Pay0001530.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0001530.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr03: 13903627 .. 13904876 (-)
Sequence length	990
RNA-Seq Expression	Pay0001530.1
Synteny	Pay0001530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAGACTTCCAAAAAATTCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGTCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCATCTACCACATCAACATCCTCTGATCCAGAATCATCTACAGGGCCTCTTACAGCTGTTGCTGTCACTGAGCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAAACCGTTCGAGGACATCTGTTAAACCATATGTCTGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTACCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGAAAAAAATATGTAGTTGGAAAATGGCTACAATTCAAGATGACTGATGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCATCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTACTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAAGGAAGGTTATTTTAAAGCTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGTCGGGCTTAA

mRNA sequence

ATGTCGATCAAGACTTCCAAAAAATTCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGTCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCATCTACCACATCAACATCCTCTGATCCAGAATCATCTACAGGGCCTCTTACAGCTGTTGCTGTCACTGAGCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAAACCGTTCGAGGACATCTGTTAAACCATATGTCTGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTACCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGAAAAAAATATGTAGTTGGAAAATGGCTACAATTCAAGATGACTGATGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTACTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAAGGAAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGTCGGGCTTAA

Coding sequence (CDS)

ATGTCGATCAAGACTTCCAAAAAATTCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGTCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCATCTACCACATCAACATCCTCTGATCCAGAATCATCTACAGGGCCTCTTACAGCTGTTGCTGTCACTGAGCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAAACCGTTCGAGGACATCTGTTAAACCATATGTCTGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTACCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGAAAAAAATATGTAGTTGGAAAATGGCTACAATTCAAGATGACTGATGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTACTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAAGGAAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGTCGGGCTTAA

Protein sequence

MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTSSDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTKDIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTDGECVFMGNSATAGVIGKRKEPGVWESVESGRA

Homology

[Close]

BLAST of Pay0001530.1 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 6.2e-180
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVTEQVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTDGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT DGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKRKEPGVWESVESGRA 330
           VFMGNSATAGVIGK KEPGVWESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0001530.1 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.3e-173
Identity = 320/392 (81.63%), Postives = 324/392 (82.65%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. ExPASy TrEMBL
Match: A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.3e-173
Identity = 320/392 (81.63%), Postives = 323/392 (82.40%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+M DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 8.1e-172
Identity = 304/316 (96.20%), Postives = 308/316 (97.47%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVTEQVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTDGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT DGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKRK 317
           VFMGNSATAGVIGK K
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0001530.1 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.5e-165
Identity = 307/379 (81.00%), Postives = 311/379 (82.06%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 639.8 bits (1649), Expect = 1.3e-179
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVTEQVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTDGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT DGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKRKEPGVWESVESGRA 330
           VFMGNSATAGVIGK KEPGVWESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0001530.1 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 6.8e-173
Identity = 320/392 (81.63%), Postives = 324/392 (82.65%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. NCBI nr
Match: TYK24060.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 6.8e-173
Identity = 320/392 (81.63%), Postives = 323/392 (82.40%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+M DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 612.8 bits (1579), Expect = 1.7e-171
Identity = 304/316 (96.20%), Postives = 308/316 (97.47%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVTEQVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTDGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT DGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKRK 317
           VFMGNSATAGVIGK K
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0001530.1 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 591.3 bits (1523), Expect = 5.2e-165
Identity = 307/379 (81.00%), Postives = 311/379 (82.06%), Query Frame = 0


Query: 1   MSIKTSKKFLPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTS 60
           MSIKTS K LPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPP+TTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTK 120
           SDPESSTGPLTAVAVT+QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQF+MTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTTD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDT D
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0001530.1 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-14
Identity = 43/173 (24.86%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 15  KLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPSTTSTSSDPESSTGPLTAVA 74
           K+   DG +Y  W+ ++ +F +QL++ YVL      S+P  +  +S  PE++   +T   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------SEPCPSIGSSQGPETNPREITRAD 253

Query: 75  VTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ-KSTKDIWSTLESRYGGD 134
            T           +K+ +D+     HL+N +SD ++  +  + K  K++W  L+  Y  D
Sbjct: 254 AT----------GKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCD 313

Query: 135 DAGRKKYVVGKWLQFKMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL 187
           ++  K+  V K+++F+M +++P++EQ+  +  +  +++S GM + E    + +
Sbjct: 314 ESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTI 350

The following BLAST results are available for this feature:

BLAST of Pay0001530.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE75	6.2e-180	96.35	uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=...	[more]
A0A5D3CNJ2	3.3e-173	81.63	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DL36	3.3e-173	81.63	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CM58	8.1e-172	96.20	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZI1	2.5e-165	81.00	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0001530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445782.1	1.3e-179	96.35	PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]	[more]
TYK11996.1	6.8e-173	81.63	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24060.1	6.8e-173	81.63	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11299.1	1.7e-171	96.20	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	5.2e-165	81.00	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	1.4e-14	24.86	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 218..234 e-value: 0.0059 score: 25.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 219..234 score: 9.504374
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 92..183 e-value: 5.3E-10 score: 39.2
None	No IPR available	GENE3D	4.10.60.10		coord: 174..251 e-value: 2.7E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 17..316
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 17..316
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 202..240

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0001530	Pay0001530	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001530.1-cds	Pay0001530.1-cds-chr03:13903627..13903668	CDS
Pay0001530.1-cds	Pay0001530.1-cds-chr03:13903740..13904130	CDS
Pay0001530.1-cds	Pay0001530.1-cds-chr03:13904320..13904876	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001530.1-exon	Pay0001530.1-exon-chr03:13903627..13903668	exon
Pay0001530.1-exon	Pay0001530.1-exon-chr03:13903740..13904130	exon
Pay0001530.1-exon	Pay0001530.1-exon-chr03:13904320..13904876	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0001530.1	Pay0001530.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding