Sed0003291.1 (mRNA) Chayote v1

Overview


Name	Sed0003291.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L34
Location	LG12: 30535834 .. 30538867 (+)
Sequence length	715
RNA-Seq Expression	Sed0003291.1
Synteny	Sed0003291.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGGATTCGTCTTCTTATTTGTATTCTCAATAAACCCTAAAAAATCTGTGCAGCAGCTCCTGATCCAGAGCCAAGAAGAGTGGAGAATCGTCGAAAATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCCACCAAATCGAACCAGCACCGTGTCGTCAAAACTCCCGGTAATTCCATCAGATTTAGGTTCTTGTTTTGAGAGCTTTGCATTCTTGATTTTGATCCATCCTGTTCTTTGTTCTTCGTACATTTGATCTTTCCTTGAAGTTCTTGGATGTTCATTGTGTTGTTAATTTCTACTCGACTGGTTTTTTATGTGAATGAGATTTGTTTTTCGTTGATGTAGATGTGTATTTCTTATTGTTGTTGTTATTTTCTGTTTTAAGGCGGGAAGCTTGTGTACCAGACTACCAAGAAACGAGCCAGTGGACCTAAATGTCCGGTTACCGGAAAACGGATTCAGGGGGTTAGTTTCAATTACTTATTTAATCATTAAGGCCCGTTTGATAACCATTAAATTATTTCTACTCGAATTTCCTTGTGTGCTCCATCTTTTATACAATTTATCCAATACTAACCAAGTTTCAAAAACAAAAACTAGCTTTTGGAAGCTACACTCTTTTGTTTACAAATTTTGGTTTTGTTTATCGAAATAGCTTTTGGAAGCTGCTCTTTTTTGTTTCTAAATTTTAGTTTTGTTTATTGAAATATATGTAAGATGTAGATATCCAAGTAAGGAATAAAATATAGTGAGGTAGGTTTTGTAGGCTTAAATTTCATAAACAAAAAACTAAAAACAAAGTGGTTATCAAACGGGACCTAAACTAGTTCCGTTTTCCTGTTGAATTCCTGAATATTTTGATTTTTTATGGCTTTTTTATGTTGGTTATGATATATTTTTTATTATGTTCGTTTTTGTCTTTAGACTCTTTCAGTGGTTTGATTGATGCTGATCGATTTTCTTTATTTTTTATTTTTGTTTGCACTTTCTAACTTATTTAGTAGCTGAGGAAAATGGAGAATAAGAACTGATGAATATTGTTCTCTGTAGTTGTTTTTGGTGCATGAGAGTAAATTTGTTGTTGATCAGTGCTGAAATTCTATGTAATCCAACTATGAAGCACTGACACTTCGAAATAGGGAGAGAATCCATCTCAGAACGTATCCTTTCGGATATTTTTGAAGGATATTTTTGTGTCTTGTATTTATTACTCTTTTTAGTAAACATACACACCTTGTGAACATACGTCGTCTTTGAGCCCAAATGTTTTAACCCAAATTCAATGTAATTAATGTTATAATCAACTAATTAATAGAAGGGTTAAGAAAGGCAATAGGAATTCTCAAAAAAAAAAAAAAAAGGCAATAGAAAAACTGAAAAAAATCTGTCTTCGTTTTCTGTAATACTCCTTTGCCTACATCTTGCATGCTGTGGGTTCATTTTAATTAAATTAGCATTATTTTTTTTGTCTTAAAAAAACATTATATATTTATAGTAGTATATTTTATGCCAAATTTACATGTACTCTAAAATAAATTAATGTATCCTCTACTTATTTTTGTCCTAATTTTTTAGAAAATAGCATATTGCCATGTCTTGTCGTGTTGGTATCTTTACTTCATAATAATCCAAAATCCGCTCGTAGGTAATTTTCTTATATCAATGAAAGTTCCTTTTTTCCATCCAAACCGGTATGGAAATTATGTTTCATGGGTGAAGGCTTGAACTGTGAAGGTGTGCTCCATTCAAGGTTTCAAATTCGGAATACAATTGTGACATTAGTTTGTAGACACCTTTTGTGTCTTCATTCCTTTGATATCACTATGTGCTTTACCTAGGGACAGACGTGGTTATTGGGTATAGTTGAGCGAAACTCCAATTTCCTAGTTTAAAAGAAATAAATTAAAAGCTTTATATTTTTATAGCCTTCCATATGTGAAGACTTGAGCTTTGAAGGTGTGCTCCACTCAAAGTTTCAAGTTCGGGAGTCAATTGTGACATTAGTTTGTAGACACCTTTTGTGTCTTCATTCCTTTGATATCACTCCCTGCCTTACCTAGGAACAGACGTAGTTATTTGGTATAGTTGAGCGAAACTCCAATTTCCTGTTTTAAAAAAAATGAAATTAAAAGCTTTATATTTTTATAGCCTATATGCATAATTCTAGACGCGATCGTCTCTGCTACATCCATTTTTGTACGTTCGTAGATCATTTGTGCTTCGTTGCATTCATCGTTTGTATGTTTGTAGACACGTGTGCATTTGTGCACTCATTTGCACAACTTAAGCCGCCACCCTCTGAATTGTGTGATCGGCATCTAAATTGAGTGGCGTTTTTATGAGTTGGGTATTGGTCTCTTGTTCATTTGTTGTTGCACTAAGCTGTTGATGAATTTGCATTTTTGCGAAAAGATGGTGCCAGACCAGATTGCCTTAGTTAATCCAAATAAACTTTTGATCCCTGCAGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGGAGGACCGTGAATCGTGCATACGGTGGCGTTTTATCCGGTGGTGCCGTTAGGGAGAGGTTTTCCACCCGTTGCTTTGTCTCATCATTCAATATTTCAATTGTTTGATTGTATTTTTCTTAAGGTAGTTTCTTAATCTCTCTTTCACTGGTGATAGGATCATTCGAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATTCAGAAAGCAAAGGACAAAGTAGCAAAGAGTTAAACTGGCCATTGGTGATTTTAGAACATTGAAGAAATTTTGAATTTTTGTGACTTTATGGTTTGTTTTAGTCATCAAGTTTGATATGGAAGGATTGGTATTTTTGCTCCAGAATTAAACTTTAATTGATATGGTATACACTTTTATGATATATTTGTGTTGGTTATTAGTTGTCTTAGTGGCATTTCCTCACAATTTCTTAACAATTTCCCTGCATGAATTTAATCAAATGTCATGATTGATCTTCTTACCAATTTCTT

mRNA sequence

CATGGGATTCGTCTTCTTATTTGTATTCTCAATAAACCCTAAAAAATCTGTGCAGCAGCTCCTGATCCAGAGCCAAGAAGAGTGGAGAATCGTCGAAAATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCCACCAAATCGAACCAGCACCGTGTCGTCAAAACTCCCGGCGGGAAGCTTGTGTACCAGACTACCAAGAAACGAGCCAGTGGACCTAAATGTCCGGTTACCGGAAAACGGATTCAGGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGGAGGACCGTGAATCGTGCATACGGTGGCGTTTTATCCGGTGGTGCCGTTAGGGAGAGGATCATTCGAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATTCAGAAAGCAAAGGACAAAGTAGCAAAGAGTTAAACTGGCCATTGGTGATTTTAGAACATTGAAGAAATTTTGAATTTTTGTGACTTTATGGTTTGTTTTAGTCATCAAGTTTGATATGGAAGGATTGGTATTTTTGCTCCAGAATTAAACTTTAATTGATATGGTATACACTTTTATGATATATTTGTGTTGGTTATTAGTTGTCTTAGTGGCATTTCCTCACAATTTCTTAACAATTTCCCTGCATGAATTTAATCAAATGTCATGATTGATCTTCTTACCAATTTCTT

Coding sequence (CDS)

ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCCACCAAATCGAACCAGCACCGTGTCGTCAAAACTCCCGGCGGGAAGCTTGTGTACCAGACTACCAAGAAACGAGCCAGTGGACCTAAATGTCCGGTTACCGGAAAACGGATTCAGGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGGAGGACCGTGAATCGTGCATACGGTGGCGTTTTATCCGGTGGTGCCGTTAGGGAGAGGATCATTCGAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATTCAGAAAGCAAAGGACAAAGTAGCAAAGAGTTAA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVAKS

Homology

[Close]

BLAST of Sed0003291.1 vs. NCBI nr
Match: XP_010066914.2 (60S ribosomal protein L34 [Eucalyptus grandis])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDK+A
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKLA 117

[Close]

BLAST of Sed0003291.1 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 745 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 804

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 805 EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 861

[Close]

BLAST of Sed0003291.1 vs. NCBI nr
Match: KAB1208050.1 (60S ribosomal protein L34 [Morella rubra])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKIA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.7e-55
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK K+K A
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-55
Identity = 110/117 (94.02%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAK+KVA
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.4e-54
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAK+KVA
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-52
Identity = 106/117 (90.60%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAK+K A
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL
Match: A0A6A1VA59 (60S ribosomal protein L34 OS=Morella rubra OX=262757 GN=CJ030_MR7G000834 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K+A
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKIA 117

[Close]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL
Match: I3NMK4 (60S ribosomal protein L34A OS=Hevea brasiliensis OX=3981 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK+K A
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA 117

[Close]

BLAST of Sed0003291.1 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAK+KVA
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVA 117

[Close]

BLAST of Sed0003291.1 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-55
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAK+KVA
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVA 117

[Close]

BLAST of Sed0003291.1 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 7.2e-54
Identity = 106/117 (90.60%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKVA 118
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAK+K A
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTA 117

[Close]

BLAST of Sed0003291.1 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRAYGGVLSGGAVRERII 93
          EYKRSRL+RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of Sed0003291.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010066914.2	2.3e-54	98.29	60S ribosomal protein L34 [Eucalyptus grandis]	[more]
XP_004138175.3	3.0e-54	98.29	60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei...	[more]
XP_038893923.1	3.0e-54	98.29	60S ribosomal protein L34-like [Benincasa hispida]	[more]
KAG6583599.1	3.0e-54	98.29	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAB1208050.1	3.9e-54	97.44	60S ribosomal protein L34 [Morella rubra]	[more]

BLAST of Sed0003291.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40590	3.7e-55	94.87	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
P41098	4.8e-55	94.02	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
Q42351	1.4e-54	93.16	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	5.4e-54	92.31	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	1.0e-52	90.60	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of Sed0003291.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6I6	1.5e-54	98.29	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ...	[more]
A0A6J1HLN7	1.5e-54	98.29	60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=...	[more]
A0A6J1DF78	1.5e-54	98.29	60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV...	[more]
A0A6A1VA59	1.9e-54	97.44	60S ribosomal protein L34 OS=Morella rubra OX=262757 GN=CJ030_MR7G000834 PE=3 SV...	[more]
I3NMK4	3.3e-54	98.29	60S ribosomal protein L34A OS=Hevea brasiliensis OX=3981 GN=RPL34A PE=2 SV=1	[more]

BLAST of Sed0003291.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	1.0e-55	93.16	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	3.8e-55	92.31	ribosomal protein L34	[more]
AT3G28900.1	7.2e-54	90.60	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	1.5e-43	91.30	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 44..54 score: 50.0 coord: 66..88 score: 44.72 coord: 13..26 score: 59.18 coord: 26..43 score: 53.57
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 2.4E-38 score: 130.3
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..117
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 4.4E-22 score: 79.5
None	No IPR available	GENE3D	6.20.340.10		coord: 39..119 e-value: 3.7E-36 score: 124.9
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..117
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0003291	Sed0003291	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003291.1-five_prime_utr	Sed0003291.1-five_prime_utr-LG12:30535834..30535931	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003291.1-exon	Sed0003291.1-exon-LG12:30535834..30536010	exon
Sed0003291.1-exon	Sed0003291.1-exon-LG12:30536230..30536309	exon
Sed0003291.1-exon	Sed0003291.1-exon-LG12:30538312..30538421	exon
Sed0003291.1-exon	Sed0003291.1-exon-LG12:30538520..30538867	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003291.1-cds	Sed0003291.1-cds-LG12:30535932..30536010	CDS
Sed0003291.1-cds	Sed0003291.1-cds-LG12:30536230..30536309	CDS
Sed0003291.1-cds	Sed0003291.1-cds-LG12:30538312..30538421	CDS
Sed0003291.1-cds	Sed0003291.1-cds-LG12:30538520..30538610	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003291.1-three_prime_utr	Sed0003291.1-three_prime_utr-LG12:30538611..30538867	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0003291.1	Sed0003291.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome