Sed0001344.1 (mRNA) Chayote v1

Overview


Name	Sed0001344.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein FAF-like, chloroplastic
Location	LG11: 27960831 .. 27962124 (-)
Sequence length	1294
RNA-Seq Expression	Sed0001344.1
Synteny	Sed0001344.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATATAGATTTGGGTGTAAAACCACTCAAAAACACATCTCACTTGAACCAAACAGATCCCAAAAAGCCTGGACCCTGGCCTACTTTAAAGCACCTTATTTTGATCAATTCAACCCTCACAACAACATGCAAATCCCAATCTCAATTTCATTATTCTGAAAAAACATATAATCACTCTTCATATCAACTTTTGTCTCTTTTTTATCTCTCTCTGCAAATTCTGCAGAAGAGACTATATTCCTCTCTATAATCCCCCACCCAGCCAGCCAGCCAGCCATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGATGCTGATGAGATAAGAGCAATCACTTTCTTAGATAGAATACTTTAATTTAACCTTTTCTTCTAAAAACCTTCTGAATAAGGCTCTAAGTATTTTCATTTTTTTCTTATCTGGTGATTGATGATTGCCTTCTTCCTAGGAATTTAATGTGTCCAATTTGAAGTTCATGAGTATTTCAGAAGCATTATTGATGTTGTTCTCTATTTCATGCATATTAATTTTACTTATCTGGGATTCTGAACTATAACATCCAGCCTATTCATATACCAACTGAATTTAATGTGTTGTGAAAAAACTTCACAAACACTATGGTCAAGAGAATAATCGATTCTCT

mRNA sequence

CAAAATATAGATTTGGGTGTAAAACCACTCAAAAACACATCTCACTTGAACCAAACAGATCCCAAAAAGCCTGGACCCTGGCCTACTTTAAAGCACCTTATTTTGATCAATTCAACCCTCACAACAACATGCAAATCCCAATCTCAATTTCATTATTCTGAAAAAACATATAATCACTCTTCATATCAACTTTTGTCTCTTTTTTATCTCTCTCTGCAAATTCTGCAGAAGAGACTATATTCCTCTCTATAATCCCCCACCCAGCCAGCCAGCCAGCCATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGATGCTGATGAGATAAGAGCAATCACTTTCTTAGATAGAATACTTTAATTTAACCTTTTCTTCTAAAAACCTTCTGAATAAGGCTCTAAGTATTTTCATTTTTTTCTTATCTGGTGATTGATGATTGCCTTCTTCCTAGGAATTTAATGTGTCCAATTTGAAGTTCATGAGTATTTCAGAAGCATTATTGATGTTGTTCTCTATTTCATGCATATTAATTTTACTTATCTGGGATTCTGAACTATAACATCCAGCCTATTCATATACCAACTGAATTTAATGTGTTGTGAAAAAACTTCACAAACACTATGGTCAAGAGAATAATCGATTCTCT

Coding sequence (CDS)

ATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGA

Protein sequence

MAAACGSLLPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDRRRSYSFSSSSNSESLQLCTEGLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREAAKEEDAKDDHHHPDDSIDKCCRVQTSST

Homology

[Close]

BLAST of Sed0001344.1 vs. NCBI nr
Match: XP_008461212.1 (PREDICTED: protein FAF-like, chloroplastic [Cucumis melo] >KAA0035517.1 protein FAF-like [Cucumis melo var. makuwa] >TYK31014.1 protein FAF-like [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-59
Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDI--- 62
           AACGSL       LPEN T L     SSW QIM LK TE  S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFENPLPENPTLL--EHLSSWNQIMPLKPTEP-SSFTEIFGELHFKESFVPH 61

Query: 63  ------------------------PMSKGAGD----RRRSYSFSSSSNSESLQLCTEGLG 122
                                   P+S G  +     R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESSNSTSAADDLWKEPLSNGEREPSNFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEGEL------FEDDE----KKQVQYHHHHPSNNLKPGGGMIMRTKSANVD 182
           YESLDDVEDL+G +       ED+E    KKQ+QY       NLKP  GMI RTKSAN++
Sbjct: 122 YESLDDVEDLKGVMDEKEWPKEDEEERTLKKQIQY------PNLKP--GMINRTKSANME 181

Query: 183 HDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPND 225
            DFPPPISCMGK+GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPN+
Sbjct: 182 -DFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNE 241

[Close]

BLAST of Sed0001344.1 vs. NCBI nr
Match: XP_004139585.1 (protein FAF-like, chloroplastic [Cucumis sativus] >XP_031739243.1 protein FAF-like, chloroplastic [Cucumis sativus] >KAE8652852.1 hypothetical protein Csa_022731 [Cucumis sativus] >KGN64947.1 hypothetical protein Csa_022859 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58
Identity = 153/265 (57.74%), Postives = 180/265 (67.92%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFK------ 62
           AACGSL       LPENST  L    SSW QIM LK TE  S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFENPLPENST--LFEHLSSWNQIMPLKPTEP-SSFTEIFGELHFKESFVPH 61

Query: 63  ------------------GDI---PMSKGAGD----RRRSYSFSSSSNSESLQLCTEGLG 122
                              DI   P S G  +     R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEG-----ELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPP 182
           YESLDDVEDL+G     E  ED+E++ ++   ++P  NLKP  GMI RTK AN++ DFPP
Sbjct: 122 YESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYP--NLKP--GMINRTKLANME-DFPP 181

Query: 183 PISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREA 225
           PISCMGK+GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPN+QTRE 
Sbjct: 182 PISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREG 241

[Close]

BLAST of Sed0001344.1 vs. NCBI nr
Match: XP_038894576.1 (uncharacterized protein LOC120083094 [Benincasa hispida])

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58
Identity = 153/267 (57.30%), Postives = 177/267 (66.29%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGD-IPM 62
           AACGSL       LPE+ T L   T SSW QIM LK TEQ S+FT+IFGEL FK   +P 
Sbjct: 2   AACGSLQHIFENPLPESPTLL--ETLSSWNQIMPLKPTEQ-SSFTEIFGELHFKESFVPH 61

Query: 63  SKGA------------------------GDR------RRSYSFSSSSNSESLQLCTEGLG 122
           S  +                        G+R      R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESLNSPSTDDLWKEPSFSNGERESSSFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEGEL------FEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFP 182
           YESLDDVEDL+  +       ED+E+  ++    HPS  LKP  GMI RTKSAN + DFP
Sbjct: 122 YESLDDVEDLKEGMDEKVWQREDEEENTLKKQIQHPS--LKP--GMINRTKSANRE-DFP 181

Query: 183 PPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTRE 226
           PPISCMGK GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVP++QTRE
Sbjct: 182 PPISCMGKNGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPHEQTRE 241

[Close]

BLAST of Sed0001344.1 vs. NCBI nr
Match: XP_022142424.1 (protein FANTASTIC FOUR 3-like [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-56
Identity = 141/264 (53.41%), Postives = 172/264 (65.15%), Query Frame = 0


Query: 1   MAAACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGD-I 60
           MAAACGSL       LPE + +LLE T SSW QI+ +K TEQ S+FT+IFGEL FK   +
Sbjct: 1   MAAACGSLQHIFETPLPEKNPSLLE-TLSSWNQILPVKPTEQ-SSFTEIFGELHFKESFV 60

Query: 61  PMS------------------------------KGAGDRRRSYSFSSSSNSESLQLCTEG 120
           P S                              + +    RS SF SS+NSESLQLCTEG
Sbjct: 61  PPSPSLSPPFTDSNAAAAAVSANSPWKEPFLNGESSSFHGRSNSF-SSTNSESLQLCTEG 120

Query: 121 LGYESLDDVEDLEGELFEDD------------EKKQVQYHHHHPSNNLKPGGGMIMRTKS 180
           LGYESLDDVEDL+GE+ E++            +K+Q+QY       NLKP  GMI R++S
Sbjct: 121 LGYESLDDVEDLKGEMEEEEWQREVEEESVALKKQQIQY------QNLKP--GMIRRSRS 180

Query: 181 ANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHIL 215
           AN+  DFPPPISCMGK+G PW GFKSYRYGGRFILKE+RVPTHEFLHASRENGRLKLHIL
Sbjct: 181 ANM-ADFPPPISCMGKSGMPWVGFKSYRYGGRFILKEIRVPTHEFLHASRENGRLKLHIL 240

[Close]

BLAST of Sed0001344.1 vs. NCBI nr
Match: XP_023542093.1 (protein FAF-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-56
Identity = 138/248 (55.65%), Postives = 158/248 (63.71%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDI--- 62
           AACGSL       LPEN T L   T SSW QI+A+  +EQ S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFETPLPENPTLL--DTLSSWSQIIAVTPSEQQSSFTEIFGELHFKESFVPP 61

Query: 63  -----------------------PMSKG--AGDRRRSYSFSSSSNSESLQLCTEGLGYES 122
                                  P S G  +    RS SF SS+NSESLQLCTEGLGYES
Sbjct: 62  LSPQLSLTESNSPSPAAAAVDIEPSSNGESSSSHGRSNSF-SSTNSESLQLCTEGLGYES 121

Query: 123 LDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKP--GGGMIMRTKSANVDHDFPPPISCMG 182
           LDD EDL+G + E++ +++ +           P    GMI RTKSANVD DFPPPISCMG
Sbjct: 122 LDDGEDLKGGMDEEEWQREEEEEETLKKQIENPIWKPGMIKRTKSANVD-DFPPPISCMG 181

Query: 183 KTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREAAKEEDA 214
            +GKPW GFKSYRYGGRFILKE+RVPTHEFLHASRENGRLKLHILVPN QTREA +E+D 
Sbjct: 182 NSGKPWVGFKSYRYGGRFILKEIRVPTHEFLHASRENGRLKLHILVPNKQTREAKEEDDD 241

[Close]

BLAST of Sed0001344.1 vs. ExPASy Swiss-Prot
Match: Q6NMR8 (Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana OX=3702 GN=FAF3 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04
Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = 0


Query: 22  SSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDRRRSYSFSSSSNSESLQLCTE 81
           S W  + +L      ST T    E          K +    +  S   + + +SL LCTE
Sbjct: 69  SGWSSLQSLSSGSSSSTKTTTSSE----------KESSYYVQRPSSCRALSDQSLALCTE 128

Query: 82  GLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPPPI 141
            LG ES  DV D++ ELF  D + +        +  LK       R +S +   D PPP+
Sbjct: 129 NLGSESGSDVTDID-ELFSLDVQTKNLGETTTETRTLK------SRKRSVS-PSDLPPPL 188

Query: 142 SCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHE-FLHASRENGRLKLHIL---------- 201
           + M   G      + +R  GR ++     P       A R NGRL+L IL          
Sbjct: 189 TTM--RGFQCIQMRPHRENGRLVMTATNAPPRNGCFQADRSNGRLRLSILKDSNEFVENE 248

Query: 202 ---VPNDQTREAAKEEDAKDD 209
              +  ++T E  +EE+ ++D
Sbjct: 249 EETIEPEETEEYEEEEEEEED 249

[Close]

BLAST of Sed0001344.1 vs. ExPASy Swiss-Prot
Match: Q9SFG6 (Protein FANTASTIC FOUR 4 OS=Arabidopsis thaliana OX=3702 GN=FAF4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 50/215 (23.26%), Postives = 89/215 (41.40%), Query Frame = 0


Query: 2   AAACGSLLPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDR 61
           AA+  S  P N ++  +T   SW  + +L  +  +          + K  +P+ +    R
Sbjct: 56  AASLPSSSP-NPSSNSDTNSGSWSFLESLSNSSSND---------KEKKTLPLFQSPSSR 115

Query: 62  RRSYSFSSSSNSESLQLCTEGLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPG 121
           R       + + ESL LCTE LG E+  D+  +  ++F    + Q        S    P 
Sbjct: 116 R-------TLSDESLALCTESLGSETGSDI--IHEDMFSISSELQTM-ETRTTSTTSNPS 175

Query: 122 GGMIMRTKSANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRE 181
                + +  N     PPP++ M   G      KS+R  GR ++   R P        R 
Sbjct: 176 ----RQDRKRNTMASLPPPLTSM--IGFDCIEVKSHRENGRLVMMATRPPPRNRCLQDRS 235

Query: 182 NGRLKLHILVPNDQTREAAKEEDAKDDHHHPDDSI 217
           NG ++L IL+ +D   E   +E+ +++     +++
Sbjct: 236 NGCVRLAILIDSDDHIETETKEEKEEEEEETIETV 244

[Close]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL
Match: A0A5A7T1P9 (Protein FAF-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002630 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 9.9e-60
Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDI--- 62
           AACGSL       LPEN T L     SSW QIM LK TE  S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFENPLPENPTLL--EHLSSWNQIMPLKPTEP-SSFTEIFGELHFKESFVPH 61

Query: 63  ------------------------PMSKGAGD----RRRSYSFSSSSNSESLQLCTEGLG 122
                                   P+S G  +     R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESSNSTSAADDLWKEPLSNGEREPSNFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEGEL------FEDDE----KKQVQYHHHHPSNNLKPGGGMIMRTKSANVD 182
           YESLDDVEDL+G +       ED+E    KKQ+QY       NLKP  GMI RTKSAN++
Sbjct: 122 YESLDDVEDLKGVMDEKEWPKEDEEERTLKKQIQY------PNLKP--GMINRTKSANME 181

Query: 183 HDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPND 225
            DFPPPISCMGK+GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPN+
Sbjct: 182 -DFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNE 241

[Close]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL
Match: A0A1S3CEL7 (protein FAF-like, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499860 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 9.9e-60
Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDI--- 62
           AACGSL       LPEN T L     SSW QIM LK TE  S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFENPLPENPTLL--EHLSSWNQIMPLKPTEP-SSFTEIFGELHFKESFVPH 61

Query: 63  ------------------------PMSKGAGD----RRRSYSFSSSSNSESLQLCTEGLG 122
                                   P+S G  +     R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESSNSTSAADDLWKEPLSNGEREPSNFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEGEL------FEDDE----KKQVQYHHHHPSNNLKPGGGMIMRTKSANVD 182
           YESLDDVEDL+G +       ED+E    KKQ+QY       NLKP  GMI RTKSAN++
Sbjct: 122 YESLDDVEDLKGVMDEKEWPKEDEEERTLKKQIQY------PNLKP--GMINRTKSANME 181

Query: 183 HDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPND 225
            DFPPPISCMGK+GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPN+
Sbjct: 182 -DFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNE 241

[Close]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL
Match: A0A0A0LVU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166760 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.4e-58
Identity = 153/265 (57.74%), Postives = 180/265 (67.92%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFK------ 62
           AACGSL       LPENST  L    SSW QIM LK TE  S+FT+IFGEL FK      
Sbjct: 2   AACGSLQHIFENPLPENST--LFEHLSSWNQIMPLKPTEP-SSFTEIFGELHFKESFVPH 61

Query: 63  ------------------GDI---PMSKGAGD----RRRSYSFSSSSNSESLQLCTEGLG 122
                              DI   P S G  +     R+S SF SS+NSESLQLCTEGLG
Sbjct: 62  SFSSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSF-SSTNSESLQLCTEGLG 121

Query: 123 YESLDDVEDLEG-----ELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPP 182
           YESLDDVEDL+G     E  ED+E++ ++   ++P  NLKP  GMI RTK AN++ DFPP
Sbjct: 122 YESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYP--NLKP--GMINRTKLANME-DFPP 181

Query: 183 PISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREA 225
           PISCMGK+GKPW GFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPN+QTRE 
Sbjct: 182 PISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREG 241

[Close]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL
Match: A0A6J1CLI0 (protein FANTASTIC FOUR 3-like OS=Momordica charantia OX=3673 GN=LOC111012561 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 141/264 (53.41%), Postives = 172/264 (65.15%), Query Frame = 0


Query: 1   MAAACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGD-I 60
           MAAACGSL       LPE + +LLE T SSW QI+ +K TEQ S+FT+IFGEL FK   +
Sbjct: 1   MAAACGSLQHIFETPLPEKNPSLLE-TLSSWNQILPVKPTEQ-SSFTEIFGELHFKESFV 60

Query: 61  PMS------------------------------KGAGDRRRSYSFSSSSNSESLQLCTEG 120
           P S                              + +    RS SF SS+NSESLQLCTEG
Sbjct: 61  PPSPSLSPPFTDSNAAAAAVSANSPWKEPFLNGESSSFHGRSNSF-SSTNSESLQLCTEG 120

Query: 121 LGYESLDDVEDLEGELFEDD------------EKKQVQYHHHHPSNNLKPGGGMIMRTKS 180
           LGYESLDDVEDL+GE+ E++            +K+Q+QY       NLKP  GMI R++S
Sbjct: 121 LGYESLDDVEDLKGEMEEEEWQREVEEESVALKKQQIQY------QNLKP--GMIRRSRS 180

Query: 181 ANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHIL 215
           AN+  DFPPPISCMGK+G PW GFKSYRYGGRFILKE+RVPTHEFLHASRENGRLKLHIL
Sbjct: 181 ANM-ADFPPPISCMGKSGMPWVGFKSYRYGGRFILKEIRVPTHEFLHASRENGRLKLHIL 240

[Close]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL
Match: A0A6J1G079 (uncharacterized protein LOC111449517 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449517 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 136/241 (56.43%), Postives = 157/241 (65.15%), Query Frame = 0


Query: 3   AACGSL-------LPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDI--- 62
           AACGSL       LPEN T L   T SSW QI+A+  +EQ S+FT+IFGEL FK      
Sbjct: 74  AACGSLQHIFETPLPENPTLL--DTLSSWSQIIAVTPSEQQSSFTEIFGELHFKESFVPP 133

Query: 63  -------------------------PMSKG--AGDRRRSYSFSSSSNSESLQLCTEGLGY 122
                                    P+S G  +    RS SF SS+NSESLQLCTEGLGY
Sbjct: 134 LSPQLSLTESNSPSPAAVGIIPWKEPLSNGESSSSHGRSNSF-SSTNSESLQLCTEGLGY 193

Query: 123 ESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKP--GGGMIMRTKSANVDHDFPPPISC 182
           ESLDD EDL+G + E++ +++ +           P    GMI RTKSANVD DFPPPISC
Sbjct: 194 ESLDDGEDLKGGMDEEEWQREEEEEETLKKQIQNPIWKPGMIKRTKSANVD-DFPPPISC 253

Query: 183 MGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREAAKEE 205
           MG +GKPW GFKSYRYGGRFILKE+RVPTHEFLHASRENGRLKLHILVPN QTR+A +E+
Sbjct: 254 MGNSGKPWVGFKSYRYGGRFILKEIRVPTHEFLHASRENGRLKLHILVPNKQTRDAKEED 310

[Close]

BLAST of Sed0001344.1 vs. TAIR 10
Match: AT5G22390.1 (Protein of unknown function (DUF3049) )

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-18
Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 0


Query: 15  ALLETTFSS--WGQIMALKQTEQHS----TFTQIFGELRFKGDIPMSKGAGDRRRSYSFS 74
           + L+T  SS  W     L  T  H      FT+IFGEL F+              SY  +
Sbjct: 22  SFLDTLSSSSPWNPSKGLHVTTHHDETPPPFTEIFGELHFR---------ESSHSSYEKT 81

Query: 75  SSSNSESLQLCTEGLGYESLDDVED--LEGELFEDDEKKQVQYHHHHPSNNLKPGGGMIM 134
           S+ NS SLQLCTEGLG ES   +ED  + G+   DD++ +V+       N          
Sbjct: 82  SAENS-SLQLCTEGLGSESYYGLEDEKVNGDGDGDDDEIEVK----GKDNGSNDEEEWEP 141

Query: 135 RTKSANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLK 194
           R K      ++PP ++ M         FK+YR  GR +L+EVR+P  EFL ASRE+GRL+
Sbjct: 142 RRKERK---EYPPAMTRM--------SFKTYRKEGRLVLEEVRIPRREFLRASREDGRLR 201

Query: 195 LHILVPNDQTREAAKEEDAKDDHHHPDD 215
           L ++ P D   E  +EE+ KD H   D+
Sbjct: 202 LKLVQPEDDHDE--EEENEKDKHVDEDE 202

[Close]

BLAST of Sed0001344.1 vs. TAIR 10
Match: AT1G22110.1 (structural constituent of ribosome )

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-07
Identity = 48/166 (28.92%), Postives = 73/166 (43.98%), Query Frame = 0


Query: 66  SFSSSSNSESLQLCTEGLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPGG-GM 125
           S  S ++S S     + +G ES  D+      L  D+    V        +  + GG   
Sbjct: 36  SMLSRTSSSSSSAVGDYIGTESCFDI------LSADEGNDVVSVASEPVKSRFRYGGRRR 95

Query: 126 IMRTKSANVDHDFPPPISCMGKTGK-----PWAGFKSYRYGGRFILKEVRVPTHEFLHAS 185
             R   A    +FPPPI  + +TG      PW   +     GR IL+E +V  HE+  A+
Sbjct: 96  EEREARAAAAREFPPPIPLLAQTGNLLPHMPWVLKRVVTSDGRLILREEKVRHHEYFRAN 155

Query: 186 RENGRLKLHILVPNDQTREAAKE------EDAKDDHHHPDDSIDKC 220
           R NGRL LH++  +D   +  +E      +D +DD    D+  D+C
Sbjct: 156 RSNGRLTLHLVPLDDDVFDLPQEPSHYQSDDEEDDDECDDE--DEC 193

[Close]

BLAST of Sed0001344.1 vs. TAIR 10
Match: AT5G19260.1 (Protein of unknown function (DUF3049) )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = 0


Query: 22  SSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDRRRSYSFSSSSNSESLQLCTE 81
           S W  + +L      ST T    E          K +    +  S   + + +SL LCTE
Sbjct: 69  SGWSSLQSLSSGSSSSTKTTTSSE----------KESSYYVQRPSSCRALSDQSLALCTE 128

Query: 82  GLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPPPI 141
            LG ES  DV D++ ELF  D + +        +  LK       R +S +   D PPP+
Sbjct: 129 NLGSESGSDVTDID-ELFSLDVQTKNLGETTTETRTLK------SRKRSVS-PSDLPPPL 188

Query: 142 SCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHE-FLHASRENGRLKLHIL---------- 201
           + M   G      + +R  GR ++     P       A R NGRL+L IL          
Sbjct: 189 TTM--RGFQCIQMRPHRENGRLVMTATNAPPRNGCFQADRSNGRLRLSILKDSNEFVENE 248

Query: 202 ---VPNDQTREAAKEEDAKDD 209
              +  ++T E  +EE+ ++D
Sbjct: 249 EETIEPEETEEYEEEEEEEED 249

[Close]

BLAST of Sed0001344.1 vs. TAIR 10
Match: AT3G06020.1 (Protein of unknown function (DUF3049) )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 50/215 (23.26%), Postives = 89/215 (41.40%), Query Frame = 0


Query: 2   AAACGSLLPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDR 61
           AA+  S  P N ++  +T   SW  + +L  +  +          + K  +P+ +    R
Sbjct: 56  AASLPSSSP-NPSSNSDTNSGSWSFLESLSNSSSND---------KEKKTLPLFQSPSSR 115

Query: 62  RRSYSFSSSSNSESLQLCTEGLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPG 121
           R       + + ESL LCTE LG E+  D+  +  ++F    + Q        S    P 
Sbjct: 116 R-------TLSDESLALCTESLGSETGSDI--IHEDMFSISSELQTM-ETRTTSTTSNPS 175

Query: 122 GGMIMRTKSANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRE 181
                + +  N     PPP++ M   G      KS+R  GR ++   R P        R 
Sbjct: 176 ----RQDRKRNTMASLPPPLTSM--IGFDCIEVKSHRENGRLVMMATRPPPRNRCLQDRS 235

Query: 182 NGRLKLHILVPNDQTREAAKEEDAKDDHHHPDDSI 217
           NG ++L IL+ +D   E   +E+ +++     +++
Sbjct: 236 NGCVRLAILIDSDDHIETETKEEKEEEEEETIETV 244

The following BLAST results are available for this feature:

BLAST of Sed0001344.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461212.1	2.0e-59	57.41	PREDICTED: protein FAF-like, chloroplastic [Cucumis melo] >KAA0035517.1 protein ...	[more]
XP_004139585.1	5.0e-58	57.74	protein FAF-like, chloroplastic [Cucumis sativus] >XP_031739243.1 protein FAF-li...	[more]
XP_038894576.1	5.0e-58	57.30	uncharacterized protein LOC120083094 [Benincasa hispida]	[more]
XP_022142424.1	4.7e-56	53.41	protein FANTASTIC FOUR 3-like [Momordica charantia]	[more]
XP_023542093.1	6.2e-56	55.65	protein FAF-like, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0001344.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMR8	2.0e-04	26.87	Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana OX=3702 GN=FAF3 PE=2 SV=1	[more]
Q9SFG6	4.4e-04	23.26	Protein FANTASTIC FOUR 4 OS=Arabidopsis thaliana OX=3702 GN=FAF4 PE=2 SV=1	[more]

BLAST of Sed0001344.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1P9	9.9e-60	57.41	Protein FAF-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002...	[more]
A0A1S3CEL7	9.9e-60	57.41	protein FAF-like, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499860 PE=3 SV=...	[more]
A0A0A0LVU3	2.4e-58	57.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166760 PE=3 SV=1	[more]
A0A6J1CLI0	2.3e-56	53.41	protein FANTASTIC FOUR 3-like OS=Momordica charantia OX=3673 GN=LOC111012561 PE=...	[more]
A0A6J1G079	3.0e-56	56.43	uncharacterized protein LOC111449517 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0001344.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22390.1	9.3e-18	36.54	Protein of unknown function (DUF3049)	[more]
AT1G22110.1	2.5e-07	28.92	structural constituent of ribosome	[more]
AT5G19260.1	1.4e-05	26.87	Protein of unknown function (DUF3049)	[more]
AT3G06020.1	3.1e-05	23.26	Protein of unknown function (DUF3049)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 137..188 e-value: 4.5E-20 score: 71.6
IPR021410	The fantastic four family	PANTHER	PTHR33155	FANTASTIC FOUR-LIKE PROTEIN (DUF3049)	coord: 8..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..218
None	No IPR available	PANTHER	PTHR33155:SF9	FANTASTIC FOUR-LIKE PROTEIN (DUF3049)	coord: 8..207

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0001344	Sed0001344	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001344.1-exon	Sed0001344.1-exon-LG11:27960831..27962124	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001344.1-three_prime_utr	Sed0001344.1-three_prime_utr-LG11:27960831..27961162	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001344.1-cds	Sed0001344.1-cds-LG11:27961163..27961846	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001344.1-five_prime_utr	Sed0001344.1-five_prime_utr-LG11:27961847..27962124	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0001344.1	Sed0001344.1-protein	polypeptide