PI0026814.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0026814.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr03: 977415 .. 977961 (+)
Sequence length	402
RNA-Seq Expression	PI0026814.1
Synteny	PI0026814.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACACGAGCAAGAAGACCAGTGCATATTTTTGGACTTTTCCTTCAAAAGAATACAAAAACTCAGGATCTAAACGTGATTTTGAAATGAACACCCACCAACTTGAAAACTCTCTCCCTTTTCCCAGTCTCTTTCGTTCGATTTGGAGCCTGAAGAAATTGATCCTTCTTCATTCAAGCACATCCAGTGCAAAGCATTTGAAATGATTTTCGAGTCTGAGATCTGAGTCATCTGCTACCTTGACGTGGCCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGATGACATTATTAGTGCAGAAAGGTCCTTTGTCTATGTTGGAATGGACTTTGTACCTCTACCTGTAGGGGCAGAGTTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCGGTTTTGAGGTTTGATGGGTTCGGTTTTTCTTTTATTCTTTTAATTAAAAAGTTCGTGGCTTTATAATTTATTAAAGTAACCCAGATGGCAGAAACTGTAAATTTATTCTCTACATACATTCAGCAGCAAAGACCTCGATTGA

mRNA sequence

ATGGGCAACACGAGCAAGAAGACCAGTGCATATTTTTGGACTTTTCCTTCAAAAGAATACAAAAACTCAGGATCTAAACGTGATTTTGAAATGAACACCCACCAACTTGAAAACTCTCTCCCTTTTCCCAGTCTCTTTCGTTCGATTTGGAGCCTGAAGAAATTGATCCTTCTTCATTCAAGCACATCCAGTTCATCTGCTACCTTGACGTGGCCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGATGACATTATTAGTGCAGAAAGGTCCTTTGTCTATGTTGGAATGGACTTTGTACCTCTACCTGTAGGGGCAGAGTTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCGGTTTTGAGGTTTGATGGCAGCAAAGACCTCGATTGA

Coding sequence (CDS)

ATGGGCAACACGAGCAAGAAGACCAGTGCATATTTTTGGACTTTTCCTTCAAAAGAATACAAAAACTCAGGATCTAAACGTGATTTTGAAATGAACACCCACCAACTTGAAAACTCTCTCCCTTTTCCCAGTCTCTTTCGTTCGATTTGGAGCCTGAAGAAATTGATCCTTCTTCATTCAAGCACATCCAGTTCATCTGCTACCTTGACGTGGCCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGATGACATTATTAGTGCAGAAAGGTCCTTTGTCTATGTTGGAATGGACTTTGTACCTCTACCTGTAGGGGCAGAGTTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCGGTTTTGAGGTTTGATGGCAGCAAAGACCTCGATTGA

Protein sequence

MGNTSKKTSAYFWTFPSKEYKNSGSKRDFEMNTHQLENSLPFPSLFRSIWSLKKLILLHSSTSSSSATLTWPFPILFSFFVYDDIISAERSFVYVGMDFVPLPVGAEFADAYGFPQFTLSPSVLRFDGSKDLD

Homology

[Close]

BLAST of PI0026814.1 vs. ExPASy TrEMBL
Match: A0A0A0LR42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.9e-60
Identity = 123/146 (84.25%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MGNTSKKTSAYFWTFPSKEYKNSGSKRDFEMNTHQLENSLPFPSLFRSIWSLKKLILLHS 60
           MGN +KKTSAYFWTFPSKEYKNSGSKRDFEM THQLENS P+PSL  SIWSLKKLILLHS
Sbjct: 1   MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQLENSHPYPSLLLSIWSLKKLILLHS 60

Query: 61  STSS-------------SSATLTWPFPILFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120
           S SS             SSATLTW FP+LFSFFVYDDIISAERSFVYVGMDFVPLPVGAE
Sbjct: 61  SISSAKHLRLFSSLRSESSATLTWAFPMLFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120

Query: 121 FADAYGFPQFTLSPSVLRFDGSKDLD 134
           FADAYGFPQFTLSPSVLRFDGSKDLD
Sbjct: 121 FADAYGFPQFTLSPSVLRFDGSKDLD 146

[Close]

BLAST of PI0026814.1 vs. NCBI nr
Match: KGN62446.1 (hypothetical protein Csa_018581 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59
Identity = 123/146 (84.25%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MGNTSKKTSAYFWTFPSKEYKNSGSKRDFEMNTHQLENSLPFPSLFRSIWSLKKLILLHS 60
           MGN +KKTSAYFWTFPSKEYKNSGSKRDFEM THQLENS P+PSL  SIWSLKKLILLHS
Sbjct: 1   MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQLENSHPYPSLLLSIWSLKKLILLHS 60

Query: 61  STSS-------------SSATLTWPFPILFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120
           S SS             SSATLTW FP+LFSFFVYDDIISAERSFVYVGMDFVPLPVGAE
Sbjct: 61  SISSAKHLRLFSSLRSESSATLTWAFPMLFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120

Query: 121 FADAYGFPQFTLSPSVLRFDGSKDLD 134
           FADAYGFPQFTLSPSVLRFDGSKDLD
Sbjct: 121 FADAYGFPQFTLSPSVLRFDGSKDLD 146

The following BLAST results are available for this feature:

BLAST of PI0026814.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026814.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR42	9.9e-60	84.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1	[more]

BLAST of PI0026814.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62446.1	2.0e-59	84.25	hypothetical protein Csa_018581 [Cucumis sativus]	[more]

BLAST of PI0026814.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0026814	PI0026814	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026814.1-exon	PI0026814.1-exon-chr03:977415..977606	exon
PI0026814.1-exon	PI0026814.1-exon-chr03:977646..977836	exon
PI0026814.1-exon	PI0026814.1-exon-chr03:977943..977961	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026814.1-cds	PI0026814.1-cds-chr03:977415..977606	CDS
PI0026814.1-cds	PI0026814.1-cds-chr03:977646..977836	CDS
PI0026814.1-cds	PI0026814.1-cds-chr03:977943..977961	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0026814.1	PI0026814.1-protein	polypeptide