Pay0018662.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0018662.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase catalytic domain-containing protein
Location	chr11: 9733644 .. 9733997 (-)
Sequence length	354
RNA-Seq Expression	Pay0018662.1
Synteny	Pay0018662.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGATAAATTATGTGAAAAATTCAAGTTCAAGCAATACAAGTCATCTCTGTATAACACAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAAACGTTATGCAATCTTCTGAAGAAAATTGTCTTCAAGTCGAAAAAGGATTTGGAAGAAAGAATCGGTGAAGGATTGTGGGCTTATCGAACCACTCATTGCACTCTTACAGGGGTTACACCATATTCGCTCGTTTATGGTGTAGAGGTTGTCCTTCCCCTTGAAAGAGAAATCTCATCATTAAGAATGGCAGAACAAGAGAGGTTGACTACCGAAGACAATGTCAAGTTATGTCTTCAAGAGTTAGAAGTACGCGATTAA

mRNA sequence

ATGATAGATAAATTATGTGAAAAATTCAAGTTCAAGCAATACAAGTCATCTCTGTATAACACAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAAACGTTATGCAATCTTCTGAAGAAAATTGTCTTCAAGTCGAAAAAGGATTTGGAAGAAAGAATCGGTGAAGGATTGTGGGCTTATCGAACCACTCATTGCACTCTTACAGGGGTTACACCATATTCGCTCGTTTATGGTGTAGAGGTTGTCCTTCCCCTTGAAAGAGAAATCTCATCATTAAGAATGGCAGAACAAGAGAGGTTGACTACCGAAGACAATGTCAAGTTATGTCTTCAAGAGTTAGAAGTACGCGATTAA

Coding sequence (CDS)

ATGATAGATAAATTATGTGAAAAATTCAAGTTCAAGCAATACAAGTCATCTCTGTATAACACAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAAACGTTATGCAATCTTCTGAAGAAAATTGTCTTCAAGTCGAAAAAGGATTTGGAAGAAAGAATCGGTGAAGGATTGTGGGCTTATCGAACCACTCATTGCACTCTTACAGGGGTTACACCATATTCGCTCGTTTATGGTGTAGAGGTTGTCCTTCCCCTTGAAAGAGAAATCTCATCATTAAGAATGGCAGAACAAGAGAGGTTGACTACCGAAGACAATGTCAAGTTATGTCTTCAAGAGTTAGAAGTACGCGATTAA

Protein sequence

MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD

Homology

[Close]

BLAST of Pay0018662.1 vs. ExPASy TrEMBL
Match: A0A5A7TJB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00030 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY
Sbjct: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD
Sbjct: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 117

[Close]

BLAST of Pay0018662.1 vs. ExPASy TrEMBL
Match: A0A5D3BGZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00220 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.5e-55
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAY
Sbjct: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVSKSKKDLEERIGEALWAY 60

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERLTTEDNVKLCLQELEVRD
Sbjct: 61  RTTHCTPTGVTPYSLVYGVEVVLSLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 117

[Close]

BLAST of Pay0018662.1 vs. ExPASy TrEMBL
Match: A0A1S3C2U7 (uncharacterized protein LOC103496034 OS=Cucumis melo OX=3656 GN=LOC103496034 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.5e-55
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAY
Sbjct: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVSKSKKDLEERIGEALWAY 60

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERLTTEDNVKLCLQELEVRD
Sbjct: 61  RTTHCTPTGVTPYSLVYGVEVVLSLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 117

[Close]

BLAST of Pay0018662.1 vs. ExPASy TrEMBL
Match: A0A5D3DVM7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00230 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 101/117 (86.32%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLC KFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAY
Sbjct: 786 MIDKLCGKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAY 845

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE LTTEDNVKL LQELE  D
Sbjct: 846 RTTHRTPTGVTPYSLVYGVEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD 902

[Close]

BLAST of Pay0018662.1 vs. ExPASy TrEMBL
Match: A0A5D3D3R6 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001550 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 101/117 (86.32%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSS+YNTA N LAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAY
Sbjct: 121 MIDKLCEKFKFKQYKSSMYNTATNCLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAY 180

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE LTTEDNVKL LQELE  D
Sbjct: 181 RTTHRTPTGVTPYSLVYGVEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD 237

[Close]

BLAST of Pay0018662.1 vs. NCBI nr
Match: KAA0043404.1 (uncharacterized protein E6C27_scaffold1639G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 5.8e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY
Sbjct: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD
Sbjct: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 117

[Close]

BLAST of Pay0018662.1 vs. NCBI nr
Match: XP_008455971.1 (PREDICTED: uncharacterized protein LOC103496034 [Cucumis melo] >TYJ98306.1 uncharacterized protein E5676_scaffold232G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAY
Sbjct: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVSKSKKDLEERIGEALWAY 60

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERLTTEDNVKLCLQELEVRD
Sbjct: 61  RTTHCTPTGVTPYSLVYGVEVVLSLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 117

[Close]

BLAST of Pay0018662.1 vs. NCBI nr
Match: TYK27554.1 (uncharacterized protein E5676_scaffold22G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.0e-46
Identity = 101/117 (86.32%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLC KFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAY
Sbjct: 786 MIDKLCGKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAY 845

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE LTTEDNVKL LQELE  D
Sbjct: 846 RTTHRTPTGVTPYSLVYGVEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD 902

[Close]

BLAST of Pay0018662.1 vs. NCBI nr
Match: KAA0041944.1 (uncharacterized protein E6C27_scaffold67G003660 [Cucumis melo var. makuwa] >TYK17879.1 uncharacterized protein E5676_scaffold306G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 3.9e-46
Identity = 101/117 (86.32%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
           MIDKLCEKFKFKQYKSS+YNTA N LAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAY
Sbjct: 121 MIDKLCEKFKFKQYKSSMYNTATNCLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAY 180

Query: 61  RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
           RTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE LTTEDNVKL LQELE  D
Sbjct: 181 RTTHRTPTGVTPYSLVYGVEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD 237

[Close]

BLAST of Pay0018662.1 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 6.6e-46
Identity = 99/117 (84.62%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1    MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAY 60
            M+DKLCEKFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +E+IGE LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 61   RTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCLQELEVRD 118
            RTTH T TGVTPYSLVYGVE VLPLEREI SLRMA QE LTTEDNVKL LQELE  D
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD 2336

The following BLAST results are available for this feature:

BLAST of Pay0018662.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0018662.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJB0	2.8e-58	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BGZ8	6.5e-55	96.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C2U7	6.5e-55	96.58	uncharacterized protein LOC103496034 OS=Cucumis melo OX=3656 GN=LOC103496034 PE=...	[more]
A0A5D3DVM7	1.4e-46	86.32	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00230 ...	[more]
A0A5D3D3R6	1.9e-46	86.32	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Pay0018662.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043404.1	5.8e-58	100.00	uncharacterized protein E6C27_scaffold1639G00030 [Cucumis melo var. makuwa]	[more]
XP_008455971.1	1.3e-54	96.58	PREDICTED: uncharacterized protein LOC103496034 [Cucumis melo] >TYJ98306.1 uncha...	[more]
TYK27554.1	3.0e-46	86.32	uncharacterized protein E5676_scaffold22G00230 [Cucumis melo var. makuwa]	[more]
KAA0041944.1	3.9e-46	86.32	uncharacterized protein E6C27_scaffold67G003660 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_031739134.1	6.6e-46	84.62	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]

BLAST of Pay0018662.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..114 e-value: 6.5E-19 score: 70.0
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 8..114
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 8..114
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0018662	Pay0018662	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018662.1-cds	Pay0018662.1-cds-chr11:9733644..9733997	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018662.1-exon	Pay0018662.1-exon-chr11:9733644..9733997	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0018662.1	Pay0018662.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity