PI0028891.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0028891.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr10: 18149091 .. 18152306 (+)
Sequence length	1767
RNA-Seq Expression	PI0028891.1
Synteny	PI0028891.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACTGCATATCGCCCCCTTCGCTTTCCATTCAGAAACCCTAGCAAACCCCTCAAATCCTCCCGAAGTTCACTCTCGTACTCCATCGGATGTTCGAATCTAAAGGGTCAATGTCGTGCGAACTGGGAGACGAAGAATTTCAAGAATTCTTATCACAGTGGACTGATCCTTTCTATTCAATTTAAAACTCTGCTTCTACTTCGATCTCAATACCAGTGACTGATCTCCGAGGCCAAGAAGATTGGATTGCAGCAGTGGCTAGATTCTGGCATTGTAAGCTCTTGTCTTCTATATGTCCTGTTCTAAAAAAACGTCAGTTCTCTCCGAACGTCATCGTTCAGCCGTATTTACATTTTCTACCCAGCAGATAAAAGGCGCGTCAGTGCTAGTCATCAGAGTCATATACGCCGCACGGCGGCATATCGCCCCCTTCGGTTTCCGTTCAGAAACCCTAGCAAACCCCTCAAATCCTCCCGAAGTTCATTGTCGTACTCCATTGGATGTTCGAATCTAAAGAGCCGATGGCGTGCGAACTGGGAGACGAAGAATTTCAAGAATTCTTATTACAGTGTACCGATCCTTTCTATTCTATTTAAAACTCTGCTTCTACTTCGATCTCGATACCAGTGACTGATCTCCGAGGCCAAGAAGATTGGATTACAGCAGTGGCTAGATTCTGGCATTGTAAGCTCTTGTCTTCTATTTATTCTTGTTTCTTTTTCTACATGTTAATATAACCTATGTCAATATAATTGTGGATCCTTTTGTAAAAGATGCTGATCTTTAATTAATTTGCCATGCTGAAGTTGTTTTGAATATTTATCTCAAAACTGCACTGTGAGAGATGAGGTTGATCTATACTTTTTGAAGTGGAATTGTTGAGTAGATTTTAGTTTGCAGTATCTATCTCATTGAATTTTCTATAATTGTGGATGCTTTTGTAAAAGATGTTGATCTTTAATTAATTTGCCATGCTGAAGCTGTTTTGAATATTTATCTCAAAACTGCATTGTGAGAGATGAGGTTGATCTAGACTTTTTGAAGTGGAATTGTTATTGAATTTTCTACTAAAGATCAATCTCATTGAATTTTCTACTTTCCAGATAGCAATTGCCTTTCCCGATGATGGAGCATAGAAGAAATTTCATAACAGCTGCAGCATTTCCTACGGTACATATACTATATTGACTCTAATATCATCCTTGGCACGAAGAGAGCATCATATTGACTTTCTGAGGTTCATAATTGATATAAATAAATGAAGAAGTCAAGTCTAATAAACTTTGCAAAACTTAAAGGGAGTTGAAATTAAGGTTTTTTATTTATTTATTTATTTATTATTATTATTATTATTTTTTTTTTTTTTGTTAAATTACAAATTTGGTATCTAAGGGGAAAGTTAAATTTGGTATCTATAATTTTAAAAGTCGGAATTTAGTTCTTTTAGTTTGATAAACTTCATAATTAGTTCCTATGATTAGATAAACTTTGCATAACTAGCTGTGGAGTCGAGAGTTTAAGAGACCAGAATGTGATTTTCATATGTTGCAACTACAAAGCTAGAAGGTCTGGAACAGGAAGGATAGTATGGACAAGTTTTTATGTGAAAATTGGTTGATGAACTAAGGCTGGGACCAATTAGGATTTGACATCATCTTCCTCATCTTCTTCCTGTTGGAAGTGTGATCAAAGTGTTACATTGGTCAGATAAAAGGAAGATTATGAATGTATAAGTGAATTGAAAACATTTTTAGGCATTTTGGAGGAACCCGAAAACAATTATTCTGAGACACACCACGAAGTGTAGTGGAGTCCTATCAAGGCAATTTGTTTTAAAGAAAATTTGGTCTAGATAAAAGCTACACCGATGGAGATGACTATTTAAGGATGTTGTCATCACTTGTATACCATGATGTCTATTGTGATGATATGTAAAGAATCTTTGAGTGTCAACATAAAAGTTGTGTCTTGGAATATATAGTTATAGCAAAGACCGAAGATTCGTATAGTTGAGCCCTATGAAGGAAGTGTTTTCTAAAGAAAATTTGGTCTAGATAAGAGCTACACAGACATATGAATATTTAAGGAGAGGTTTGGTGGTACTTTTTAAGATTGTTGGAAATACGACCAAAGTCTCACATTAGCTAACATGAAAATCATAAATATATAAGTGATGACAAAATCTTATCCATTGATACAGGGATTTTAGGTGAAACTAAATGTAAAGTCACGAAGGCTTTAGTAGACAAACTCCAAAGCAAACACGTTGACGTGATGATTCACATGTCTAATGAAATCTTTAATCAACAAAATTTGATGCATTGCGATAGGTTCAACCATGCCACTTGGTCCTTTTGGGGATTGATGCATTTTGGACCTGTGCCTATAGGTTCAACTAGGCCGAAGGTCACTGCCAATTCCATAAGAAAAACTATGCCAGTTGCTCATTAGTTCGTTATTTTCTCAAGATCTGTTTCAATTATGCTATCCTGAGCTACTCAACTAACTCAACTATTAACACAAAGACATGCCTACTTGATCATGCATACTTGATCATGCATACTTTGATCATGAGATTAGAGATTTAACTTCTGTTTAAAAAAGGTCCATTTTAACACAAATTACATATGTGATGAAAACTCTTTAAAACTAAATTATAACAGTATTATAGGGAAGTTTAAACTGGTTATTAGAAAAATGAGATTTAAAAGAAGTCCAACATGGTTATTTTCTTCTCCATTGAATGAAATAAATATTTGGTTAAATTATAAGTTCAGTCCTCAAACTTTAAGTTTGTGTTTATTTGTTTGTTAAACTTTGAAAGGTGTTTAATAGATTCTTTAACTTTTAATTTTCTATCTTACTGTCTCCATCAAGTTCAAAATAGGGGTAGTTTCAAGAATAATGTTTTTTTTTTCAAACTAATGACAAAAAAATAGAGTAGATTTGAAAGAATAAACAAAAAATAGTTAAAGTTCAAACTATCCTAACAAATAGGGTGATTTTGACAACCAGAGGTTGGCCTATTGATAAAAAGAAGACATAGTATCAATAATCAAATGGAAGCAATCTTTTAAAAGTTTAAAAGCTCCTTACGAGACATTATCTCAATCTTTTTTTTCTCCATATTTTCTTCTCAAATCTCAATCCATAACATTTTTTTTGTGCAAAATAACTTTGTTACAGGTTCTAACCAAAATCATTTTGCATATTTT

mRNA sequence

CACAACTGCATATCGCCCCCTTCGCTTTCCATTCAGAAACCCTAGCAAACCCCTCAAATCCTCCCGAAGTTCACTCTCGTACTCCATCGGATGTTCGAATCTAAAGGGTCAATGTCGTGCGAACTGGGAGACGAAGAATTTCAAGAATTCTTATCACAGTGGACTGATCCTTTCTATTCAATTTAAAACTCTGCTTCTACTTCGATCTCAATACCAGTGACTGATCTCCGAGGCCAAGAAGATTGGATTGCAGCAGTGGCTAGATTCTGGCATTGTAAGCTCTTGTCTTCTATATGTCCTGTTCTAAAAAAACGTCAGTTCTCTCCGAACGTCATCGTTCAGCCGTATTTACATTTTCTACCCAGCAGATAAAAGGCGCGTCAGTGCTAGTCATCAGAGTCATATACGCCGCACGGCGGCATATCGCCCCCTTCGGTTTCCGTTCAGAAACCCTAGCAAACCCCTCAAATCCTCCCGAAGTTCATTGTCGTACTCCATTGGATGTTCGAATCTAAAGAGCCGATGGCGTGCGAACTGGGAGACGAAGAATTTCAAGAATTCTTATTACAGTGTACCGATCCTTTCTATTCTATTTAAAACTCTGCTTCTACTTCGATCTCGATACCAGTGACTGATCTCCGAGGCCAAGAAGATTGGATTACAGCAGTGGCTAGATTCTGGCATTATAGCAATTGCCTTTCCCGATGATGGAGCATAGAAGAAATTTCATAACAGCTGCAGCATTTCCTACGGGATTTTAGGTGAAACTAAATGTAAAGTCACGAAGGCTTTAGTAGACAAACTCCAAAGCAAACACGTTGACGTGATGATTCACATGTCTAATGAAATCTTTAATCAACAAAATTTGATGCATTGCGATAGGTTCAACCATGCCACTTGGTCCTTTTGGGGATTGATGCATTTTGGACCTGTGCCTATAGGTTCAACTAGGCCGAAGGTCACTGCCAATTCCATAAGAAAAACTATGCCAGTTGCTCATTAGTTCGTTATTTTCTCAAGATCTGTTTCAATTATGCTATCCTGAGCTACTCAACTAACTCAACTATTAACACAAAGACATGCCTACTTGATCATGCATACTTGATCATGCATACTTTGATCATGAGATTAGAGATTTAACTTCTGTTTAAAAAAGGTCCATTTTAACACAAATTACATATGTGATGAAAACTCTTTAAAACTAAATTATAACAGTATTATAGGGAAGTTTAAACTGGTTATTAGAAAAATGAGATTTAAAAGAAGTCCAACATGGTTATTTTCTTCTCCATTGAATGAAATAAATATTTGGTTAAATTATAAGTTCAGTCCTCAAACTTTAAGTTTGTGTTTATTTGTTTGTTAAACTTTGAAAGGTGTTTAATAGATTCTTTAACTTTTAATTTTCTATCTTACTGTCTCCATCAAGTTCAAAATAGGGGTAGTTTCAAGAATAATGTTTTTTTTTTCAAACTAATGACAAAAAAATAGAGTAGATTTGAAAGAATAAACAAAAAATAGTTAAAGTTCAAACTATCCTAACAAATAGGGTGATTTTGACAACCAGAGGTTGGCCTATTGATAAAAAGAAGACATAGTATCAATAATCAAATGGAAGCAATCTTTTAAAAGTTTAAAAGCTCCTTACGAGACATTATCTCAATCTTTTTTTTCTCCATATTTTCTTCTCAAATCTCAATCCATAACATTTTTTTTGTGCAAAATAACTTTGTTACAGGTTCTAACCAAAATCATTTTGCATATTTT

Coding sequence (CDS)

ATGTCCTGTTCTAAAAAAACGTCAGTTCTCTCCGAACGTCATCGTTCAGCCGTATTTACATTTTCTACCCAGCAGATAAAAGGCGCGTCAGTGCTAGTCATCAGAGTCATATACGCCGCACGGCGGCATATCGCCCCCTTCGGTTTCCGTTCAGAAACCCTAGCAAACCCCTCAAATCCTCCCGAAGTTCATTGTCGTACTCCATTGGATGTTCGAATCTAA

Protein sequence

MSCSKKTSVLSERHRSAVFTFSTQQIKGASVLVIRVIYAARRHIAPFGFRSETLANPSNPPEVHCRTPLDVRI

Homology

The following BLAST results are available for this feature:

BLAST of PI0028891.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028891.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028891.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028891.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0028891	PI0028891	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028891.1-five_prime_utr	PI0028891.1-five_prime_utr-chr10:18149091..18149383	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028891.1-exon	PI0028891.1-exon-chr10:18149091..18149775	exon
PI0028891.1-exon	PI0028891.1-exon-chr10:18150195..18150261	exon
PI0028891.1-exon	PI0028891.1-exon-chr10:18151292..18152306	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028891.1-cds	PI0028891.1-cds-chr10:18149384..18149605	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028891.1-three_prime_utr	PI0028891.1-three_prime_utr-chr10:18149606..18149775	three_prime_UTR
PI0028891.1-three_prime_utr	PI0028891.1-three_prime_utr-chr10:18150195..18150261	three_prime_UTR
PI0028891.1-three_prime_utr	PI0028891.1-three_prime_utr-chr10:18151292..18152306	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0028891.1	PI0028891.1-protein	polypeptide