Pay0012660.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0012660.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	chr04: 31004111 .. 31004455 (-)
Sequence length	345
RNA-Seq Expression	Pay0012660.1
Synteny	Pay0012660.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTATTTCACCGCCAAATTTCTCTGATGATACTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCCAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCAGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

mRNA sequence

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTATTTCACCGCCAAATTTCTCTGATGATACTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCCAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCAGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

Coding sequence (CDS)

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTATTTCACCGCCAAATTTCTCTGATGATACTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCCAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCAGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

Protein sequence

MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITDVSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR

Homology

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BLAST of Pay0012660.1 vs. ExPASy TrEMBL
Match: A0A5A7TQP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003790 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSI SPPNFSDD CGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKAL+LPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of Pay0012660.1 vs. ExPASy TrEMBL
Match: A0A1S3B7E8 (uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSI SPPNFSDD CGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKAL+LPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of Pay0012660.1 vs. ExPASy TrEMBL
Match: A0A0A0LEJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 102/114 (89.47%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MASG + P+EIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAG  TLLANCLLPITD
Sbjct: 1   MASG-IDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR 115
           VS+AVP+GDSNE EIFLFAMPSEPTHLEKALQLPLG  LHRALIDCLEMKITS+
Sbjct: 61  VSSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALIDCLEMKITSQ 113

[Close]

BLAST of Pay0012660.1 vs. ExPASy TrEMBL
Match: A0A6J1FAF9 (uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC111442274 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.0e-34
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSIISP +F +DT GFFT  GGA LLANCLLPI+D
Sbjct: 16  MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 75

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA QLPLG GL +ALI+  EMK++S
Sbjct: 76  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 127

[Close]

BLAST of Pay0012660.1 vs. ExPASy TrEMBL
Match: A0A6J1IYI1 (uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSIISP +FS+DT  FFT  GGA LLANCLLPI+D
Sbjct: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFSEDTYCFFTATGGAALLANCLLPISD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA QLPLG GL +ALI+  EMK++S
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 112

[Close]

BLAST of Pay0012660.1 vs. NCBI nr
Match: XP_008442832.1 (PREDICTED: uncharacterized protein LOC103486601 [Cucumis melo] >KAA0043891.1 uncharacterized protein E6C27_scaffold236G002270 [Cucumis melo var. makuwa] >TYK25246.1 uncharacterized protein E5676_scaffold352G003790 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSI SPPNFSDD CGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKAL+LPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of Pay0012660.1 vs. NCBI nr
Match: KGN59122.1 (hypothetical protein Csa_001117 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.8e-49
Identity = 102/114 (89.47%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MASG + P+EIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAG  TLLANCLLPITD
Sbjct: 1   MASG-IDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITSR 115
           VS+AVP+GDSNE EIFLFAMPSEPTHLEKALQLPLG  LHRALIDCLEMKITS+
Sbjct: 61  VSSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALIDCLEMKITSQ 113

[Close]

BLAST of Pay0012660.1 vs. NCBI nr
Match: XP_038906322.1 (uncharacterized protein LOC120092165 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDL+ VN+IISP + SDDT GFF  AGG TLLANCLLPITD
Sbjct: 1   MASAGV-PVEIEEDDELFEIDLDTVNNIISPSHSSDDTYGFFRAAGGTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNE-GEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKIT 113
           VSNA+P+GDSN+  E+ LFAMP +PTHLE  LQL LG GL RALIDCLEMKIT
Sbjct: 61  VSNAIPMGDSNKCSEMSLFAMPPKPTHLETVLQLLLGFGLRRALIDCLEMKIT 112

[Close]

BLAST of Pay0012660.1 vs. NCBI nr
Match: XP_022935370.1 (uncharacterized protein LOC111442274 [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSIISP +F +DT GFFT  GGA LLANCLLPI+D
Sbjct: 16  MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 75

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA QLPLG GL +ALI+  EMK++S
Sbjct: 76  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 127

[Close]

BLAST of Pay0012660.1 vs. NCBI nr
Match: XP_023529132.1 (uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 hypothetical protein SDJN03_20692, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017447.1 hypothetical protein SDJN02_19312, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSIISP +F +DT GFFT  GGA LLANCLLPI+D
Sbjct: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALQLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA QLPLG GL +ALI+  EMK++S
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 112

[Close]

BLAST of Pay0012660.1 vs. TAIR 10
Match: AT2G36295.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10 EIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGGATLLANCLLPITDVSNAVP 67
          E + +DDLFEI+LEAV+   + P +    C       G+ LLANCLLP  ++SNAVP
Sbjct: 32 EEDGEDDLFEINLEAVSDTATSPPYD---CQRLPARTGSVLLANCLLPAAEISNAVP 85

The following BLAST results are available for this feature:

BLAST of Pay0012660.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQP6	1.3e-55	97.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E8	1.3e-55	97.37	uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=...	[more]
A0A0A0LEJ9	2.3e-49	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1	[more]
A0A6J1FAF9	8.0e-34	70.80	uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1IYI1	2.3e-33	70.80	uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795...	[more]

BLAST of Pay0012660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442832.1	2.6e-55	97.37	PREDICTED: uncharacterized protein LOC103486601 [Cucumis melo] >KAA0043891.1 unc...	[more]
KGN59122.1	4.8e-49	89.47	hypothetical protein Csa_001117 [Cucumis sativus]	[more]
XP_038906322.1	4.6e-36	75.22	uncharacterized protein LOC120092165 [Benincasa hispida]	[more]
XP_022935370.1	1.7e-33	70.80	uncharacterized protein LOC111442274 [Cucurbita moschata]	[more]
XP_023529132.1	1.7e-33	70.80	uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 ...	[more]

BLAST of Pay0012660.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36295.1	6.3e-07	47.37	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0012660	Pay0012660	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012660.1-cds	Pay0012660.1-cds-chr04:31004111..31004455	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012660.1-exon	Pay0012660.1-exon-chr04:31004111..31004455	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0012660.1	Pay0012660.1-protein	polypeptide