Sed0000767.1 (mRNA) Chayote v1

Overview


Name	Sed0000767.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Small polypeptide ROTUNDIFOLIA LIKE 3
Location	LG04: 11429273 .. 11429473 (-)
Sequence length	201
RNA-Seq Expression	Sed0000767.1
Synteny	Sed0000767.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCAGTGTCAATCAAAAAAAGGGAACAGCAGCGAAGAGATGGAAAGATCAGAAGCAGACAAGTTTGGATGTATGGAGATGATCAAAGAGAGCAAGTCCAGGTTCTATATAGCAAGGAGATGTCTCATCATGCTCATCTGCTGGCATAAATATGGTAACAAAACACAACTACAAACTAACAAATATTTTATAAGCTAA

mRNA sequence

ATGGGGCAGTGTCAATCAAAAAAAGGGAACAGCAGCGAAGAGATGGAAAGATCAGAAGCAGACAAGTTTGGATGTATGGAGATGATCAAAGAGAGCAAGTCCAGGTTCTATATAGCAAGGAGATGTCTCATCATGCTCATCTGCTGGCATAAATATGGTAACAAAACACAACTACAAACTAACAAATATTTTATAAGCTAA

Coding sequence (CDS)

ATGGGGCAGTGTCAATCAAAAAAAGGGAACAGCAGCGAAGAGATGGAAAGATCAGAAGCAGACAAGTTTGGATGTATGGAGATGATCAAAGAGAGCAAGTCCAGGTTCTATATAGCAAGGAGATGTCTCATCATGCTCATCTGCTGGCATAAATATGGTAACAAAACACAACTACAAACTAACAAATATTTTATAAGCTAA

Protein sequence

MGQCQSKKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYGNKTQLQTNKYFIS

Homology

[Close]

BLAST of Sed0000767.1 vs. NCBI nr
Match: XP_024005666.1 (uncharacterized protein LOC112082279 [Eutrema salsugineum])

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MGQCQS----------KKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWH 55
          MGQC S          ++G  SE MER++    GC+ M+KE +SRFYIARRC++ML+CWH
Sbjct: 1  MGQCSSTTKMRRKRKREEGGCSESMERNK----GCLAMVKERRSRFYIARRCILMLLCWH 60

[Close]

BLAST of Sed0000767.1 vs. NCBI nr
Match: THU73428.1 (hypothetical protein C4D60_Mb04t22740 [Musa balbisiana])

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MGQCQSK-----KGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYG 54
          MGQC S+     +G    E E + +DK GC+ + KE +SRFYI RRC++ML+CWHKYG
Sbjct: 1  MGQCASRRARWARGRRWREDEDAASDKVGCLAVAKEKRSRFYILRRCVVMLLCWHKYG 58

[Close]

BLAST of Sed0000767.1 vs. NCBI nr
Match: KAG2243374.1 (hypothetical protein Bca52824_094794 [Brassica carinata] >KAG2244067.1 hypothetical protein Bca52824_094100 [Brassica carinata])

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 33/65 (50.77%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1  MGQCQS-----------KKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICW 55
          MGQC S            KG   E  ERS     GC+ M+KE +SRFYIARRC++ML+CW
Sbjct: 1  MGQCSSTTKMRRKRKRENKGGCRESTERSR----GCLMMVKEKRSRFYIARRCILMLLCW 60

[Close]

BLAST of Sed0000767.1 vs. NCBI nr
Match: XP_021274878.1 (uncharacterized protein LOC110409752 [Herrania umbratica])

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-07
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MGQCQSKKGNSSEE--------MERSEADKF-GCMEMIKESKSRFYIARRCLIMLICWHK 54
          MGQC S+   +  E        +  SE+++  GC+ M+KE +SRFYIARRCL+ML+CWHK
Sbjct: 3  MGQCASRAAATGRENWNDCSCRVVSSESERMRGCLAMVKEQRSRFYIARRCLVMLLCWHK 62

[Close]

BLAST of Sed0000767.1 vs. NCBI nr
Match: EOX90732.1 (ROTUNDIFOLIA like 6, putative [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 7.6e-07
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MGQCQSKKGNSSEE--------MERSEADKF-GCMEMIKESKSRFYIARRCLIMLICWHK 54
          MGQC S+   +  E        +  SE+++  GC+ M+KE +SRFYIARRCL+ML+CWHK
Sbjct: 3  MGQCASRAAATGREHWNDCSCSVVSSESERMRGCLAMVKERRSRFYIARRCLVMLLCWHK 62

[Close]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot
Match: Q6IM84 (Small polypeptide DEVIL 17 OS=Arabidopsis thaliana OX=3702 GN=DVL17 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-09
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MGQCQS-----KKGNSSEE--MERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYG 55
          MGQC S     +K    EE   E  E    GC+ M+KE +SRFYIARRC++ML+CWHKY 
Sbjct: 1  MGQCSSATKMRRKRKREEECCRESMERRNKGCLAMVKERRSRFYIARRCILMLLCWHKYA 60

[Close]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot
Match: Q8LE84 (Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 25  CMEMIKESKSRFYIARRCLIMLICWHKY 53
           C  M KE KSRFYI +RC++ML+CWHK+
Sbjct: 113 CRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot
Match: Q6IM86 (Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.7e-05
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 6   SKKGNSSEEMERSEADKFG-CMEMIKESKSRFYIARRCLIMLICWHKY 53
           SK  + S  + +  A   G C ++ KE KSRFYI +RC++ML+CWHK+
Sbjct: 96  SKSSSLSRILSKKGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

[Close]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 7   KKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYGN 55
           K+  SS     S   K+    + KE K+RFYI RRC+ ML+CWHK+G+
Sbjct: 69  KERRSSSSSSSSITQKYS--SLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot
Match: B8A9X1 (Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=RTFL3 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-04
Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 3   QCQSKKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKY 53
           Q Q ++ N+S+ + +       C+E +KE ++RFYI RRC+ ML+CW  Y
Sbjct: 81  QQQQQQSNNSQRLSKK------CVEAVKEHRARFYIVRRCVSMLVCWRDY 124

[Close]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL
Match: M0RWD6 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.7e-08
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MGQCQSK-----KGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYG 54
          MGQC S+     +G    E E + +DK GC+ + KE +SRFYI RRC++ML+CWHKYG
Sbjct: 1  MGQCASRRARRARGRRWREDEDAASDKVGCLAVAKEKRSRFYILRRCVVMLLCWHKYG 58

[Close]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL
Match: A0A4S8KE72 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t22740 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.7e-08
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MGQCQSK-----KGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYG 54
          MGQC S+     +G    E E + +DK GC+ + KE +SRFYI RRC++ML+CWHKYG
Sbjct: 1  MGQCASRRARWARGRRWREDEDAASDKVGCLAVAKEKRSRFYILRRCVVMLLCWHKYG 58

[Close]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL
Match: A0A6J0ZJ08 (uncharacterized protein LOC110409752 OS=Herrania umbratica OX=108875 GN=LOC110409752 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MGQCQSKKGNSSEE--------MERSEADKF-GCMEMIKESKSRFYIARRCLIMLICWHK 54
          MGQC S+   +  E        +  SE+++  GC+ M+KE +SRFYIARRCL+ML+CWHK
Sbjct: 3  MGQCASRAAATGRENWNDCSCRVVSSESERMRGCLAMVKEQRSRFYIARRCLVMLLCWHK 62

[Close]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL
Match: A0A061DFK8 (ROTUNDIFOLIA like 6, putative OS=Theobroma cacao OX=3641 GN=TCM_000120 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-07
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MGQCQSKKGNSSEE--------MERSEADKF-GCMEMIKESKSRFYIARRCLIMLICWHK 54
          MGQC S+   +  E        +  SE+++  GC+ M+KE +SRFYIARRCL+ML+CWHK
Sbjct: 3  MGQCASRAAATGREHWNDCSCSVVSSESERMRGCLAMVKERRSRFYIARRCLVMLLCWHK 62

[Close]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL
Match: A0A3P6AIW3 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T15456Z PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-07
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 1  MGQCQSK----------KGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWH 55
          MGQC S           +G   E M+RS     GC+ M+KE +SRFYIARRC++ML+CWH
Sbjct: 1  MGQCSSTTKMNRKRKRGEGGCRESMKRSR----GCLMMVKEKRSRFYIARRCILMLLCWH 60

[Close]

BLAST of Sed0000767.1 vs. TAIR 10
Match: AT4G35783.1 (ROTUNDIFOLIA like 6 )

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MGQCQS-----KKGNSSEE--MERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYG 55
          MGQC S     +K    EE   E  E    GC+ M+KE +SRFYIARRC++ML+CWHKY 
Sbjct: 1  MGQCSSATKMRRKRKREEECCRESMERRNKGCLAMVKERRSRFYIARRCILMLLCWHKYA 60

[Close]

BLAST of Sed0000767.1 vs. TAIR 10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5 )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 25  CMEMIKESKSRFYIARRCLIMLICWHKY 53
           C  M KE KSRFYI +RC++ML+CWHK+
Sbjct: 113 CRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of Sed0000767.1 vs. TAIR 10
Match: AT3G46613.1 (ROTUNDIFOLIA like 4 )

HSP 1 Score: 47.0 bits (110), Expect = 6.9e-06
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 6   SKKGNSSEEMERSEADKFG-CMEMIKESKSRFYIARRCLIMLICWHKY 53
           SK  + S  + +  A   G C ++ KE KSRFYI +RC++ML+CWHK+
Sbjct: 96  SKSSSLSRILSKKGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

[Close]

BLAST of Sed0000767.1 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 46.6 bits (109), Expect = 9.0e-06
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 7   KKGNSSEEMERSEADKFGCMEMIKESKSRFYIARRCLIMLICWHKYGN 55
           K+  SS     S   K+    + KE K+RFYI RRC+ ML+CWHK+G+
Sbjct: 69  KERRSSSSSSSSITQKYS--SLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of Sed0000767.1 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 45.4 bits (106), Expect = 2.0e-05
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 17 RSEADKFG----CMEMIKESKSRFYIARRCLIMLICWHKYGN 55
          R +  K+G    C  ++KE ++RFYI RRC++MLICW  + N
Sbjct: 32 RQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNN 73

The following BLAST results are available for this feature:

BLAST of Sed0000767.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024005666.1	6.9e-08	51.56	uncharacterized protein LOC112082279 [Eutrema salsugineum]	[more]
THU73428.1	2.0e-07	51.72	hypothetical protein C4D60_Mb04t22740 [Musa balbisiana]	[more]
KAG2243374.1	4.5e-07	50.77	hypothetical protein Bca52824_094794 [Brassica carinata] >KAG2244067.1 hypotheti...	[more]
XP_021274878.1	5.8e-07	50.00	uncharacterized protein LOC110409752 [Herrania umbratica]	[more]
EOX90732.1	7.6e-07	50.00	ROTUNDIFOLIA like 6, putative [Theobroma cacao]	[more]

BLAST of Sed0000767.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IM84	1.7e-09	52.46	Small polypeptide DEVIL 17 OS=Arabidopsis thaliana OX=3702 GN=DVL17 PE=3 SV=1	[more]
Q8LE84	2.6e-05	64.29	Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1	[more]
Q6IM86	9.7e-05	45.83	Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1	[more]
Q8L7D0	1.3e-04	45.83	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
B8A9X1	2.8e-04	40.00	Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

BLAST of Sed0000767.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M0RWD6	9.7e-08	51.72	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A4S8KE72	9.7e-08	51.72	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t22740 PE=4 SV=...	[more]
A0A6J0ZJ08	2.8e-07	50.00	uncharacterized protein LOC110409752 OS=Herrania umbratica OX=108875 GN=LOC11040...	[more]
A0A061DFK8	3.7e-07	50.00	ROTUNDIFOLIA like 6, putative OS=Theobroma cacao OX=3641 GN=TCM_000120 PE=4 SV=1	[more]
A0A3P6AIW3	3.7e-07	50.00	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T15456Z PE=4 SV=...	[more]

BLAST of Sed0000767.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35783.1	1.2e-10	52.46	ROTUNDIFOLIA like 6	[more]
AT5G59510.1	1.8e-06	64.29	ROTUNDIFOLIA like 5	[more]
AT3G46613.1	6.9e-06	45.83	ROTUNDIFOLIA like 4	[more]
AT2G29125.1	9.0e-06	45.83	ROTUNDIFOLIA like 2	[more]
AT3G55515.1	2.0e-05	45.24	ROTUNDIFOLIA like 7	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 30..48 e-value: 8.7E-9 score: 35.0
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 5..59
None	No IPR available	PANTHER	PTHR33102:SF46	DVL17	coord: 5..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000767	Sed0000767	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000767.1-cds	Sed0000767.1-cds-LG04:11429273..11429473	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000767.1-exon	Sed0000767.1-exon-LG04:11429273..11429473	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000767.1	Sed0000767.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding