Pay0006395.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0006395.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonucloprotein
Location	chr02: 15244523 .. 15246716 (-)
Sequence length	847
RNA-Seq Expression	Pay0006395.1
Synteny	Pay0006395.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCCATAGCTCTCTCTATCGCCGTTCTAAAACCCTAATTTCAAAGTCTCATCTCCTCCTCCAAAGTCCTCAAAATCCTTCTTCTCTGCTTCCTTAATCTTCATACGAACAATGGTACTCTCTCTTTCTCTTTCTCTTCTTTTTCTGTTTCTGTTTCATATTGACTGTGAATTTATGTATTTGTGATGTAAATTCGCAGACTGCAGAGCAAGTGAACCCCAAGGCGTACCCTTTGGCCGACGCTCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTACTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGGTTGACTAGAGACACATTCTAGAGTTTCATAATACATGACTTGTTTCTACTCTGTATGTTCTGTGAAATGATTCTTCATTTTCTGTGATTTTTCAGCAACCAAGACGCTTAACAGAGGTATATCTGAGTTCGTCGTAATGGCTGCGGATACGGAGCCTCTTGAAATCCTCCTACATCTTCCTCTGTTAGCTGAGGATAAGGTAGTCTTCAATACTCAACAGAGGATTTTTTTTTTCTTTCCGTTTGGAATCTTTATGTTTTTTCTGCTTGATGTGTTATCTGGGTTTGGAGGCTACATGTACCAAGATAGTTGTGTGAAAGTATTACTGATACCCTTGTTCTTGACCTGCCAAAGAGGCTGTAGCTAAATTAGATTTGAGAAGTTAACTGGCCGGTTGCTGTTATCTGTCGACAAATCTGCTTACCGAAGTTCTTTTACATTTTCCTTACCTTTCCTTAATAAGATCGAAGATGTTTATTTACATTTCTCCCTTTAAATGACTAACTAAACATTATATGGAGAGATGAGGGTAACTGCATGGAGTTTTACCTTTTCTGAATTTCTACATATTTTTGAGAAGTTGCACTTGGTTTTCAGTAGTTTGCATCTACTGTTTCTGTTTCTGTCATGATGTCGATCAGTAGTTCAACTGACTACAACTGTGATCCCCAGCCCTCCTCCAGTCTCTCTAGTTGACATACCCCAATGAACTGCTCCAAACCTTTATCTTTGAAAGCTTCTTAGTGGTGCTCATTTATTGGCAGCTTTTCATTCTGTGTGTGTGTGTGTGTGTAATGTTAAGGATTTCAATAATTACAACCTTCAAAAGCCAAAGACCACTCCCCCAATGTTGCCTACAACCCCTCCCAATTTGTGTTGATTACAAAAGGGGATTATGATTTAAAAACGTATCAATAGATATTGTCTGTTTTTTTCTTTTTCCATGGTTCTCTTGGCATGCTATTTTCAATTATTTTAATACATCATGAATTGGGACAAGAAAACTTTAGTTGGAAGCAGTTGGCCTTCCTGCTGATTGTTATTTTATCCAGTCATGGTTTTTTGCACGGAACGACCTTACTTGAACAGGATCTATTTTATAGGTTGCACAATTGTGTCCGTGATCCGAATTTTGAACATAACTTCAGTATTCTACTTTTAGTATGAAAACAGGACTGTCAAAATTACGTTGCTGGATGTTTCCATTCTACATTTTGATGGTCCGCTTCAAAGTAATGATGCAAACAGTGTTCTATTTGATTTTACAGAATGTGCCCTATGTGTTCGTCCCATCTAAGCAAGCACTTGGCCGAGCCTGCGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTTAAGGTAATTGTGCCAGTATTGATTGACTGATACCAGTAAATATCTTTTCTTTTCTAAATGACCCTTATGTTATTGCTTTTCTGTTTTGATATTTATTTAGGATGCGATCGAGAAGCTTTTGATTTGAAGATGTAGGGAATTGTGATTTCGGTATGATGGGCTTCTTGGTTCATAGTGGTTCGCTCCCTTAGAGGCTTTGACTGATGTGAGTTGTGCAAGTAGAGGAATATGTGTAACAAAACACTACAATTTTCTTTTTCAAGAGATACGATTTATTTCATTAAAAATGATAACGTGATCCTTCATTCTGTTTGCCATACCTTGATGTTAGCCATCTTGTTTCTTTCAGCAAGATTTGGTTAGATATTTGACATTAAATTTTTCTAAGGCTATACTTTCAATAAAGTTTAAATTTAGGGTGAATTCTAAAAATAGTAAAGTGAACGAAATATTCAACACTTGAAATCAAGTACAG

mRNA sequence

GAATCCATAGCTCTCTCTATCGCCGTTCTAAAACCCTAATTTCAAAGTCTCATCTCCTCCTCCAAAGTCCTCAAAATCCTTCTTCTCTGCTTCCTTAATCTTCATACGAACAATGACTGCAGAGCAAGTGAACCCCAAGGCGTACCCTTTGGCCGACGCTCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTACTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTTAACAGAGGTATATCTGAGTTCGTCGTAATGGCTGCGGATACGGAGCCTCTTGAAATCCTCCTACATCTTCCTCTGTTAGCTGAGGATAAGAATGTGCCCTATGTGTTCGTCCCATCTAAGCAAGCACTTGGCCGAGCCTGCGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTTAAGGATGCGATCGAGAAGCTTTTGATTTGAAGATGTAGGGAATTGTGATTTCGGTATGATGGGCTTCTTGGTTCATAGTGGTTCGCTCCCTTAGAGGCTTTGACTGATGTGAGTTGTGCAAGTAGAGGAATATGTGTAACAAAACACTACAATTTTCTTTTTCAAGAGATACGATTTATTTCATTAAAAATGATAACGTGATCCTTCATTCTGTTTGCCATACCTTGATGTTAGCCATCTTGTTTCTTTCAGCAAGATTTGGTTAGATATTTGACATTAAATTTTTCTAAGGCTATACTTTCAATAAAGTTTAAATTTAGGGTGAATTCTAAAAATAGTAAAGTGAACGAAATATTCAACACTTGAAATCAAGTACAG

Coding sequence (CDS)

ATGACTGCAGAGCAAGTGAACCCCAAGGCGTACCCTTTGGCCGACGCTCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTACTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTTAACAGAGGTATATCTGAGTTCGTCGTAATGGCTGCGGATACGGAGCCTCTTGAAATCCTCCTACATCTTCCTCTGTTAGCTGAGGATAAGAATGTGCCCTATGTGTTCGTCCCATCTAAGCAAGCACTTGGCCGAGCCTGCGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTTAAGGATGCGATCGAGAAGCTTTTGATTTGA

Protein sequence

MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

[Close]

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 103/128 (80.47%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQ+ NYKQ++KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

Query: 121 DAIEKLLI 129
            AIE+LL+
Sbjct: 121 QAIERLLV 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 103/128 (80.47%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQA NYKQ++KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL
Match: A0A5A7TTN0 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00820 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL
Match: A0A1S3BA71 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103487460 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL
Match: A0A5D3DUD4 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G00070 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.6e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           +TAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 4   LTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 63

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 64  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 123

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 124 DAIEKLLI 131

[Close]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL
Match: A0A6J1KF93 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAE+VNPKAYPLADAQLTITILDLVQQA NYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL
Match: A0A6J1CUC5 (Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAE+VNPKAYPLADAQLTITILDLVQQA NYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. NCBI nr
Match: XP_008444011.1 (PREDICTED: NHP2-like protein 1 [Cucumis melo] >KAA0046792.1 NHP2-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 4.2e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. NCBI nr
Match: TYK26925.1 (NHP2-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 9.4e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           +TAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 4   LTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 63

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 64  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 123

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 124 DAIEKLLI 131

[Close]

BLAST of Pay0006395.1 vs. NCBI nr
Match: XP_038879798.1 (NHP2-like protein 1 [Benincasa hispida])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAE+VNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. NCBI nr
Match: XP_022144838.1 (NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like protein 1 [Cucurbita moschata] >XP_023001012.1 NHP2-like protein 1 [Cucurbita maxima] >XP_023516369.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023529528.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >KAG7023526.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAE+VNPKAYPLADAQLTITILDLVQQA NYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. NCBI nr
Match: KAG6589855.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAE+VNPKAYPLADAQLTITILDLVQQA NYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 802 MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 861

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 862 EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 921

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 922 DAIEKLLI 929

[Close]

BLAST of Pay0006395.1 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-61
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQATNYKQ+KKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 2.9e-61
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITI+DLVQQATNYKQ+KKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-61
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQATNYKQ+KKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Pay0006395.1 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 119/160 (74.38%), Postives = 123/160 (76.88%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANE------------------- 60
           MT E VNPKAYPLAD+QL+ITILDLVQQATNYKQ+KKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 121 LGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 129
           LGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of Pay0006395.1 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53
Identity = 118/183 (64.48%), Postives = 123/183 (67.21%), Query Frame = 0


Query: 1   MTAEQVNPKAYPLADAQLTITILDLVQQATNYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQATNYKQ+KKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 -----------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 129
                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

The following BLAST results are available for this feature:

BLAST of Pay0006395.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	4.9e-53	80.47	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	4.9e-53	80.47	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	1.2e-51	78.91	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	1.2e-51	78.91	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	1.2e-51	78.91	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of Pay0006395.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTN0	2.1e-62	100.00	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G008...	[more]
A0A1S3BA71	2.1e-62	100.00	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103487460 PE=3 SV=1	[more]
A0A5D3DUD4	4.6e-62	99.22	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G000...	[more]
A0A6J1KF93	2.3e-61	98.44	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1	[more]
A0A6J1CUC5	2.3e-61	98.44	Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1	[more]

BLAST of Pay0006395.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444011.1	4.2e-62	100.00	PREDICTED: NHP2-like protein 1 [Cucumis melo] >KAA0046792.1 NHP2-like protein 1 ...	[more]
TYK26925.1	9.4e-62	99.22	NHP2-like protein 1 [Cucumis melo var. makuwa]	[more]
XP_038879798.1	1.2e-61	99.22	NHP2-like protein 1 [Benincasa hispida]	[more]
XP_022144838.1	4.7e-61	98.44	NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like p...	[more]
KAG6589855.1	4.7e-61	98.44	NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Pay0006395.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	1.7e-61	92.97	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	2.9e-61	92.19	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	3.8e-61	92.19	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	1.7e-56	74.38	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	1.7e-53	64.48	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 21..36 score: 58.75 coord: 82..94 score: 83.08 coord: 8..21 score: 62.86
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 70..80 score: 59.09 coord: 35..49 score: 46.06 coord: 80..94 score: 51.21 coord: 54..67 score: 48.7
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 2.3E-26 score: 91.4
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..128 e-value: 1.3E-57 score: 195.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 6..126
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..128
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..128
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0006395	Pay0006395	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0006395.1-three_prime_utr	Pay0006395.1-three_prime_utr-chr02:15244523..15244870	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0006395.1-exon	Pay0006395.1-exon-chr02:15244523..15244897	exon
Pay0006395.1-exon	Pay0006395.1-exon-chr02:15244995..15245126	exon
Pay0006395.1-exon	Pay0006395.1-exon-chr02:15246196..15246299	exon
Pay0006395.1-exon	Pay0006395.1-exon-chr02:15246396..15246516	exon
Pay0006395.1-exon	Pay0006395.1-exon-chr02:15246602..15246716	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0006395.1-cds	Pay0006395.1-cds-chr02:15244871..15244897	CDS
Pay0006395.1-cds	Pay0006395.1-cds-chr02:15244995..15245126	CDS
Pay0006395.1-cds	Pay0006395.1-cds-chr02:15246196..15246299	CDS
Pay0006395.1-cds	Pay0006395.1-cds-chr02:15246396..15246516	CDS
Pay0006395.1-cds	Pay0006395.1-cds-chr02:15246602..15246604	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0006395.1-five_prime_utr	Pay0006395.1-five_prime_utr-chr02:15246605..15246716	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0006395.1	Pay0006395.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003723	RNA binding