Pay0016343.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0016343.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr01: 12170754 .. 12172977 (+)
Sequence length	567
RNA-Seq Expression	Pay0016343.1
Synteny	Pay0016343.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTTACATGTTTTTTTATAAACAAAAAAGTCACTGTAAATAACAATAATTCTAATTTGTTTATAGAAACAAATGGGATGAGTATTACTAAATTTTTTCTTAACCTAAACAAATGGTTGTGATATTGGCTTGTTATATAAAGATTTGTACAAAATTGAATTTTAAAAATGATTGGCTTTAACCTATTTTAAAAAAAAAATTAAATTATAAAATTTCAATTTCATATAAAATTAAATATTTAAATTTCAGAAAACTGATATGTCATAAAAAAGATTAAAGAAGAAAGAAAATTTCTTACTATGATTTTTGTTATTTTGGATTTTAAAACGAAAGGTAAATTAACAACTTATTACTAACTTCTAAAACATTGGTAAATTTGTAACAAAGCAATATGTTAAAACTTTTGTTTGTAAATTATTAAAAAAATAATCTACAAAGCAAGTTTTTTTCTTTTTTTTTTAAGATATCATTGTCTTTTCTAAAATCAAAACTAAATAAAAAAAAAACTTGTTTTACTTCATAACTGAATTGAGTTACATAAATTGAGAACACGAAAACAATTTCTTAAAACTTTTGTTTTTAAGAAATAATCGTAAAAGAAGATAATCTAGTATTTTTTTAGAGCAATTCTAAATTAAAATTAAGTAAGTCTCACAATTTTTTTAAAAAAATACATCATTGTCCTTTTTTTAAAATCAAAACTAAATCAAGAATTCAAACTTCATAGCTAAATTATATAGATAATGAGTTACATAATTAAAAAACAAAAATAATTTTTTTAAACTTTTGTTTTTAAGAAAAAAGTTGTAAAGATAATGTTGTACTTTTAAAACCAATGCTAAACTAAAATCAATTAAGACACTATTGGCTTTTCTAAAATTAAAACTAAATCAAGAAAATTTTCAATTTCATAACGAAATTACATAGAGCAAAGAGTTACATAATTAAAAAAAAAACATTTTTTTTTTAAAAAAACTTTTGTTTTGAAGAAAAAAATTGTAAAATAAGATAATCTTGTATTTTTTTTTTAAAAAAAAAGCAATGCTAAATTAAAATTAAGTAAGTCTCACAAAATTTTTTTTTCCTTAAAAAACACTATTTATTTTTCTAAAATCATAACTAAATCAAGAAAATTTTTAAACTTCATAACTAAATTATATAGAGAAAAGAGTAATATAATTAAAAAAAAAAAAACAAAAGAACTCAATTGTGTTTGTTTTGTCAGTAACTTATTGTTAATTAAAGTACTAAAATAGCATGAACATAGAACCAAACGAGTTGATTGCAATACTTACTGTCATTTGCACAACACAACAACAATGGATGCTTATGTTCAATATGATAATGAGACTTGGAGACAGAAGAATAGAAAACCAATCACCATACCTAAGACACCAAATTAGGCAACTTAACTTTTTTTCGTCTAATTCATGAAAGTGATATAGCTTGTCGAGAGAGTACACAGATGGACTGAAGATGTTTTACTATCTTGTGTACTATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGGTATATAATTGGCCCGCCACTACTTTGCAGTGGATATGTGCTTCTGTGAATTGACAAATAAAATGTCTTTTATCCCTTGACAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTAAGATGATGCATTCTTCTCCCCACACAGTGGTGTTAGACCATATGCTCATTTAATATGGTATACCCTAATAATTCATTATGGGTGCAACATGGGCAGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

mRNA sequence

ATGAGGGTTACATGTTTTTTTATAAACAAAAAAGTCACTGTAAATAACAATAATTCTAATTTGTTTATAGAAACAAATGGGATGAGTATTACTAAATTTTTTCTTAACCTAAACAAATGGTTAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

Coding sequence (CDS)

ATGAGGGTTACATGTTTTTTTATAAACAAAAAAGTCACTGTAAATAACAATAATTCTAATTTGTTTATAGAAACAAATGGGATGAGTATTACTAAATTTTTTCTTAACCTAAACAAATGGTTAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

Protein sequence

MRVTCFFINKKVTVNNNNSNLFIETNGMSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

Homology

[Close]

BLAST of Pay0016343.1 vs. ExPASy TrEMBL
Match: A0A1S3CJV8 (uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.4e-77
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE
Sbjct: 4   TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 63

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN                        
Sbjct: 64  ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVC 123

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Sbjct: 124 SQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 179

[Close]

BLAST of Pay0016343.1 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.8e-68
Identity = 133/176 (75.57%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           T+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHE
Sbjct: 15  TKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVN                        
Sbjct: 75  ILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVLGVC 134

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                +IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Sbjct: 135 SQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKGYYYLCDAGYPNAEGFLAP 190

[Close]

BLAST of Pay0016343.1 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 128/176 (72.73%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           T+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHE
Sbjct: 15  TKGGLEATQYVDVEEMIAIFLHIVAHDVKNRVTRRHFARSGETVSRH----FNAVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVN                        
Sbjct: 75  ILLKQPDPVTYSCSHEKWRWFQKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVC 134

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                +IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Sbjct: 135 LQNGEFIFVMPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAP 186

[Close]

BLAST of Pay0016343.1 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64
Identity = 130/185 (70.27%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HE
Sbjct: 15  TRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLRIHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGTHIKVN--------------- 161
           ILLKQPD VTHSCSHEKWRWFQ           + ALDGTHIKVN               
Sbjct: 75  ILLKQPDQVTHSCSHEKWRWFQVYNWPATTLQSICALDGTHIKVNVSMSDHPRYRSRKSD 134

Query: 162 --------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAE 189
                         +IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN E
Sbjct: 135 ITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVE 194

[Close]

BLAST of Pay0016343.1 vs. ExPASy TrEMBL
Match: A0A5D3BD50 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00390 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 117/147 (79.59%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYV VEEMV I LHI+AH+VKN+VARR+F RS ETVSRH N VLN VLRLHE
Sbjct: 15  TRGGLEATQYVHVEEMVVIFLHIIAHNVKNRVARRHFVRSGETVSRHFNAVLNTVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFVMPGWEGSASDSRVLRDVVSR 161
           ILLKQPD VTHSCSHEKWRWFQNC+GALDGTHIKVN          SASD RVLRD VSR
Sbjct: 75  ILLKQPDLVTHSCSHEKWRWFQNCIGALDGTHIKVNV--------RSASDLRVLRDAVSR 134

Query: 162 PTGLKVPKGYYYLCDAGYLNAEGFFAP 189
           PTGLKVPKGYYYLCDA Y NAEGF  P
Sbjct: 135 PTGLKVPKGYYYLCDASYPNAEGFLTP 153

[Close]

BLAST of Pay0016343.1 vs. NCBI nr
Match: XP_008463037.1 (PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE
Sbjct: 4   TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 63

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN                        
Sbjct: 64  ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVC 123

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Sbjct: 124 SQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 179

[Close]

BLAST of Pay0016343.1 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 5.8e-68
Identity = 133/176 (75.57%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           T+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHE
Sbjct: 15  TKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVN                        
Sbjct: 75  ILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVLGVC 134

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                +IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Sbjct: 135 SQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKGYYYLCDAGYPNAEGFLAP 190

[Close]

BLAST of Pay0016343.1 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 128/176 (72.73%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           T+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHE
Sbjct: 15  TKGGLEATQYVDVEEMIAIFLHIVAHDVKNRVTRRHFARSGETVSRH----FNAVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN------------------------ 161
           ILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVN                        
Sbjct: 75  ILLKQPDPVTYSCSHEKWRWFQKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVC 134

Query: 162 -----YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
                +IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Sbjct: 135 LQNGEFIFVMPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAP 186

[Close]

BLAST of Pay0016343.1 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 6.6e-64
Identity = 130/185 (70.27%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HE
Sbjct: 15  TRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLRIHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGTHIKVN--------------- 161
           ILLKQPD VTHSCSHEKWRWFQ           + ALDGTHIKVN               
Sbjct: 75  ILLKQPDQVTHSCSHEKWRWFQVYNWPATTLQSICALDGTHIKVNVSMSDHPRYRSRKSD 134

Query: 162 --------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAE 189
                         +IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN E
Sbjct: 135 ITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVE 194

[Close]

BLAST of Pay0016343.1 vs. NCBI nr
Match: TYJ96934.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-60
Identity = 117/147 (79.59%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 42  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHE 101
           TRGGLEATQYV VEEMV I LHI+AH+VKN+VARR+F RS ETVSRH N VLN VLRLHE
Sbjct: 15  TRGGLEATQYVHVEEMVVIFLHIIAHNVKNRVARRHFVRSGETVSRHFNAVLNTVLRLHE 74

Query: 102 ILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFVMPGWEGSASDSRVLRDVVSR 161
           ILLKQPD VTHSCSHEKWRWFQNC+GALDGTHIKVN          SASD RVLRD VSR
Sbjct: 75  ILLKQPDLVTHSCSHEKWRWFQNCIGALDGTHIKVNV--------RSASDLRVLRDAVSR 134

Query: 162 PTGLKVPKGYYYLCDAGYLNAEGFFAP 189
           PTGLKVPKGYYYLCDA Y NAEGF  P
Sbjct: 135 PTGLKVPKGYYYLCDASYPNAEGFLTP 153

[Close]

BLAST of Pay0016343.1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-22
Identity = 64/217 (29.49%), Postives = 105/217 (48.39%), Query Frame = 0


Query: 11  KVTVNNNNSNLFIETNG----------MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAI 70
           K+++++ N  ++   NG          M    F+   +   TRG L  T  + +E  +AI
Sbjct: 21  KISISDGNKFVYQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAI 80

Query: 71  LLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWR 130
            L I+ H+++ +  +  F  S ET+SRH N VLNAV+ + +    QP+  + +  ++   
Sbjct: 81  FLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDD-P 140

Query: 131 WFQNCLGALDGTHIKV-----------------------------NYIFVMPGWEGSASD 189
           +F++C+G +D  HI V                              + +V+ GWEGSASD
Sbjct: 141 YFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASD 200

[Close]

BLAST of Pay0016343.1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 52/198 (26.26%), Postives = 76/198 (38.38%), Query Frame = 0


Query: 28  MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSR 87
           MS+  F    N   T   L+ T  + +EE VA+ L I  H+   +     F R+ ETV R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 88  HLNVVLNAVLRLHEILLKQPD-------PVTHSCSHEKWRWFQNCLGALDGTHI------ 147
               VL A   L    ++ P        P         W +F   +GA+DGTH+      
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKP 191

Query: 148 -----------------------KVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG- 189
                                  K+ + ++  G  GS  D+ VL+      +   +P   
Sbjct: 192 DLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSE 251

[Close]

BLAST of Pay0016343.1 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-09
Identity = 50/160 (31.25%), Postives = 75/160 (46.88%), Query Frame = 0


Query: 45  GLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVLRLH-EI 104
           GL+++  + ++E VAI L I A +D +  +A R F  + ET+ R  + VL A+ RL  E 
Sbjct: 47  GLQSSTNISLDESVAIFLIICASNDTQRDIALR-FGHAQETIWRKFHDVLKAMERLAVEY 106

Query: 105 LLKQPDPVTHSCSH------EKWRWFQNCLG-------ALDGTHIKVNYIFVMPGWEGSA 164
           +  +      + S+        W +  + LG       A+    +   Y FV  G  GS 
Sbjct: 107 IRPRKVEELRAISNRLQDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFV--GMAGST 166

Query: 165 SDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFAP 189
            D+RVL   +S      V P   YYL D+GY N  G+ AP
Sbjct: 167 HDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLAP 203

[Close]

BLAST of Pay0016343.1 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 138 YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 189
           +I+V+ GWEGSA DSRVL D + +          +YL D G+ N   F AP
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAP 65

[Close]

BLAST of Pay0016343.1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-05
Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 121 WFQNCLGALDGTHI-----------------------------KVNYIFVMPGWEGSASD 170
           +F++C+GA+D THI                              V +++V+ GWEGSA D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

The following BLAST results are available for this feature:

BLAST of Pay0016343.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0016343.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJV8	7.4e-77	83.52	uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=...	[more]
A0A5A7U6W3	2.8e-68	75.57	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7VG45	1.9e-64	72.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U3R2	3.2e-64	70.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BD50	1.7e-60	79.59	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Pay0016343.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463037.1	1.5e-76	83.52	PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]	[more]
KAA0050107.1	5.8e-68	75.57	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0065306.1	3.9e-64	72.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048191.1	6.6e-64	70.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96934.1	3.4e-60	79.59	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0016343.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	5.1e-22	29.49	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.4e-11	26.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	8.5e-09	31.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	2.0e-05	43.14	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	3.3e-05	31.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 33..138 coord: 137..182
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 33..138
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 137..182

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0016343	Pay0016343	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016343.1-exon	Pay0016343.1-exon-chr01:12170754..12170875	exon
Pay0016343.1-exon	Pay0016343.1-exon-chr01:12172264..12172510	exon
Pay0016343.1-exon	Pay0016343.1-exon-chr01:12172594..12172635	exon
Pay0016343.1-exon	Pay0016343.1-exon-chr01:12172723..12172819	exon
Pay0016343.1-exon	Pay0016343.1-exon-chr01:12172919..12172977	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016343.1-cds	Pay0016343.1-cds-chr01:12170754..12170875	CDS
Pay0016343.1-cds	Pay0016343.1-cds-chr01:12172264..12172510	CDS
Pay0016343.1-cds	Pay0016343.1-cds-chr01:12172594..12172635	CDS
Pay0016343.1-cds	Pay0016343.1-cds-chr01:12172723..12172819	CDS
Pay0016343.1-cds	Pay0016343.1-cds-chr01:12172919..12172977	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0016343.1	Pay0016343.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome