PI0028307.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0028307.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein Ycf2-like
Location	chr10: 3912298 .. 3913133 (+)
Sequence length	420
RNA-Seq Expression	PI0028307.1
Synteny	PI0028307.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTTACAGTTATCCCTTTCACCCTAACTTGCAATGAACTAATCTTTCCAAACTTTCAATTCTTCCTAAATGACCCACCAAATGAAGTTGAGAAAGAACAAAATGAAGAAACAGAAGATGAGAGTGAAGGAGGTGATAAAGAAGAAGAAACTGTAAATGATGAGACAAGAATATTCATAACCTGAATGATGAAGAGGTAAATATATTCGTTTTCTTTTGAACTGAGGTAAATATATTATTGTTTAAGGTATATTGGCATCACCTATATAACATATAAGTTATATAAGTGATACTAATATACATCATAAAGTAATAAATTTGTTGATATTGATTTACTGATATTACAGATTAATGAAGAAGAAATTGAACAAGAAGAAAATGCAGAAGAGCTAGAGCAAGCAATCGAGAATATTGATAAGTTCATCAATAATGTAATATATATTTAGTTTACCTACAGTAATTTCATTTTGTTGTTTCCCTTGTTTTAATAAAATTTTCTACTTATTCATCAAAGAGGGAAAAAGAGAATGAAGAAAAACAAATGAATGAAGATGAAAAAGAAAGTGAAGTTTTAAAAGAAGCACATGGCACAATTGTAAGTAATTTAGTATACATCTTGATACATTTGATAAAGTAAATTAGATATATCATCTGACTTATTCACCTATTTTCATACTATTTTCATACATCATAAAGTAATAAATTTGTTGATATTGATTTACTGATACTATAGATTAATGAAAAAGAAATTGAACAAGAAGAAAATGCAAAAGAGCTAGAGCAAGCAATCAAGGATATTGATAAGTGCATCAACAATGTAATATACATTTAG

mRNA sequence

ATGCAGTTTACAGTTATCCCTTTCACCCTAACTTGCAATGAACTAATCTTTCCAAACTTTCAATTCTTCCTAAATGACCCACCAAATGAAGTTGAGAAAGAACAAAATGAAGAAACAGAAGATGAGAGTGAAGGAGGTGATAAAGAAGAAGAAACTATTAATGAAGAAGAAATTGAACAAGAAGAAAATGCAGAAGAGCTAGAGCAAGCAATCGAGAATATTGATAAGTTCATCAATAATAGGGAAAAAGAGAATGAAGAAAAACAAATGAATGAAGATGAAAAAGAAAGTGAAGTTTTAAAAGAAGCACATGGCACAATTATTAATGAAAAAGAAATTGAACAAGAAGAAAATGCAAAAGAGCTAGAGCAAGCAATCAAGGATATTGATAAGTGCATCAACAATGTAATATACATTTAG

Coding sequence (CDS)

ATGCAGTTTACAGTTATCCCTTTCACCCTAACTTGCAATGAACTAATCTTTCCAAACTTTCAATTCTTCCTAAATGACCCACCAAATGAAGTTGAGAAAGAACAAAATGAAGAAACAGAAGATGAGAGTGAAGGAGGTGATAAAGAAGAAGAAACTATTAATGAAGAAGAAATTGAACAAGAAGAAAATGCAGAAGAGCTAGAGCAAGCAATCGAGAATATTGATAAGTTCATCAATAATAGGGAAAAAGAGAATGAAGAAAAACAAATGAATGAAGATGAAAAAGAAAGTGAAGTTTTAAAAGAAGCACATGGCACAATTATTAATGAAAAAGAAATTGAACAAGAAGAAAATGCAAAAGAGCTAGAGCAAGCAATCAAGGATATTGATAAGTGCATCAACAATGTAATATACATTTAG

Protein sequence

MQFTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEEEIEQEENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLKEAHGTIINEKEIEQEENAKELEQAIKDIDKCINNVIYI

Homology

[Close]

BLAST of PI0028307.1 vs. ExPASy TrEMBL
Match: A0A5D3CVC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1779G00060 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 80/167 (47.90%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +ELI PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELISPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINNVIYI 140
                          INE+EIEQE+NA+ELEQAIK+IDK INNVIYI
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINNVIYI 263

[Close]

BLAST of PI0028307.1 vs. ExPASy TrEMBL
Match: A0A5D3CVR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. ExPASy TrEMBL
Match: A0A5A7T6C2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00010 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EE EDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEEIEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLKEA 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 H-----------GTIINEKEIEQEENAKELEQAIKDIDKCINN 136
           H              INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 HLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. ExPASy TrEMBL
Match: A0A5D3B9P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00080 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. ExPASy TrEMBL
Match: A0A5A7SM53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00980 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 76/163 (46.63%), Postives = 97/163 (59.51%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 117 FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 176

Query: 63  -EIEQEEN-AEELEQAIE-----------NIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++ +N  E L+  +E           NI   IN R    ++ Q +  E  +  L   
Sbjct: 177 KEIQEVKNDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 236

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA++LEQAIK+IDK INN
Sbjct: 237 RLEERMNIHNLDDAEINEEEIEQEQNAEKLEQAIKNIDKFINN 278

[Close]

BLAST of PI0028307.1 vs. NCBI nr
Match: TYK14894.1 (hypothetical protein E5676_scaffold1779G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-16
Identity = 80/167 (47.90%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +ELI PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELISPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINNVIYI 140
                          INE+EIEQE+NA+ELEQAIK+IDK INNVIYI
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINNVIYI 263

[Close]

BLAST of PI0028307.1 vs. NCBI nr
Match: TYJ96590.1 (hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. NCBI nr
Match: KAA0036929.1 (hypothetical protein E6C27_scaffold86G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EE EDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEEIEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLKEA 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 H-----------GTIINEKEIEQEENAKELEQAIKDIDKCINN 136
           H              INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 HLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. NCBI nr
Match: TYK15460.1 (hypothetical protein E5676_scaffold477G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 157

Query: 63  -EIEQ------------EENAEELEQAIENIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++            E    E+ + + NI   IN R    ++ Q +  E  +  L   
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 217

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA+ELEQAIK+IDK INN
Sbjct: 218 RLEERMNIHNLDDAEINEEEIEQEQNAEELEQAIKNIDKFINN 259

[Close]

BLAST of PI0028307.1 vs. NCBI nr
Match: KAA0032264.1 (hypothetical protein E6C27_scaffold219G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 76/163 (46.63%), Postives = 97/163 (59.51%), Query Frame = 0


Query: 3   FTVIPFTLTCNELIFPNFQFFLNDPPNEVEKEQNEETEDESEGGDKEEETINEE------ 62
           FTVIPFT T +EL  PNFQFFLND PNEVEKE++EETEDE++ GD EEET+N+E      
Sbjct: 117 FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDENDKGD-EEETVNDETKKSLR 176

Query: 63  -EIEQEEN-AEELEQAIE-----------NIDKFINNREKENEEKQMNEDEKESEVLK-- 122
            EI++ +N  E L+  +E           NI   IN R    ++ Q +  E  +  L   
Sbjct: 177 KEIQEVKNDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSLQ 236

Query: 123 ---------EAHGTIINEKEIEQEENAKELEQAIKDIDKCINN 136
                          INE+EIEQE+NA++LEQAIK+IDK INN
Sbjct: 237 RLEERMNIHNLDDAEINEEEIEQEQNAEKLEQAIKNIDKFINN 278

The following BLAST results are available for this feature:

BLAST of PI0028307.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028307.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVC6	1.4e-16	47.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CVR6	6.6e-14	46.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T6C2	6.6e-14	46.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9P7	6.6e-14	46.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SM53	1.5e-13	46.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0028307.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14894.1	2.9e-16	47.90	hypothetical protein E5676_scaffold1779G00060 [Cucumis melo var. makuwa]	[more]
TYJ96590.1	1.4e-13	46.01	hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa]	[more]
KAA0036929.1	1.4e-13	46.01	hypothetical protein E6C27_scaffold86G00010 [Cucumis melo var. makuwa]	[more]
TYK15460.1	1.4e-13	46.01	hypothetical protein E5676_scaffold477G00300 [Cucumis melo var. makuwa]	[more]
KAA0032264.1	3.0e-13	46.63	hypothetical protein E6C27_scaffold219G00980 [Cucumis melo var. makuwa]	[more]

BLAST of PI0028307.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	COILS	Coil	Coil	coord: 48..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0028307	PI0028307	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028307.1-exon	PI0028307.1-exon-chr10:3912298..3912453	exon
PI0028307.1-exon	PI0028307.1-exon-chr10:3912649..3912732	exon
PI0028307.1-exon	PI0028307.1-exon-chr10:3912816..3912896	exon
PI0028307.1-exon	PI0028307.1-exon-chr10:3913035..3913133	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028307.1-cds	PI0028307.1-cds-chr10:3912298..3912453	CDS
PI0028307.1-cds	PI0028307.1-cds-chr10:3912649..3912732	CDS
PI0028307.1-cds	PI0028307.1-cds-chr10:3912816..3912896	CDS
PI0028307.1-cds	PI0028307.1-cds-chr10:3913035..3913133	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0028307.1	PI0028307.1-protein	polypeptide