Pay0010978.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0010978.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	SKP1-like protein
Location	chr01: 16824491 .. 16826263 (-)
Sequence length	854
RNA-Seq Expression	Pay0010978.1
Synteny	Pay0010978.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCACTTTTTGAATCTTTCGAATCGTCGCTTGTCAGTTAGGGTTTCTTCATATTCCCCGAATCGGGAACAACCCATCGACCAAATTCTCTCAACACAATGTCGTCCTCTAAGAAGATCGTTCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGATGAAATCGTCGCAGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGTGTTGACACTGTTATTCCCTTGCCTAATGTTACCAGTGCCATTCTTTCTAAGGTAGTTGAGTATTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGTCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTTAAGGTTGATCAAAATACTCTTTTTGATCTCATCTTGGTGAGTTCTTTTTTTCCTCTCTCTGGAATTATGAAAATTCATGGTGTTTCTCAGTGAATTTGATTTTTCTTGTTTCTCCGTTTTACTCTGTCGATAATTTGGGGTTCTGGATTGTCATTTGATGATGTTTTTTCTTGCTATGTCCTTCTCTCATTTCTTCTACGAATTGGCTTCTTTGCGATTTCTTTTGTTGATTGGATGATCGGATATATCCTTCGAATGATCTTGCTTCCTTGTTTTAGAAAGAACCCTGGAATTGAAGAGTACTCTCAATCAATGAATCACTTAGGCCCGTTTGGTAAACCTTATTGGTTTTTGGAAACTAAGCCTATTTCGTCTCGTTTTCGTACATTTGCATCTTTAGTGGTGAATTCTGGGCCAAATTCCAGTTTTTTTTTTTAAAAAAAACTTTTTTTTGTAGTGTTCAAAATTTGACTTGGTTTTTGAAACAATCAAGAAATTTAGAGGTGTAAAAAGTGTTGAGAAAATTATAAACAAAAGACTTAGTTCATCATGTTTCTTTGGGATGGTATGTTTGGTTGATTATTCTAACATGATTTAGGAGGCCAAACTTCAAAGGGTTCCCCTTTTGCTGTATTTTATTGGATTAAGCAACAATCATCAAATTGGTTTAAGCCCATTAAACCTTTTCCCTCAAAATTTTTAGTGATTAGGACGAGGTAGCAAAGGATGCTTCTATCAAAACTGGAATTCCTCAGTTACAAATCATATCAATTTGGTTATTTAATGTCTCCACAGCATTGTTTATGAGATTTATTCACAACACAAGTAATATTTGTTGTATAAATTCTCTATGCATGGGTCTTTTTTATTTTCAATACTGGCTATGGCTTATAATGGGTGTTTTTCTTTTGTTTTGTTTTGTTTTTTTTTATTTTTTGGTGCTCCCAAAAATCAGGCTGCTAACTACCTGAACATCAAGAGTCTGCTGGATCTAACATGCCAGACAGTGGCAGATATGATCAAAGGAAAGACACCAGAGGAAATTCGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAGTAATATAATACAGTCATTTTTAATTTGATTATATAATAGTAATTAATCAATGTCTTTGTAATGTCTATAAGATTTTAGGGAAGTTAGACTCTTTTCATTTCACTTTCTGGGATGCTCTAAGTTGTAACTTCTCTCTCTTTTTATCGAAGATCAATATCTAGTTTTTGTGGATTTCATATACTTTTCTGTGGAAGCCAATGTCTCAACGTTATCATCTTTAACCTTACGAATACTGTATTTTTTAAAATTCGTGTGCATTATTTTATAAATTTGCTCAAAAGTCAA

mRNA sequence

ATTTTTCACTTTTTGAATCTTTCGAATCGTCGCTTGTCAGTTAGGGTTTCTTCATATTCCCCGAATCGGGAACAACCCATCGACCAAATTCTCTCAACACAATGTCGTCCTCTAAGAAGATCGTTCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGATGAAATCGTCGCAGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGTGTTGACACTGTTATTCCCTTGCCTAATGTTACCAGTGCCATTCTTTCTAAGGTAGTTGAGTATTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGTCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTTAAGGTTGATCAAAATACTCTTTTTGATCTCATCTTGGCTGCTAACTACCTGAACATCAAGAGTCTGCTGGATCTAACATGCCAGACAGTGGCAGATATGATCAAAGGAAAGACACCAGAGGAAATTCGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAGTAATATAATACAGTCATTTTTAATTTGATTATATAATAGTAATTAATCAATGTCTTTGTAATGTCTATAAGATTTTAGGGAAGTTAGACTCTTTTCATTTCACTTTCTGGGATGCTCTAAGTTGTAACTTCTCTCTCTTTTTATCGAAGATCAATATCTAGTTTTTGTGGATTTCATATACTTTTCTGTGGAAGCCAATGTCTCAACGTTATCATCTTTAACCTTACGAATACTGTATTTTTTAAAATTCGTGTGCATTATTTTATAAATTTGCTCAAAAGTCAA

Coding sequence (CDS)

ATGTCGTCCTCTAAGAAGATCGTTCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGATGAAATCGTCGCAGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGTGTTGACACTGTTATTCCCTTGCCTAATGTTACCAGTGCCATTCTTTCTAAGGTAGTTGAGTATTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGTCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTTAAGGTTGATCAAAATACTCTTTTTGATCTCATCTTGGCTGCTAACTACCTGAACATCAAGAGTCTGCTGGATCTAACATGCCAGACAGTGGCAGATATGATCAAAGGAAAGACACCAGAGGAAATTCGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAG

Protein sequence

MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

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BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 126/171 (73.68%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKV+EYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KMHVETDDKD----------------SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K HVE  +K                 S   D+ LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.5e-61
Identity = 119/159 (74.84%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDCVD  +PLPNVTS IL+KV+EYCK 
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKVI------DDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE     ++ +      DD LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.3e-57
Identity = 120/166 (72.29%), Postives = 128/166 (77.11%), Query Frame = 0


Query: 5   KKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKMHV 64
           K I L+SSDGE F+V+E VA+ESQTI+HMIEDDC D  IPLPNV S ILSKV+EYC  HV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E-TDDKDSKVIDDT--------------LKTWDAEFVKVDQNTLFDLILAANYLNIKSLL 124
                  SK  DD               LK WDA+FVKVDQ TLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-57
Identity = 119/165 (72.12%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 7   IVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKMHVE- 66
           I LRS +G+ F+V E VA+ESQTI+HMIED C DT IPLPNV++ ILSKV+EYC  HVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ------TDDKD---------SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLD 126
                   D D         +K ++D LKT+DAEFVKVDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.0e-54
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDC D  IPLPNVT AIL+KV+EYCK 
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD      +D LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.2e-78
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTSAILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.9e-72
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDC D VIPLPNV SAIL+KV+EYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 135/155 (87.10%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDC DTVIP+PNVT +IL++V+EYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1B [Cucumis melo var. makuwa] >TYK12120.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTSAILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDC D VIPLPNV SAIL+KV+EYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDC DTVIP+PNVT +IL+KV+EYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. NCBI nr
Match: XP_023529806.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.7e-68
Identity = 135/155 (87.10%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MSSSK I+LRSSDGETF +DE VA+ESQTIKHMIEDDC DTVIP+PNVT +IL+ V+EYC
Sbjct: 1   MSSSKVILLRSSDGETFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAMVIEYC 60

Query: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Pay0010978.1 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 240.7 bits (613), Expect = 7.6e-64
Identity = 126/171 (73.68%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKV+EYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KMHVETDDKD----------------SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K HVE  +K                 S   D+ LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Pay0010978.1 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-62
Identity = 119/159 (74.84%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDCVD  +PLPNVTS IL+KV+EYCK 
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKVI------DDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE     ++ +      DD LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Pay0010978.1 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-55
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDC D  IPLPNVT AIL+KV+EYCK 
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD      +D LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Pay0010978.1 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 107/160 (66.88%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           + K I+L+SSDGE+F+V+E VAVESQTIKHMIEDDCVD  IPLPNVT AIL+KV+EYCK 
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD      +  LKTWD +FVKVD  TLFDL+ AANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of Pay0010978.1 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 105/153 (68.63%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYCKM 62
           SSK IVL SSDG++F+V+E VA++SQTI HM+EDDCV   IPL NV S IL KV+EYCK 
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H    D+ + + ++ L  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H--HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Pay0010978.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	1.1e-62	73.68	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	3.5e-61	74.84	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	2.3e-57	72.29	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	5.2e-57	72.12	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	7.0e-54	68.13	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of Pay0010978.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3D8	1.9e-78	100.00	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	1.9e-78	100.00	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A0A0K4P4	7.2e-78	98.71	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A6J1C297	5.9e-72	90.32	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A6J1EKE0	1.8e-68	87.10	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]

BLAST of Pay0010978.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447950.1	3.9e-78	100.00	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1...	[more]
XP_004144851.1	1.5e-77	98.71	SKP1-like protein 1B [Cucumis sativus]	[more]
XP_022135870.1	1.2e-71	90.32	SKP1-like protein 1B [Momordica charantia]	[more]
KAG7015279.1	2.2e-68	87.74	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023529806.1	3.7e-68	87.10	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of Pay0010978.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	7.6e-64	73.68	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	2.5e-62	74.84	S phase kinase-associated protein 1	[more]
AT1G20140.1	5.0e-55	68.13	SKP1-like 4	[more]
AT2G25700.1	2.1e-53	66.88	SKP1-like 3	[more]
AT4G34210.1	2.1e-53	68.63	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 5.6E-49 score: 178.7
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 2..155 e-value: 2.8E-72 score: 243.9
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 2.2E-27 score: 95.0
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 1.7E-65 score: 217.1
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 6.01912E-58 score: 174.703
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0010978	Pay0010978	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0010978.1-exon	Pay0010978.1-exon-chr01:16824491..16824949	exon
Pay0010978.1-exon	Pay0010978.1-exon-chr01:16825869..16826263	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0010978.1-three_prime_utr	Pay0010978.1-three_prime_utr-chr01:16824491..16824775	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0010978.1-cds	Pay0010978.1-cds-chr01:16824776..16824949	CDS
Pay0010978.1-cds	Pay0010978.1-cds-chr01:16825869..16826162	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0010978.1-five_prime_utr	Pay0010978.1-five_prime_utr-chr01:16826163..16826263	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0010978.1	Pay0010978.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity