Pay0018034.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0018034.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	60S ribosomal protein L30-like
Location	chr09: 12535968 .. 12538330 (+)
Sequence length	720
RNA-Seq Expression	Pay0018034.1
Synteny	Pay0018034.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCACCCCTTGTCGTGAAAAAGCCAGAAGGTATGGATTGAAACCCTAATTTGAAACCCATAAAATTTGAAGATTTCAATACTTCATCTAATATTTATCACTTTCATATTTCTTTAGGTATTCGTACACCTTTTGAGTAGCGACGATGGCTCCGGCGAAGAAGACCGTAAGTATCATTCTAATGTCGCACTTCCAATTAGTTTATGGATACTGGTTTTGATGATTTTGATGATTTTTGGTGTTGTAATTTGCAGAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAAAGCGGCAAGTACACGCTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGTTTTCATCCGTGTTCTTCTTTCAATTTAAGGTTTTATTCTGTATTTTTTTGTACACATTTCAGTATTTCGATCTGTGAAAATACAGGAAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATCGGAGTTCACCACTACAACGGAAGTAAGTTTTTTAGATAGTCTACTTCTACTTGGTAGATGGTTGTTTATTTTGTCAAAGTTGCAAGCTTTATAACATTTTGGAGCTTCGTATGCATGATTTCTGATTTACGGGACTTGACTGCTCTCTTTTCTTAATAATGTTAGCACATCTTTCATTATTGTAGAATAAGAAAAACTGCTCTTATACTTGACGCAAATTAGAGTAAGCATTTTGTAATCTGGGCAAGTATTTACTCTGTTATTGTATATTTGAGTAACTTGATCAATTAGGTAATGGCTGGGTATTCTGCTACGAAGAGTGCTCATAATGGGGCTCTCTGTGTTCAAATAAACTAATAATTGAGTGTGTAGTTTGTCCAACTTACTACAACCTTTGTAGAACTATTTGCCAGGTAGGTGCTTCTTGCATGCCTGAGAAGCAAGGCACAGATAGACACAACATAGACACAGGAACACTAAAATCTAGGGCAGAAATGCAACAAAAATATTTTTATCAAGTGTCATAGTGTCCAGACTAAATTAAACTCTATGCTTAGTTTTGTACTTTCCTATTGATTTGCTACCATTGTCTTTCAACAGTTGTTTTGATCTTGTTAGTCAGCCTATTGAATTAAGTAGGTGGGTTTATATCATTGGTTGTAATTGGTTTTCTTCTTACTCATAATATTAATGTTGGTCCATCAATTTAATTTTAACTCATTCCATTTATACATGTTTTGTTTAAATATTAGTCAGTTAATTAGCGACTTGTATGGTTGATCAGTTAATTAGCGACTTGTATGGTTGATCAGTTAATTAGCGACTTGTATGGTTGATCAGTTAATTAGCGACTTGTATGGTGGATCAGTTAATTAGCGACTTGTATGGTGGATCAGTTAATTAGCGACTTGTATGGTGGATCAGTTAATTAGCGACTTGTATGGTGGATCAGTTAATTAGCGACTTGTATGGTTGATTGTTCTGCTTTACTTCTATGTATTTTCAGCCACTGTTATTATTAGTATGTTTTATTTATTATTTTTGTTATTTATGTACGTTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTACTACGAACTTTTTTATTTGGTTCATTAAATTTCATTTCTATTTGATTACGGTGAAGTTTGCATACATAATTGAAACAAAAATTGATATATTGCCATTTGATTTTCCATTGCTTCATAGATTAATTTCTTACTGAGAGAAGATATTTTCTGTGGTATTTTAGAGAACAGATGTAGTTGGGTGTTGGGTTTTTAAATGCAACACCTTGAAAATTGTCACCAAAATGATAAATCTGTTTAAGTTTAAATCAAAATAGAAAATAGTGAAAACATTTAAGTGCCTATACTCGACTTTTATTGATTTGTTTGACCAAGATTCCTCCCTTTTTATTCTTTTCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGCGATCAGTGATTTTTGTCATTGAGAACGTTAGTTGTTTTTTTCTTCTTCTTTTGCACCTTTTCTCTTCAGCAAAGGTAAAATTTGCACTGATTTTAATGTCCCAGAGTAGCAACCAACTTTAAGCATTAAAATTGTATTGTTGATAACCAGATTTTGTCAATGTCTTTGAGATTTTATGTAGAATGCTCAAGTAGTTTCATACCTATTTATGCAAGCAATTGAGAATCGAAAATCTCCTTGCCTTCGAATACAAGATTGTTTATCGAAAATGAGCAGGAATTTATCATTTGATCCAAATGCCTCGTATGAGACTTAATTATACTCGTGTTAAAT

mRNA sequence

GCCACCCCTTGTCGTGAAAAAGCCAGAAGGTATTCGTACACCTTTTGAGTAGCGACGATGGCTCCGGCGAAGAAGACCAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAAAGCGGCAAGTACACGCTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATCGGAGTTCACCACTACAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGCGATCAGTGATTTTTGTCATTGAGAACGTTAGTTGTTTTTTTCTTCTTCTTTTGCACCTTTTCTCTTCAGCAAAGGTAAAATTTGCACTGATTTTAATGTCCCAGAGTAGCAACCAACTTTAAGCATTAAAATTGTATTGTTGATAACCAGATTTTGTCAATGTCTTTGAGATTTTATGTAGAATGCTCAAGTAGTTTCATACCTATTTATGCAAGCAATTGAGAATCGAAAATCTCCTTGCCTTCGAATACAAGATTGTTTATCGAAAATGAGCAGGAATTTATCATTTGATCCAAATGCCTCGTATGAGACTTAATTATACTCGTGTTAAAT

Coding sequence (CDS)

ATGGCTCCGGCGAAGAAGACCAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAAAGCGGCAAGTACACGCTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATCGGAGTTCACCACTACAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGCGATCAGTGA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ

Homology

[Close]

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-54
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-51
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-51
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.2e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.8e-50
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL
Match: A0A5D3DSZ7 (60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002180 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL
Match: A0A6J1JWW8 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL
Match: A0A6J1FH91 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL
Match: A0A1S3CCQ4 (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL
Match: A0A0A0KQ98 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_038906736.1 60S ribosomal protein L30-like [Benincasa hispida] >KAA0062391.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa] >KAG6579016.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016539.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma] >TYK26589.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. NCBI nr
Match: XP_004140311.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_008795 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. NCBI nr
Match: XP_022141723.1 (60S ribosomal protein L30-like [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 7.5e-55
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MA AKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. NCBI nr
Match: KAG6602049.1 (60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 34  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 93

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 94  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 145

[Close]

BLAST of Pay0018034.1 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7032743.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

[Close]

BLAST of Pay0018034.1 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-52
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-52
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of Pay0018034.1 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.1e-51
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

The following BLAST results are available for this feature:

BLAST of Pay0018034.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49884	1.0e-54	89.29	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]
Q9C8F7	1.8e-51	83.93	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]
Q9M5M6	3.1e-51	85.59	60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1	[more]
Q8VZ19	5.2e-51	82.14	60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1	[more]
Q9LSA3	5.8e-50	81.25	60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1	[more]

BLAST of Pay0018034.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSZ7	1.1e-56	100.00	60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1JWW8	1.1e-56	100.00	60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 ...	[more]
A0A6J1FH91	1.1e-56	100.00	60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=...	[more]
A0A1S3CCQ4	1.1e-56	100.00	60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1	[more]
A0A0A0KQ98	3.3e-56	99.11	Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409...	[more]

BLAST of Pay0018034.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460497.1	2.3e-56	100.00	PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib...	[more]
XP_004140311.1	6.8e-56	99.11	60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa...	[more]
XP_022141723.1	7.5e-55	97.32	60S ribosomal protein L30-like [Momordica charantia]	[more]
KAG6602049.1	1.3e-54	96.43	60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952815.1	1.3e-54	96.43	60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma...	[more]

BLAST of Pay0018034.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36240.1	1.3e-52	83.93	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	3.7e-52	82.14	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	4.1e-51	81.25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 13..105 e-value: 3.5E-23 score: 81.1
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 3..107 e-value: 6.1E-53 score: 179.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 13..106
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 1..112
None	No IPR available	PANTHER	PTHR11449:SF26	60S RIBOSOMAL PROTEIN L30-LIKE	coord: 1..112
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 80..100
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 24..48
IPR000231	Ribosomal protein L30e	HAMAP	MF_00481	Ribosomal_L30e	coord: 12..109 score: 21.272532

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0018034	Pay0018034	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12535968..12535996	exon
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12536084..12536132	exon
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12536221..12536326	exon
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12536414..12536515	exon
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12537556..12537624	exon
Pay0018034.1-exon	Pay0018034.1-exon-chr09:12537966..12538330	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018034.1-five_prime_utr	Pay0018034.1-five_prime_utr-chr09:12535968..12535996	five_prime_UTR
Pay0018034.1-five_prime_utr	Pay0018034.1-five_prime_utr-chr09:12536084..12536111	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018034.1-cds	Pay0018034.1-cds-chr09:12536112..12536132	CDS
Pay0018034.1-cds	Pay0018034.1-cds-chr09:12536221..12536326	CDS
Pay0018034.1-cds	Pay0018034.1-cds-chr09:12536414..12536515	CDS
Pay0018034.1-cds	Pay0018034.1-cds-chr09:12537556..12537624	CDS
Pay0018034.1-cds	Pay0018034.1-cds-chr09:12537966..12538006	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0018034.1-three_prime_utr	Pay0018034.1-three_prime_utr-chr09:12538007..12538330	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0018034.1	Pay0018034.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome