Sed0000956.1 (mRNA) Chayote v1

Overview


Name	Sed0000956.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 28427738 .. 28430888 (-)
Sequence length	315
RNA-Seq Expression	Sed0000956.1
Synteny	Sed0000956.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCTTCTCCTTATCAATTTTTCATCTCAGAGCCATCCTTAGCTACTTCGTCTCCAATTCAACGCCTTCAAAATCACCCGCCACTCCTTCGATTCTCCATCATGCATGGTCAAGATGCAGGTAATTTCTTCTTCATCTTCCAATTTCTTCAAATTTATTCCTTACTGTGCACGCTGACGAGTTGATAGTTCGAGTGGCAACAAGGTTCAACTTCCGGCAATGAACTTGAGCAACGATTGGGTGGTAAGCGATTTCTTTCACTCCCTATGCTCTTTGTTTTCGTGCAGGGTGAATTGGTATTTATTCCGGCGAAAAATAAAACTAAAGATTGGAGCTAAGTTACCTCCTTTTGAGTTATTAACATTTTCAAGTTTGTTGTCTCCATCTCTTGATTTTCAAAATACTCTGATTCTACATCTTTCATTCGTGTACTTTCTTCACCAGGTATTGTTACAGTTTTTTTTTCCTCTAAAATTTGCAATCTCTTAATGTTATGTGTTTATGTTATCATACCAGTTGCTGTTTCTTTTCATAAAAATCAAATATAAATCTCTTTTTAGATGAAATAAAATCACCCGGATCGAATTGAGACAAAAGGGGATAAATTATGAAATATTTGTTGAGTGAGTACTAACTGTTTGTGAAAATGCCAAAGGGAATTTTGAGATGGAAATTAAAAGAAATTACCTCTAGGTAATGTGAAGCCAATGATTTCTTGCCTTGTTTTGTTTTGCTATCCATTTTTGTTGTAGTGAAGTTGTAAGGCTTGTAAGACTCTCACTGGTATTAGTACAATGGAACAACTTGACATGGGGAAAAGAGGAAAGGGTAAATTCGTTAGTATGAAGTTGATCTTTGATATTTGGTATCTATTCTTCTAGATTTATGTATGAAGTTTAGTTGGTATTTCATAGTGTATGAATGGGTAGACAAACTAATCTGTTAATGGCCTGCAGTTTGGACAGTAAAAATCCATGTTAATATTTCTTATTACTTCTGTTTTGTTTTTGGTATTTTTGTTCTTATCAATAAAATTTATTAAATGGTTTTCTAAATGACCTTTCTAGTTATGAGAGTACAAGAAGAATGTAAGTGGCTACATGATTTCTATCCATTTTCTCTTTTATTTTGAGTGGTTTTTCTTTAAAGATAGATTTTATTTTAACCTTTATATAATGGATGAAGTTATCTTCTTTATTTATTCATCAATTTGGTTTTGTGTTACCTTGTATCTCTTGAGGTAAAATACATTTTAGTTTAGCATGTTGAACAGTTATAATAAAAGCTACACACTTGGCTTGTTTTAGCTCTTGACTTTGATTCTTATAATAGGGTTTCTTTTATTTTTTGGCTACAATTAATTGTATCGGAAGGCAGGCCCATGTGATGCGTTTGAAGTGGGTGCAGTGCTGGAGCATGAGAAATGACAAGCCCTATCTAATACTTTAATGTCAAGCTAACTAGTGTTCAAAATGAGATTCTGAAGAAGAATTTTGTCTCGTGGATGGAGTTTTGAGGGGCTTCATGTTCCCTACAAGGTAAAACCTTTTGTTTTGTTGCCAAACTTGTTGAACTTATTGAATAAATAATTAATCACACACTGAGATCTACTGCTAATGTAGTTTGATTATGGTAATTAGCATTTGTTCTGACACTAGTCTACATTAACTCCTGCTTGAGAAGTTAATCCATGATGGTTGTCAATGAAACTAGTAGAAAATTAATTCTTAAGTAGGTGGTCACAATAAAATAAATCCATAACTTCTTAGAAGCCCTCTTAACCACTAGTCAATCCATGATGGCTATTCCATGCCACCTCAAGGTGTTAGGATTGCTTACAATTCATTTGATTTTCACAAGTTATCAGATCAAATAACAAAACAAAACCCTGTAAAAATAAGATGAACTCAAGAATGGTTGTGTATAAACTATTGACGTAGGATAAAATGTGTAATAAAAAAACTCAAGAATGGTTGTGTATAAACTATTGCCTTAGGATAAAATGTGTAATAAAAAAAGTAGACACACATACTAATGCTCTAATTGATATTCTTGCTATTCTCAAAAAAAAAAAAAGATATTCTTGCTATGTTTTTACTGTCCAAGCTTTCAAATCAAGGCCTTCTTTTCGTCCTCTCCAAGTGCATTGAACATCAAAAAGCTTTTATGACAATATCATCTTCAAAATAAATTATAAATCAGTCATACAGTGTAACAATAAAATGCACTACATATTCACATTGTTTATTCACGAAAAGAACTCCTTTGCCATGCTTTTTTACTTTCTTCTTCTTATTATTTTTAACACATTGTAGTTGTATGATGTCTTCTGATAAATTCAATTATTTTAACACATTTTACCTTAGTTCTTTGTTCTTCTCCATGTGTTTGAAATTTCCAAGATATATTTTCTTGGATATTCTATATTCGAAACTCACAAGTGAATTTAATTATAAATCTCTATTTTTGTGGATTTTTGAAGAAAGAAAAGCTAAGATTTTTTAAGAATAAAGAAACATGAATTTATTCATTTGAAAAGAACAGATGGAAAATTGAAAACTATTCTCATAGGATGGAGCTTCTTATCGGAGTTTTCAATAGGAAATAGCAGAAGAACATTGTTGATTATGTTAACCATTTACAAAACATGGGACAAAGAAGCAACTTGAAAGTATCAATTCTTCACGAACCTTTGCTTTTCTAATTTACTTATTTCCTTTGCTAAGTTCAAGCAATATATGTTCATTAATTTTTTAAGTATCAATTCTTGCATGTATTCAATAGTTCGTGTGCTTACTCTGAAATTAAAAAGTGGGTGAGAAGCAAAAGCTTTATTGGCCATTCTAATTATGTTATAATTATGGGGCTAACTCATTTTTCTTAATGTGTGGTTCAGGTTTTGTTTACTTGCAAGAAGATTGGTGTTGGATTGGGTAAGGGGAAGAAATTTAGATATTCGACAAACCAAGTTGCTGAAAATGCACTTCATAACTTGGCAGGTAAAAAATTATTTGTTTATTTGTTTGCTCACCAACATCATTCACTTCGAATTTTACTCGTGTATGTTTCACATTTGCTTTTACTGCCTTTTTCCTTGTAATTCTTTCTTTTTTCTTAGCTATTTTTTTTTCATAGGATTGTTATAG

mRNA sequence

ATGCCTTTCTTCTCCTTATCAATTTTTCATCTCAGAGCCATCCTTAGCTACTTCGTCTCCAATTCAACGCCTTCAAAATCACCCGCCACTCCTTCGATTCTCCATCATGCATGGTCAAGATGCAGTGAAGTTGTAAGGCTTGTAAGACTCTCACTGGTATTAGTACAATGGAACAACTTGACATGGGGAAAAGAGGAAAGGGTTTTGTTTACTTGCAAGAAGATTGGTGTTGGATTGGGTAAGGGGAAGAAATTTAGATATTCGACAAACCAAGTTGCTGAAAATGCACTTCATAACTTGGCAGGATTGTTATAG

Coding sequence (CDS)

ATGCCTTTCTTCTCCTTATCAATTTTTCATCTCAGAGCCATCCTTAGCTACTTCGTCTCCAATTCAACGCCTTCAAAATCACCCGCCACTCCTTCGATTCTCCATCATGCATGGTCAAGATGCAGTGAAGTTGTAAGGCTTGTAAGACTCTCACTGGTATTAGTACAATGGAACAACTTGACATGGGGAAAAGAGGAAAGGGTTTTGTTTACTTGCAAGAAGATTGGTGTTGGATTGGGTAAGGGGAAGAAATTTAGATATTCGACAAACCAAGTTGCTGAAAATGCACTTCATAACTTGGCAGGATTGTTATAG

Protein sequence

MPFFSLSIFHLRAILSYFVSNSTPSKSPATPSILHHAWSRCSEVVRLVRLSLVLVQWNNLTWGKEERVLFTCKKIGVGLGKGKKFRYSTNQVAENALHNLAGLL

Homology

The following BLAST results are available for this feature:

BLAST of Sed0000956.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000956.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000956.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000956.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000956	Sed0000956	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000956.1-exon	Sed0000956.1-exon-LG09:28427738..28427748	exon
Sed0000956.1-exon	Sed0000956.1-exon-LG09:28427885..28427987	exon
Sed0000956.1-exon	Sed0000956.1-exon-LG09:28430056..28430131	exon
Sed0000956.1-exon	Sed0000956.1-exon-LG09:28430764..28430888	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000956.1-cds	Sed0000956.1-cds-LG09:28427738..28427748	CDS
Sed0000956.1-cds	Sed0000956.1-cds-LG09:28427885..28427987	CDS
Sed0000956.1-cds	Sed0000956.1-cds-LG09:28430056..28430131	CDS
Sed0000956.1-cds	Sed0000956.1-cds-LG09:28430764..28430888	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000956.1	Sed0000956.1-protein	polypeptide