAAAATAAAGAAACAGGTTGGACTGAGTTGAGTGCCTTTTCACCAAACAAAAACAAAAAGGGTTTCAACTTTAAACTCCGTCGCATCACCTTTTCATGAATAGATGAAATATCATTAATTTGATTTATTTATTATTTGTACCCCCAAACTTCCTTCCTCACCAAAAACCATCTCCCCGACTTCCCGTTTCCGGCCAGATTCCACCGGGCCGTTTCTTCAACTCCATCCACCCACTTCTGATCGGTAAACACTCAACCCATTTTGGTTTATTTTAGAATCCCCATTTACTTTTTAATCCCAAATTGAAACCTCCAATTACTACGTTACTTCAATGTCTACGATTTATTCCAAGGTCTATTTGTTACATTCATTTATAGAGACCTTTCGGTTTCATGCTCCATTCTTTGGATGTGGAGGGATCTGATTTTTGAATTTCAAAAAAACAAAAATTAAAATAGTTATTAAGCACGGGTTTCCTCATCCGTTTGCTATCAATGGGATTGCGAGGGACAACGAACATCCACAAACCTCCACATTGATATGATATCGTCTACTTTGCAATCTCTCAAAAAAAAAAAAAACTCATATCAATGGAGGTGTCTATCTCTTATCTTAAGCGATGTGGGATAATTTTGTTTGTTTAACAGTTGTATTAGTTTGAGTCTCATTTGTGGTTCCTCTAGTCTAAGTTGTGGCTCGCCTGCTTTATGCAACAACCAACCATTAAATATGCTAGAGAAGTTTAAATCATCTAAAATATTTTATTTTGTAATTGTTTTGTTGGGCCATGGAATGGATGCGCAGGATGTCGAAATCAAAGCACTGCTGGGAGCTTCTGAAACCTTTATTTGTATTTAATTTTCCATCTCGGGCAGCTTGTATCTCTCAATGGCGCAATTGTTGTGGCCTCAGCCGCCCCCAGCGCTGCACCTGTGCCTCTGGCTACAATGGTCAATTTTACGGGACATGCATCAAGTTGCTTCAAGCTGATCCCGACGGTACATATAGATATAATCCTTCGGAACCGCAGCTAAAGCCTCCAACCGGCCTAGCCCCAACTCTTCCTATTGATTCATGTATGCAATTCCTTTAACAATAATTGTTACTATTATTATCATCATCAAAATGAACTTAATTGGTTTCCTTTGCAGCCCATGATGCAGAGTGCATTTATAAACATATGCATGCTTCTCTATTACAAGAAGAGGAACCACCTGCTGGCATGCTGTTGGCAATGATCCAACGCTGTAGGACCTACTATGACATTAATCTTCTAATTTTCTTTCTCAAACTACAGAAATTGCAGGTTGTAGTTGAACACTCACTCATTTCAACCTCTATATTATTTATTATAATTAATTAACTCACTCATTTTCTTTGCAGTTTAGAAAAAACCCCGATGCACATCTTACCGAAGAAATCACCCGAGCGTGTTTACGTTCCGGGGCTCTTCTCTACGGTATTCACAAACCCCCCCCTTCCCTCTTTCTATGTATGCAAATCAATTAGTTAGTTAATTAATTACATGTTTGGGTACATGTGTTGCAGCTCAAATGACTATGTGTAGGGCTAATACCTATGGATTCACGCCTAATATTGGTTCTGTCATTCCTTTCCTGGTTCGTCATATCATATCATATCATCTTCCTATGCATTACTTATTTAATTCTTCCATTCATGTTTATTATTGAACTGTCTAATTTATTTAAGTTTTTTTTTTCAAACTTGGTTTAGAATTATGCTAAAGATCATGATGATATTAAACTCACAGAAGTAATTGTCCGTCTTATGAGAATTAACAACTGGCCACTCGGACCTGATGCTGCAGAAATCATTCTCAAGTAAACTATATAATATATTATTGTTATCATCATTATTAGCTATGAAATATCAAAGTTTGTCATTTCTTTTGTAGAATTTATAGTTCGGAAAAAATTACCAAGGGATTGTTATTCATTATGACCGTAAGAAAATTTATCTCAACGGGAGTAAAACTTCACCAATCATCTCTTGAAATGTCCATGGAGTTTGCTGCAAACATAGGTATATATAGGCTAATTAATATTCTATCACTTGGTATCAAAATCATGTTATTTGTTGTTTTGGTTCATGTATTTTAAATAAGCTTTGATTATGGAATTTGCTGCCTAACATAGGTACATATAGGCCAATTAATATTTTATCACTTAGTATCAAAATCATGTTATTTGTTGTTTTGATTCATGTATTTTAAATAAGCTTTGATTATTTATTATTCATTGTTTTCTTAATCCAAATTTCTCCTTTCATCAAAATTCAGGAGATGCGGATTCCGTACGAGATTTTGAGAAGACCAGAGCTCAAGTGACGACCCGACATACTTGTAAAAGTGGATTTGCCTATGCTAAGGTATTATACAAAAACATATTATATGTTTAATAGGAATCATTGATATATTTCAATGGTCGTTTTTGCTATCTTCTAGAGTTTTCTATTAAACCGCGAGCCTGAAAAAGCTGCCGAAGTCATCATAGAACTCCTTCCTCAGGTAATTAGACGTTTGTATTCATAATTTTGTTTTGTTTTTGTTTTTTGAAAAATTAACAACAATTTAAAAAAAAATTCTAGTTACTGACTCCATATATCTATGCCTTTGATCCATGTCAGTATTTGCCTATGGTAGATGATGATCCACTCATAATTCATGATATTGAATACTATCGAAGAAAAGGAGAGTCATGGCCCACTGAGCTAATGATTGAGATTCAAAAGATGGTAAATGAATGGCCGGTCAAAATTGCGAAGATTCGAATATCACATATAAAAAGAAAGGTTCTAATATTTCCTGTGCCTTAA

mRNA sequence

ATGGCCTCTGCGTCGTGGGCTGAATCAATGCCAATGCCCGGTGGGGGTTGCGAATTAGGAGCAGCATATTCCACCGGGCCGTTTCTTCAACTCCATCCACCCACTTCTGATCGGATGTCGAAATCAAAGCACTGCTGGGAGCTTCTGAAACCTTTATTTGTATTTAATTTTCCATCTCGGGCAGCTTGTATCTCTCAATGGCGCAATTGTTGTGGCCTCAGCCGCCCCCAGCGCTGCACCTGTGCCTCTGGCTACAATGGTCAATTTTACGGGACATGCATCAAGTTGCTTCAAGCTGATCCCGACGGTACATATAGATATAATCCTTCGGAACCGCAGCTAAAGCCTCCAACCGGCCTAGCCCCAACTCTTCCTATTGATTCATATGCGGATTCCGTACGAGATTTTGAGAAGACCAGAGCTCAAGTGACGACCCGACATACTTGTAAAAGTGGATTTGCCTATGCTAAGTATTTGCCTATGGTAGATGATGATCCACTCATAATTCATGATATTGAATACTATCGAAGAAAAGGAGAGTCATGGCCCACTGAGCTAATGATTGAGATTCAAAAGATGGTAAATGAATGGCCGGTCAAAATTGCGAAGATTCGAATATCACATATAAAAAGAAAGGTTCTAATATTTCCTGTGCCTTAA

Coding sequence (CDS)

ATGGCCTCTGCGTCGTGGGCTGAATCAATGCCAATGCCCGGTGGGGGTTGCGAATTAGGAGCAGCATATTCCACCGGGCCGTTTCTTCAACTCCATCCACCCACTTCTGATCGGATGTCGAAATCAAAGCACTGCTGGGAGCTTCTGAAACCTTTATTTGTATTTAATTTTCCATCTCGGGCAGCTTGTATCTCTCAATGGCGCAATTGTTGTGGCCTCAGCCGCCCCCAGCGCTGCACCTGTGCCTCTGGCTACAATGGTCAATTTTACGGGACATGCATCAAGTTGCTTCAAGCTGATCCCGACGGTACATATAGATATAATCCTTCGGAACCGCAGCTAAAGCCTCCAACCGGCCTAGCCCCAACTCTTCCTATTGATTCATATGCGGATTCCGTACGAGATTTTGAGAAGACCAGAGCTCAAGTGACGACCCGACATACTTGTAAAAGTGGATTTGCCTATGCTAAGTATTTGCCTATGGTAGATGATGATCCACTCATAATTCATGATATTGAATACTATCGAAGAAAAGGAGAGTCATGGCCCACTGAGCTAATGATTGAGATTCAAAAGATGGTAAATGAATGGCCGGTCAAAATTGCGAAGATTCGAATATCACATATAAAAAGAAAGGTTCTAATATTTCCTGTGCCTTAA

Protein sequence

MASASWAESMPMPGGGCELGAAYSTGPFLQLHPPTSDRMSKSKHCWELLKPLFVFNFPSRAACISQWRNCCGLSRPQRCTCASGYNGQFYGTCIKLLQADPDGTYRYNPSEPQLKPPTGLAPTLPIDSYADSVRDFEKTRAQVTTRHTCKSGFAYAKYLPMVDDDPLIIHDIEYYRRKGESWPTELMIEIQKMVNEWPVKIAKIRISHIKRKVLIFPVP

Homology

The following BLAST results are available for this feature:

BLAST of Sed0004507.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0004507.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0004507.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0004507.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0004507	Sed0004507	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004507.1-exon	Sed0004507.1-exon-LG03:6887235..6887301	exon
Sed0004507.1-exon	Sed0004507.1-exon-LG03:6887909..6887954	exon
Sed0004507.1-exon	Sed0004507.1-exon-LG03:6888516..6888787	exon
Sed0004507.1-exon	Sed0004507.1-exon-LG03:6890014..6890099	exon
Sed0004507.1-exon	Sed0004507.1-exon-LG03:6890358..6890546	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004507.1-cds	Sed0004507.1-cds-LG03:6887235..6887301	CDS
Sed0004507.1-cds	Sed0004507.1-cds-LG03:6887909..6887954	CDS
Sed0004507.1-cds	Sed0004507.1-cds-LG03:6888516..6888787	CDS
Sed0004507.1-cds	Sed0004507.1-cds-LG03:6890014..6890099	CDS
Sed0004507.1-cds	Sed0004507.1-cds-LG03:6890358..6890546	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0004507.1	Sed0004507.1-protein	polypeptide