Sed0000935.1 (mRNA) Chayote v1

Overview


Name	Sed0000935.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Location	LG05: 204292 .. 206337 (+)
Sequence length	1155
RNA-Seq Expression	Sed0000935.1
Synteny	Sed0000935.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGCTGCTCTTGCTTGCTCATGTTCCCTCTTCTACTCTAAACCCTCCATCCATCCAATTCAACCTTGTGTTCCTCCTCGTCTGTCCATTTCTCACCACCCTTGTGCTGCTCTTTCATCCTCTTTTTCCATTTGCTGTCCGTCCACTTCCAGACCACCCTCCAACCGTTGCAGCTCTTTCACTGCTCATGCCACACCTGCTGCCTCCTCCCCTGCTGCCCACAAAAAGAAGGTCTTGATTGTCAACACCAACAGCGGCGGACATGCAGTCATTGGCTTCTACTTCGCCAAACAGCTTCTGGCTTCCGGCCATGACGTCACAATTCTCACTCTCGGCCAACAGGATTCAGACAAGATGAACAAGCCTCCATTTAACAGATTCTCGGTTACTACTACTTTCTAGACTTTACTCTTTTTAACCCCCATGTTCTCTTATGCTTTGAACGCATTAATGCCCTGCGATTTGCAGTCGGGAGTCTCGCTGCCCAGTCAGCAAGTGCAGGTGTAGGAGCAACGCCCCCGTTTGCGAAAACACATTTGCGTACTTAGCATTCTGTTGTGCGTTTAGCATCTATTCCACACCTGCTCACCGCACTCCGTAGAGCATTATGTTTTTGCAGCGCGTCCATGCATCCGCATTTTGTTTATTGCTTACGCATTCTGTAATAGGGTTTAATTAGGGTGTCTATATAAACTCGAATTAAACCCTAGCCGTATTATGACATAATCTCTGTATCTGTAAATTTCCGTCTCCGTGGACTAGCCAACATAACGTTGATGAACCACATAAATTCTGTGTGTTGTTTATTCTTCGTCTTTCACGTTTATCGTTATCTGTTTTCATATTTTCGTTTATCGATTGTTGATTTCCGTTTTCATAACACCCCAATATCCAACAATGTGTCTTTTATTAACCATTGATCAACGTTGTTTAGGAAATTGTGAGTGCGGGAGGCAACACCGTGTGGGGGGATCCAGCAGAAGTTGCCAACGCTGTGGCTGGAGCATCATTTGATGTCGTCTTAGATAACAATGGCAAGGATATTGATACTGTCAGGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACGGATGAGCCTCCTCATGTTGAAGGGGTAAACTTTTTTACTTTCAATGAAATCCTGTCAGCATATTTCATAAATCTGCTAAATCTGCAAATTTCTGTGGCAGGATGCTGTTAAAGCTAGTGCTGGCCATGTTGCTGTTGAAGAATATATTGCAGAGGTTTTTGGCAGCTGGGCTGTTTTCCGTCCACAGTACATAATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTAAGTGTCAACCTACATCTTTCTCAATCAGTCAAGCGAGTATTTAGACATTTCTAACTTTGATTGTTAAGCTCACGGACTTGATCAATACCCAATGCAGGAATTGTCCGAGACAGACCGATTCTGATTCCAGGCTCCGGGATGCAGCTGTCGAACATCGCTCATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAACCAGATGAGGCACACTCCAACATATTCAACTGTGTAAGTGATCGTGCCGTAACTCTTGATGGAATGGCCAAGCTATGTGCTAAAGCAGCAGGCCGTTCCGTTAATATTGTTCACTATGATCCAAAGTCAGTTGGGATTGACGCAAAGAAAGCATTTCCTTTCAGGAATATGGTGAGTAAAATGAAGTCGTTTCTTTGGTACTTAGATGGGGGAACGTAGAAGATTCAGAAGAAGAAAAAAAAGTGTTTGATATCGAATTTATGATGTTTTCTGCAGCATTTCTACGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAAGTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAAGATATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

mRNA sequence

ATGGCTGCTGCTGCTCTTGCTTGCTCATGTTCCCTCTTCTACTCTAAACCCTCCATCCATCCAATTCAACCTTGTGTTCCTCCTCGTCTGTCCATTTCTCACCACCCTTGTGCTGCTCTTTCATCCTCTTTTTCCATTTGCTGTCCGTCCACTTCCAGACCACCCTCCAACCGTTGCAGCTCTTTCACTGCTCATGCCACACCTGCTGCCTCCTCCCCTGCTGCCCACAAAAAGAAGGTCTTGATTGTCAACACCAACAGCGGCGGACATGCAGTCATTGGCTTCTACTTCGCCAAACAGCTTCTGGCTTCCGGCCATGACGTCACAATTCTCACTCTCGGCCAACAGGATTCAGACAAGATGAACAAGCCTCCATTTAACAGATTCTCGGAAATTGTGAGTGCGGGAGGCAACACCGTGTGGGGGGATCCAGCAGAAGTTGCCAACGCTGTGGCTGGAGCATCATTTGATGTCAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACGGATGAGCCTCCTCATGTTGAAGGGGATGCTGTTAAAGCTAGTGCTGGCCATGTTGCTGTTGAAGAATATATTGCAGAGGTTTTTGGCAGCTGGGCTGTTTTCCGTCCACAGTACATAATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATTGTCCGAGACAGACCGATTCTGATTCCAGGCTCCGGGATGCAGCTGTCGAACATCGCTCATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAACCAGATGAGGCACACTCCAACATATTCAACTGTGTAAGTGATCGTGCCGTAACTCTTGATGGAATGGCCAAGCTATGTGCTAAAGCAGCAGGCCGTTCCGTTAATATTGTTCACTATGATCCAAAGTCAGTTGGGATTGACGCAAAGAAAGCATTTCCTTTCAGGAATATGCATTTCTACGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAAGTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAAGATATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

Coding sequence (CDS)

ATGGCTGCTGCTGCTCTTGCTTGCTCATGTTCCCTCTTCTACTCTAAACCCTCCATCCATCCAATTCAACCTTGTGTTCCTCCTCGTCTGTCCATTTCTCACCACCCTTGTGCTGCTCTTTCATCCTCTTTTTCCATTTGCTGTCCGTCCACTTCCAGACCACCCTCCAACCGTTGCAGCTCTTTCACTGCTCATGCCACACCTGCTGCCTCCTCCCCTGCTGCCCACAAAAAGAAGGTCTTGATTGTCAACACCAACAGCGGCGGACATGCAGTCATTGGCTTCTACTTCGCCAAACAGCTTCTGGCTTCCGGCCATGACGTCACAATTCTCACTCTCGGCCAACAGGATTCAGACAAGATGAACAAGCCTCCATTTAACAGATTCTCGGAAATTGTGAGTGCGGGAGGCAACACCGTGTGGGGGGATCCAGCAGAAGTTGCCAACGCTGTGGCTGGAGCATCATTTGATGTCAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACGGATGAGCCTCCTCATGTTGAAGGGGATGCTGTTAAAGCTAGTGCTGGCCATGTTGCTGTTGAAGAATATATTGCAGAGGTTTTTGGCAGCTGGGCTGTTTTCCGTCCACAGTACATAATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATTGTCCGAGACAGACCGATTCTGATTCCAGGCTCCGGGATGCAGCTGTCGAACATCGCTCATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAACCAGATGAGGCACACTCCAACATATTCAACTGTGTAAGTGATCGTGCCGTAACTCTTGATGGAATGGCCAAGCTATGTGCTAAAGCAGCAGGCCGTTCCGTTAATATTGTTCACTATGATCCAAAGTCAGTTGGGATTGACGCAAAGAAAGCATTTCCTTTCAGGAATATGCATTTCTACGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAAGTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAAGATATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

Protein sequence

MAAAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDVSSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA

Homology

[Close]

BLAST of Sed0000935.1 vs. NCBI nr
Match: XP_022155645.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica charantia])

HSP 1 Score: 588.6 bits (1516), Expect = 4.0e-164
Identity = 314/409 (76.77%), Postives = 335/409 (81.91%), Query Frame = 0


Query: 4   AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPP 63
           AALA SCSLF S PSIH + P V    PRLS+S    +ALSS+FSI       PS SRP 
Sbjct: 2   AALASSCSLFSSTPSIH-JPPSVSPYLPRLSLSSP--SALSSTFSISHSFPSFPSISRP- 61

Query: 64  SNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQ 123
            +  SSFT  AT      A +KKKVLIVNTNSGGHA+IGFYFAKQLL SGH+VTILT+G+
Sbjct: 62  -SNVSSFTLRAT-----SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGE 121

Query: 124 QDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV----------------- 183
           Q SDKMNKPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                 
Sbjct: 122 QGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVID 181

Query: 184 ---SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQY 243
              SSGVKQFLFISSAGIYKPTDEPPHVEGD V A+A HV VE+YIAEVFGSWA+FRPQY
Sbjct: 182 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQY 241

Query: 244 IIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI 303
           +IGSGNNKDCEEWFFDRIVRDRP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNI
Sbjct: 242 MIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI 301

Query: 304 FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQD 363
           FNCVS RAVTLDGMAKLCA+AAGRSV IVHYDPK+VGIDAKKAFPFR  HFYAEPRAAQD
Sbjct: 302 FNCVSXRAVTLDGMAKLCAQAAGRSVKIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQD 361

Query: 364 ILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           ILGWK  T LP+DLKERFEEYVKIGRDKK I+F+LDDKILESLKVPVAA
Sbjct: 362 ILGWKGXTYLPQDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 400

[Close]

BLAST of Sed0000935.1 vs. NCBI nr
Match: XP_038888331.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 588.2 bits (1515), Expect = 5.2e-164
Identity = 314/408 (76.96%), Postives = 334/408 (81.86%), Query Frame = 0


Query: 4   AALACSCSLFYSKPSIHPIQPCVP--PRLSIS--HHPCAALSSSFSICCPSTSRP---PS 63
           AALA S SLF SKPSIH      P  P LS+S   HP + LSSS SI     S P   PS
Sbjct: 2   AALASSSSLFSSKPSIHLPSSLSPSFPLLSLSPISHP-SPLSSSLSISHSFLSYPSFRPS 61

Query: 64  NRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQ 123
           N C SF+  AT      +  KKKVLIVNTNSGGHAVIGFYFAKQLL SGH+VTILT+G++
Sbjct: 62  NVC-SFSVRAT------SLDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEE 121

Query: 124 DSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV------------------ 183
            SDKM KPPFNRFSEIVS GG TVWGDPAE+   VAGASFDV                  
Sbjct: 122 SSDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRPVIDW 181

Query: 184 --SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYI 243
             SSGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVFGSWA+FRPQY+
Sbjct: 182 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYIAEVFGSWAIFRPQYM 241

Query: 244 IGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIF 303
           IGSGNNKDCEEWFFDRIVR+RP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIF
Sbjct: 242 IGSGNNKDCEEWFFDRIVRNRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF 301

Query: 304 NCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDI 363
           NCVSDRAVTLDGMAKLCA+AAGR V+IVH+DPK+VG+DAKKAFPFRNMHFYAEPRAAQDI
Sbjct: 302 NCVSDRAVTLDGMAKLCAQAAGRPVDIVHFDPKAVGVDAKKAFPFRNMHFYAEPRAAQDI 361

Query: 364 LGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           LGWK TTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 LGWKGTTNLPEDLKERFEEYVKIGRDKKPIKFELDDKILESLKVPVAA 401

[Close]

BLAST of Sed0000935.1 vs. NCBI nr
Match: XP_022967430.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima])

HSP 1 Score: 583.6 bits (1503), Expect = 1.3e-162
Identity = 309/405 (76.30%), Postives = 330/405 (81.48%), Query Frame = 0


Query: 3   AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRC 62
           AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R 
Sbjct: 2   AALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSRR 61

Query: 63  SSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSD 122
           S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAKQLL SGH+VTILT+G++ SD
Sbjct: 62  SNVCSFSVRASS---ADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 121

Query: 123 KMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------S 182
           KM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    S
Sbjct: 122 KMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 181

Query: 183 SGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGS 242
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGS
Sbjct: 182 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 241

Query: 243 GNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV 302
           GNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAH+NIFNCV
Sbjct: 242 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCV 301

Query: 303 SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGW 362
           SDRAVTLDGMAKLCA+AAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAAQ+ILGW
Sbjct: 302 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGW 361

Query: 363 KSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           KS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of Sed0000935.1 vs. NCBI nr
Match: XP_022963688.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata])

HSP 1 Score: 583.2 bits (1502), Expect = 1.7e-162
Identity = 306/405 (75.56%), Postives = 331/405 (81.73%), Query Frame = 0


Query: 3   AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRC 62
           AA  + S SLF SKPSIH    + PC+           +AL+SSF+I       P S+R 
Sbjct: 2   AALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSRR 61

Query: 63  SSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSD 122
           S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAKQLL SGH+VTILT+G++ SD
Sbjct: 62  SNVCSFSVRASS---ADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 121

Query: 123 KMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------S 182
           KM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    S
Sbjct: 122 KMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 181

Query: 183 SGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGS 242
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGS
Sbjct: 182 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 241

Query: 243 GNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV 302
           GNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Sbjct: 242 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCV 301

Query: 303 SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGW 362
           SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGW
Sbjct: 302 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW 361

Query: 363 KSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           KS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of Sed0000935.1 vs. NCBI nr
Match: KAG6571471.1 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 579.7 bits (1493), Expect = 1.8e-161
Identity = 306/405 (75.56%), Postives = 330/405 (81.48%), Query Frame = 0


Query: 3   AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRC 62
           AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R 
Sbjct: 2   AALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRR 61

Query: 63  SSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSD 122
           S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFA+QLL SGH+VTILT+G++ SD
Sbjct: 62  SNVCSFSVRASS---ADKKNVLIVNTNSGGHAVIGFYFAEQLLGSGHEVTILTVGEESSD 121

Query: 123 KMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------S 182
           KM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    S
Sbjct: 122 KMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 181

Query: 183 SGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGS 242
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGS
Sbjct: 182 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 241

Query: 243 GNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV 302
           GNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Sbjct: 242 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCV 301

Query: 303 SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGW 362
           SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGW
Sbjct: 302 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW 361

Query: 363 KSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           KS+TNLPEDLKERFEEYVKIGRDKK IKFELDD ILESLKVPVAA
Sbjct: 362 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA 403

[Close]

BLAST of Sed0000935.1 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 5.1e-146
Identity = 272/409 (66.50%), Postives = 310/409 (75.79%), Query Frame = 0


Query: 5   ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFT 64
           A   S SLF+S  +  PI    +PP L    H  +  SSS S    S+S   S+   +F+
Sbjct: 2   AALSSSSLFFSSKTTSPISNLLIPPSL----HRFSLPSSSSSFSSLSSSSSSSSSLLTFS 61

Query: 65  AHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQ 124
              +   S        S    KK VLIVNTNSGGHAVIGFYFAK+LL++GH VTILT+G 
Sbjct: 62  LRTSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGD 121

Query: 125 QDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV----------------- 184
           + S+KM KPPFNRFSEIVS GG TVWG+PA VAN V G +FDV                 
Sbjct: 122 ESSEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVD 181

Query: 185 ---SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQY 244
              SSGVKQFLFISSAGIYK T++PPHVEGDAVKA AGHV VE+Y+AE FG+WA FRPQY
Sbjct: 182 WAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQY 241

Query: 245 IIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI 304
           +IGSGNNKDCEEWFFDRIVRDR + IPGSG+QL+NI+HVRDLSSMLT AV  P+ A  NI
Sbjct: 242 MIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNI 301

Query: 305 FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQD 364
           FNCVSDRAVTLDGMAKLCA AAG++V IVHYDPK++G+DAKKAF FRNMHFYAEPRAA+D
Sbjct: 302 FNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKD 361

Query: 365 ILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           +LGW+S TNLPEDLKERFEEYVKIGRDKK+IKFELDDKILE+LK PVAA
Sbjct: 362 LLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

[Close]

BLAST of Sed0000935.1 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-43
Identity = 115/329 (34.95%), Postives = 167/329 (50.76%), Query Frame = 0


Query: 74  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF 133
           A+ +KK+LI+    GG   IG + ++ L+  GH VT+ T G+    K     +   F  F
Sbjct: 50  ASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADF 109

Query: 134 -SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------------------KQFLFISS 193
            S+I+   G+    D   V ++++   FDV   +                  +Q+++ SS
Sbjct: 110 SSKILHLKGDR--KDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSS 169

Query: 194 AGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEE 253
           AG+Y  +D  PH E DAV   + H   +  E  +     +W   RP YI G  N    EE
Sbjct: 170 AGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEE 229

Query: 254 WFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLD 313
           WFF R+   RPI +P SG+Q+S + HV+DL++   L V   ++A   IFN   ++ VT D
Sbjct: 230 WFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTFD 289

Query: 314 GMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP 373
           G+AK CAKA G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L 
Sbjct: 290 GLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV 349

Query: 374 EDLKERFEEYVKIGRDKKDIKFELDDKIL 376
           E L + +      G  +K+  F  DD IL
Sbjct: 350 EGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

[Close]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL
Match: A0A6J1DN04 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022727 PE=3 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.5e-164
Identity = 314/409 (76.77%), Postives = 335/409 (81.91%), Query Frame = 0


Query: 4   AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPP 63
           AALA SCSLF S PSIH + P V    PRLS+S    +ALSS+FSI       PS SRP 
Sbjct: 2   AALASSCSLFSSTPSIH-LPPSVSPYLPRLSLSSP--SALSSTFSISHSFPSFPSISRP- 61

Query: 64  SNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQ 123
            +  SSFT  AT      A +KKKVLIVNTNSGGHA+IGFYFAKQLL SGH+VTILT+G+
Sbjct: 62  -SNVSSFTLRAT-----SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGE 121

Query: 124 QDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV----------------- 183
           Q SDKMNKPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                 
Sbjct: 122 QGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVID 181

Query: 184 ---SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQY 243
              SSGVKQFLFISSAGIYKPTDEPPHVEGD V A+A HV VE+YIAEVFGSWA+FRPQY
Sbjct: 182 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQY 241

Query: 244 IIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI 303
           +IGSGNNKDCEEWFFDRIVRDRP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNI
Sbjct: 242 MIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI 301

Query: 304 FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQD 363
           FNCVS RAVTLDGMAKLCA+AAGRSV IVHYDPK+VGIDAKKAFPFR  HFYAEPRAAQD
Sbjct: 302 FNCVSXRAVTLDGMAKLCAQAAGRSVKIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQD 361

Query: 364 ILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           ILGWK  T LP+DLKERFEEYVKIGRDKK I+F+LDDKILESLKVPVAA
Sbjct: 362 ILGWKGXTYLPQDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 400

[Close]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL
Match: A0A6J1HUG4 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466971 PE=3 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 6.2e-163
Identity = 309/405 (76.30%), Postives = 330/405 (81.48%), Query Frame = 0


Query: 3   AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRC 62
           AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R 
Sbjct: 2   AALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSRR 61

Query: 63  SSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSD 122
           S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAKQLL SGH+VTILT+G++ SD
Sbjct: 62  SNVCSFSVRASS---ADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 121

Query: 123 KMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------S 182
           KM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    S
Sbjct: 122 KMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 181

Query: 183 SGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGS 242
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGS
Sbjct: 182 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 241

Query: 243 GNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV 302
           GNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAH+NIFNCV
Sbjct: 242 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCV 301

Query: 303 SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGW 362
           SDRAVTLDGMAKLCA+AAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAAQ+ILGW
Sbjct: 302 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGW 361

Query: 363 KSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           KS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL
Match: A0A6J1HIM8 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463943 PE=3 SV=1)

HSP 1 Score: 583.2 bits (1502), Expect = 8.1e-163
Identity = 306/405 (75.56%), Postives = 331/405 (81.73%), Query Frame = 0


Query: 3   AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRC 62
           AA  + S SLF SKPSIH    + PC+           +AL+SSF+I       P S+R 
Sbjct: 2   AALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSRR 61

Query: 63  SSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSD 122
           S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAKQLL SGH+VTILT+G++ SD
Sbjct: 62  SNVCSFSVRASS---ADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 121

Query: 123 KMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------S 182
           KM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    S
Sbjct: 122 KMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 181

Query: 183 SGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGS 242
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGS
Sbjct: 182 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 241

Query: 243 GNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV 302
           GNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Sbjct: 242 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCV 301

Query: 303 SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGW 362
           SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGW
Sbjct: 302 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW 361

Query: 363 KSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           KS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL
Match: A0A5D3E2H3 (Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00590 PE=3 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.6e-161
Identity = 304/406 (74.88%), Postives = 329/406 (81.03%), Query Frame = 0


Query: 4   AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCS 63
           AAL  S SLF SKPSI+   PI P   P         + +SSSFSI   +     S+  S
Sbjct: 2   AALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSS 61

Query: 64  SFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDS 123
           SF      + S  + ++ KKKVLIVNTNSGGHAVIGFYFAK+LL SGH+VTILT+G+Q S
Sbjct: 62  SFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSS 121

Query: 124 DKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV-------------------- 183
           DKMNKPPFNRFSEIVS GG TVWGDPAE+   + GASFDV                    
Sbjct: 122 DKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAK 181

Query: 184 SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIG 243
           SSGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+Y+AEVF SWA+FRPQY+IG
Sbjct: 182 SSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIG 241

Query: 244 SGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 303
           SGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIFNC
Sbjct: 242 SGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 301

Query: 304 VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILG 363
           V+DRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILG
Sbjct: 302 VTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILG 361

Query: 364 WKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           WKSTTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 WKSTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 407

[Close]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL
Match: A0A1S3BLW3 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491274 PE=3 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.6e-161
Identity = 304/406 (74.88%), Postives = 329/406 (81.03%), Query Frame = 0


Query: 4   AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCS 63
           AAL  S SLF SKPSI+   PI P   P         + +SSSFSI   +     S+  S
Sbjct: 2   AALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSS 61

Query: 64  SFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDS 123
           SF      + S  + ++ KKKVLIVNTNSGGHAVIGFYFAK+LL SGH+VTILT+G+Q S
Sbjct: 62  SFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSS 121

Query: 124 DKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV-------------------- 183
           DKMNKPPFNRFSEIVS GG TVWGDPAE+   + GASFDV                    
Sbjct: 122 DKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAK 181

Query: 184 SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIG 243
           SSGVKQFLFISSAGIYKPTDEPPHVEGD VKA AGHV VE+Y+AEVF SWA+FRPQY+IG
Sbjct: 182 SSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIG 241

Query: 244 SGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 303
           SGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIFNC
Sbjct: 242 SGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 301

Query: 304 VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILG 363
           V+DRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILG
Sbjct: 302 VTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILG 361

Query: 364 WKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           WKSTTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKVPVAA
Sbjct: 362 WKSTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 407

[Close]

BLAST of Sed0000935.1 vs. TAIR 10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa )

HSP 1 Score: 518.8 bits (1335), Expect = 3.6e-147
Identity = 272/409 (66.50%), Postives = 310/409 (75.79%), Query Frame = 0


Query: 5   ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFT 64
           A   S SLF+S  +  PI    +PP L    H  +  SSS S    S+S   S+   +F+
Sbjct: 2   AALSSSSLFFSSKTTSPISNLLIPPSL----HRFSLPSSSSSFSSLSSSSSSSSSLLTFS 61

Query: 65  AHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQ 124
              +   S        S    KK VLIVNTNSGGHAVIGFYFAK+LL++GH VTILT+G 
Sbjct: 62  LRTSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGD 121

Query: 125 QDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV----------------- 184
           + S+KM KPPFNRFSEIVS GG TVWG+PA VAN V G +FDV                 
Sbjct: 122 ESSEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVD 181

Query: 185 ---SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQY 244
              SSGVKQFLFISSAGIYK T++PPHVEGDAVKA AGHV VE+Y+AE FG+WA FRPQY
Sbjct: 182 WAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQY 241

Query: 245 IIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI 304
           +IGSGNNKDCEEWFFDRIVRDR + IPGSG+QL+NI+HVRDLSSMLT AV  P+ A  NI
Sbjct: 242 MIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNI 301

Query: 305 FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQD 364
           FNCVSDRAVTLDGMAKLCA AAG++V IVHYDPK++G+DAKKAF FRNMHFYAEPRAA+D
Sbjct: 302 FNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKD 361

Query: 365 ILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA 385
           +LGW+S TNLPEDLKERFEEYVKIGRDKK+IKFELDDKILE+LK PVAA
Sbjct: 362 LLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

[Close]

BLAST of Sed0000935.1 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 176.0 bits (445), Expect = 5.7e-44
Identity = 115/329 (34.95%), Postives = 167/329 (50.76%), Query Frame = 0


Query: 74  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF 133
           A+ +KK+LI+    GG   IG + ++ L+  GH VT+ T G+    K     +   F  F
Sbjct: 50  ASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADF 109

Query: 134 -SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------------------KQFLFISS 193
            S+I+   G+    D   V ++++   FDV   +                  +Q+++ SS
Sbjct: 110 SSKILHLKGDR--KDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSS 169

Query: 194 AGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEE 253
           AG+Y  +D  PH E DAV   + H   +  E  +     +W   RP YI G  N    EE
Sbjct: 170 AGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEE 229

Query: 254 WFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLD 313
           WFF R+   RPI +P SG+Q+S + HV+DL++   L V   ++A   IFN   ++ VT D
Sbjct: 230 WFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTFD 289

Query: 314 GMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP 373
           G+AK CAKA G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L 
Sbjct: 290 GLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV 349

Query: 374 EDLKERFEEYVKIGRDKKDIKFELDDKIL 376
           E L + +      G  +K+  F  DD IL
Sbjct: 350 EGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

The following BLAST results are available for this feature:

BLAST of Sed0000935.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155645.1	4.0e-164	76.77	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica char...	[more]
XP_038888331.1	5.2e-164	76.96	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa...	[more]
XP_022967430.1	1.3e-162	76.30	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxi...	[more]
XP_022963688.1	1.7e-162	75.56	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita mosc...	[more]
KAG6571471.1	1.8e-161	75.56	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucur...	[more]

BLAST of Sed0000935.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYA9	5.1e-146	66.50	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ...	[more]
Q9SA52	8.0e-43	34.95	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ...	[more]

BLAST of Sed0000935.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN04	2.5e-164	76.77	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Momordica ch...	[more]
A0A6J1HUG4	6.2e-163	76.30	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1HIM8	8.1e-163	75.56	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita mo...	[more]
A0A5D3E2H3	2.6e-161	74.88	Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BLW3	2.6e-161	74.88	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo...	[more]

BLAST of Sed0000935.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63140.1	3.6e-147	66.50	chloroplast stem-loop binding protein of 41 kDa	[more]
AT1G09340.1	5.7e-44	34.95	chloroplast RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 77..358 e-value: 2.4E-25 score: 91.2
None	No IPR available	PANTHER	PTHR43725:SF6	CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTIC	coord: 58..382
None	No IPR available	PANTHER	PTHR43725	UDP-GLUCOSE 4-EPIMERASE	coord: 58..382
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 148..278 e-value: 4.3E-6 score: 26.4
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 74..361

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000935	Sed0000935	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000935.1-exon	Sed0000935.1-exon-LG05:204292..204681	exon
Sed0000935.1-exon	Sed0000935.1-exon-LG05:205232..205315	exon
Sed0000935.1-exon	Sed0000935.1-exon-LG05:205376..205456	exon
Sed0000935.1-exon	Sed0000935.1-exon-LG05:205533..205671	exon
Sed0000935.1-exon	Sed0000935.1-exon-LG05:205772..206049	exon
Sed0000935.1-exon	Sed0000935.1-exon-LG05:206155..206337	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000935.1-cds	Sed0000935.1-cds-LG05:204292..204681	CDS
Sed0000935.1-cds	Sed0000935.1-cds-LG05:205232..205315	CDS
Sed0000935.1-cds	Sed0000935.1-cds-LG05:205376..205456	CDS
Sed0000935.1-cds	Sed0000935.1-cds-LG05:205533..205671	CDS
Sed0000935.1-cds	Sed0000935.1-cds-LG05:205772..206049	CDS
Sed0000935.1-cds	Sed0000935.1-cds-LG05:206155..206337	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000935.1	Sed0000935.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003723	RNA binding