Pay0016950.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0016950.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	alpha-dioxygenase 1-like
Location	chr04: 27135672 .. 27137253 (+)
Sequence length	228
RNA-Seq Expression	Pay0016950.1
Synteny	Pay0016950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACGACAACCTTCTTCCTCATGACAAAGATGGTATTACCATCTCCGGCGATGTTAGAAATAGTTGGGCCGGTGTCTCTACTTTGCAAGCCATTTTTATTAAAGAACATAATGCCGTTTGTGATGCTCTAAAGGTTTGTATCTCTTACTAAGTGCATGTTATATATTATTTTTTTTTTATTTTTTTTAACGTTTTCCAAAGAAAAATACAAAAAGATATATAGGTGGGTTTGTTTGATAATTACTTTCTTTTTTCTTATTATTTATTTATTGTGATTATTAAAATTAATATAGAATCTATTTTATGGTTTTTCACCGATCCTATTCGTTTGGAAGTAAAAGTTTTTTGGATTAAGGATAAAGTTGAAATTTGAGAAAAATTGCAAATTGGTAGCACATCGGAAAAACTAAATATAATGTTAGAAAAAAAAATGCGATCTCAACAATAAATCGGTAGAATATCCACAATTTTCTTGAGTTGGATATGATAATTTCATCAAACAACATATCATTAAATTTTGAGAAAAACATAATCTTACCTCCCTCATCTCTATCAATCGTATACTTGACTATATGAATATTTCGACTATATATATCCTAACATTATCATAAGGAGATTCCTTCTTTATGTATATATTTTAAAGAATGAAAGAGATATTTATTAAAATTAAATGCAAAAAGAATATGAAAATATGGGGATGAAGAATTGTATAGATGAGCATGACTTGTTACTTCTGCCGTAATTGCTAAAGTTCATACCATGGATTCGACAACCATATGGGTATTTACAAGTTTACCCTCAAAGTTCTATAAATGTTACAATTGATCATTACCGTTGTTTTTTTAATTCTAAAAAGGTATGGATTATTGGGAAAGAAATTCAAAGACAAATTTGGAGAAGTTGGAGGATCTATATTGGAAGGCCTAATTAGTTGGTTTGAAAAAACCAAATAATCACGGTGTTACCTATTCCTTTACTGAATAATTCACCGGCGTGTATCGTGCACCAACTCCTACTTGATTCTTTCTACTTGAGAGATGTCACAGTTGATCCCGATCACAACAAAATCTCCACCATTATTGAATAGTATACCTCCTTTTTCTCTCTCACTCTTTATAGTTAACTTAACTATATTGTGGTTATTTCAACCAAGTTAATGGATATTGGTTTTGTTGTATGAATAGCGTGCCAATGGCGAATATGATAGGGCACAAAGGAGAAGATGGGCTTCACGGCCCTATTAGTTTCAATGGGCCACCAAGCAAGTGGAGCTCTTGAGCTAGCTGTTTAACTATCCATTGTGGCTTAGGAATCTCATAGCCCACGACATGGAAAACAAGGATAGGCCCGATCACATTGACCTTGCAGCTCTTGAAGGTGTTGACCCAATCACAGCCCTTTATTTCTCTTCTCATCTAATCTGCACCCTTTGTTTCTTTACGATTACATTATGTTAAACAATAATTTTCTATTTTTCCATCTTGCAGTTTATAGGGACAGAGAAAGGAGAGTTGTTAGGTACAATGACTTCCATAGGGGATTGTTTCTCATTCCAATCTCCAAGTGGGAAGATCTAA

mRNA sequence

ATGGAGGACGACAACCTTCTTCCTCATGACAAAGATGGTATTACCATCTCCGGCGATGTTAGAAATAGTTGGGCCGGTGTCTCTACTTTGCAAGCCATTTTTATTAAAGAACATAATGCCGTTTGTGATGCTCTAAAGTTTATAGGGACAGAGAAAGGAGAGTTGTTAGGTACAATGACTTCCATAGGGGATTGTTTCTCATTCCAATCTCCAAGTGGGAAGATCTAA

Coding sequence (CDS)

ATGGAGGACGACAACCTTCTTCCTCATGACAAAGATGGTATTACCATCTCCGGCGATGTTAGAAATAGTTGGGCCGGTGTCTCTACTTTGCAAGCCATTTTTATTAAAGAACATAATGCCGTTTGTGATGCTCTAAAGTTTATAGGGACAGAGAAAGGAGAGTTGTTAGGTACAATGACTTCCATAGGGGATTGTTTCTCATTCCAATCTCCAAGTGGGAAGATCTAA

Protein sequence

MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALKFIGTEKGELLGTMTSIGDCFSFQSPSGKI

Homology

[Close]

BLAST of Pay0016950.1 vs. ExPASy Swiss-Prot
Match: Q9SGH6 (Alpha-dioxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=DOX1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 2   EDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           E+  LL HD+DG+ ISGD+RNSWAGVS LQA+FIKEHNAVCDALK
Sbjct: 247 EETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALK 291

[Close]

BLAST of Pay0016950.1 vs. ExPASy Swiss-Prot
Match: Q9C9U3 (Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 4   DNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           D LL  D+ G+ ISGD+RNSW+G S LQA+F+KEHN+VCD LK
Sbjct: 241 DGLLERDERGVPISGDIRNSWSGFSLLQALFVKEHNSVCDMLK 283

[Close]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL
Match: A0A1S4DVC4 (LOW QUALITY PROTEIN: alpha-dioxygenase 1 OS=Cucumis melo OX=3656 GN=LOC103487178 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           MEDDNLLPHDKDGITIS DVRNSWAGVSTLQAIFIKEHNAVCDALK
Sbjct: 214 MEDDNLLPHDKDGITISSDVRNSWAGVSTLQAIFIKEHNAVCDALK 259

[Close]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL
Match: A0A0A0LC93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829250 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.3e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   DDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           DD LLPHDKDGI ISGDVRNSWAGVSTLQA+FIKEHNAVCD LK
Sbjct: 253 DDGLLPHDKDGIAISGDVRNSWAGVSTLQALFIKEHNAVCDVLK 296

[Close]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL
Match: A0A0A0LHW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829260 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALKFIGTEKGE 55
           ++DD LLPH +DG+ ISGDVRNSWAGVSTLQA+FIKEHNAVCDALK   T  G+
Sbjct: 243 IDDDGLLPHYRDGVAISGDVRNSWAGVSTLQALFIKEHNAVCDALKKEYTNMGD 296

[Close]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL
Match: A0A6P5H1P9 (alpha-dioxygenase 1-like isoform X2 OS=Ananas comosus OX=4615 GN=LOC109728090 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3  DDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
          DDNLL HD DGI ISGD+RNSWAGVST+QA+FIKEHNA+CDALK
Sbjct: 39 DDNLLRHDADGIAISGDIRNSWAGVSTMQALFIKEHNAICDALK 82

[Close]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL
Match: A0A6P5GZ50 (alpha-dioxygenase 1-like isoform X1 OS=Ananas comosus OX=4615 GN=LOC109728090 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   DDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           DDNLL HD DGI ISGD+RNSWAGVST+QA+FIKEHNA+CDALK
Sbjct: 131 DDNLLRHDADGIAISGDIRNSWAGVSTMQALFIKEHNAICDALK 174

[Close]

BLAST of Pay0016950.1 vs. NCBI nr
Match: XP_016899660.1 (PREDICTED: LOW QUALITY PROTEIN: alpha-dioxygenase 1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 7.1e-17
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           MEDDNLLPHDKDGITIS DVRNSWAGVSTLQAIFIKEHNAVCDALK
Sbjct: 214 MEDDNLLPHDKDGITISSDVRNSWAGVSTLQAIFIKEHNAVCDALK 259

[Close]

BLAST of Pay0016950.1 vs. NCBI nr
Match: KAE8651243.1 (hypothetical protein Csa_001497 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   DDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           DD LLPHDKDGI ISGDVRNSWAGVSTLQA+FIKEHNAVCD LK
Sbjct: 253 DDGLLPHDKDGIAISGDVRNSWAGVSTLQALFIKEHNAVCDVLK 296

[Close]

BLAST of Pay0016950.1 vs. NCBI nr
Match: XP_004147442.1 (alpha-dioxygenase 1 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   DDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           DD LLPHDKDGI ISGDVRNSWAGVSTLQA+FIKEHNAVCD LK
Sbjct: 253 DDGLLPHDKDGIAISGDVRNSWAGVSTLQALFIKEHNAVCDVLK 296

[Close]

BLAST of Pay0016950.1 vs. NCBI nr
Match: XP_011652870.1 (alpha-dioxygenase 1 [Cucumis sativus] >KGN59636.1 hypothetical protein Csa_002622 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALKFIGTEKGE 55
           ++DD LLPH +DG+ ISGDVRNSWAGVSTLQA+FIKEHNAVCDALK   T  G+
Sbjct: 243 IDDDGLLPHYRDGVAISGDVRNSWAGVSTLQALFIKEHNAVCDALKKEYTNMGD 296

[Close]

BLAST of Pay0016950.1 vs. NCBI nr
Match: XP_038905965.1 (alpha-dioxygenase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   MEDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           ++DD LL HDKDGI ISGDVRNSWAGVS+LQA+FIKEHNAVCD LK
Sbjct: 242 IDDDGLLAHDKDGIAISGDVRNSWAGVSSLQALFIKEHNAVCDVLK 287

[Close]

BLAST of Pay0016950.1 vs. TAIR 10
Match: AT3G01420.1 (Peroxidase superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 2   EDDNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           E+  LL HD+DG+ ISGD+RNSWAGVS LQA+FIKEHNAVCDALK
Sbjct: 247 EETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALK 291

[Close]

BLAST of Pay0016950.1 vs. TAIR 10
Match: AT1G73680.1 (alpha dioxygenase )

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 4   DNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           D LL  D+ G+ ISGD+RNSW+G S LQA+F+KEHN+VCD LK
Sbjct: 241 DGLLERDERGVPISGDIRNSWSGFSLLQALFVKEHNSVCDMLK 283

[Close]

BLAST of Pay0016950.1 vs. TAIR 10
Match: AT1G73680.2 (alpha dioxygenase )

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 4   DNLLPHDKDGITISGDVRNSWAGVSTLQAIFIKEHNAVCDALK 47
           D LL  D+ G+ ISGD+RNSW+G S LQA+F+KEHN+VCD LK
Sbjct: 250 DGLLERDERGVPISGDIRNSWSGFSLLQALFVKEHNSVCDMLK 292

The following BLAST results are available for this feature:

BLAST of Pay0016950.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH6	1.5e-14	77.78	Alpha-dioxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=DOX1 PE=1 SV=1	[more]
Q9C9U3	6.0e-11	65.12	Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1	[more]

BLAST of Pay0016950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DVC4	3.4e-17	97.83	LOW QUALITY PROTEIN: alpha-dioxygenase 1 OS=Cucumis melo OX=3656 GN=LOC103487178...	[more]
A0A0A0LC93	9.3e-15	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829250 PE=4 SV=1	[more]
A0A0A0LHW3	1.6e-14	74.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829260 PE=4 SV=1	[more]
A0A6P5H1P9	1.0e-13	84.09	alpha-dioxygenase 1-like isoform X2 OS=Ananas comosus OX=4615 GN=LOC109728090 PE...	[more]
A0A6P5GZ50	1.0e-13	84.09	alpha-dioxygenase 1-like isoform X1 OS=Ananas comosus OX=4615 GN=LOC109728090 PE...	[more]

BLAST of Pay0016950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899660.1	7.1e-17	97.83	PREDICTED: LOW QUALITY PROTEIN: alpha-dioxygenase 1 [Cucumis melo]	[more]
KAE8651243.1	1.9e-14	90.91	hypothetical protein Csa_001497 [Cucumis sativus]	[more]
XP_004147442.1	1.9e-14	90.91	alpha-dioxygenase 1 [Cucumis sativus]	[more]
XP_011652870.1	3.3e-14	74.07	alpha-dioxygenase 1 [Cucumis sativus] >KGN59636.1 hypothetical protein Csa_00262...	[more]
XP_038905965.1	2.1e-13	82.61	alpha-dioxygenase 1-like isoform X1 [Benincasa hispida]	[more]

BLAST of Pay0016950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01420.1	1.1e-15	77.78	Peroxidase superfamily protein	[more]
AT1G73680.1	4.3e-12	65.12	alpha dioxygenase	[more]
AT1G73680.2	4.3e-12	65.12	alpha dioxygenase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019791	Haem peroxidase, animal-type	PFAM	PF03098	An_peroxidase	coord: 5..46 e-value: 7.8E-7 score: 28.1
IPR037120	Haem peroxidase domain superfamily, animal type	GENE3D	1.10.640.10	Haem peroxidase domain superfamily, animal type	coord: 1..54 e-value: 2.6E-11 score: 44.6
None	No IPR available	PANTHER	PTHR11903:SF31	PEROXIDASE SUPERFAMILY PROTEIN-RELATED	coord: 2..46
None	No IPR available	PANTHER	PTHR11903	PROSTAGLANDIN G/H SYNTHASE	coord: 2..46
IPR010255	Haem peroxidase superfamily	SUPERFAMILY	48113	Heme-dependent peroxidases	coord: 10..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0016950	Pay0016950	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016950.1-cds	Pay0016950.1-cds-chr04:27135672..27135809	CDS
Pay0016950.1-cds	Pay0016950.1-cds-chr04:27137164..27137253	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016950.1-exon	Pay0016950.1-exon-chr04:27135672..27135809	exon
Pay0016950.1-exon	Pay0016950.1-exon-chr04:27137164..27137253	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0016950.1	Pay0016950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0098869	cellular oxidant detoxification
molecular_function	GO:0020037	heme binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen