PI0025538.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0025538.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	fibroin heavy chain-like isoform X47
Location	chr04: 32527596 .. 32528823 (+)
Sequence length	1077
RNA-Seq Expression	PI0025538.1
Synteny	PI0025538.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGACAGTGAATATACCTGCATTTGCTTATGGTGCTGGCAATGGTGGAGGTGGTGGAAGTGGTGGGATATGGTCCACTTGGTGGTGGTGGTGGAGGCTTTGGGGTGGGGGGGTGGTGGTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAGGCTATGGAAGTGGAGGGTGGAGGGGAAGTGGTGGTGGTGAAGGATATGGTCCTAGTGGTGGGCTATGGTGGAGGTGGAGGTGGTGGGAGTGGCGGTGGTTTGCTTATGGTCATGGTGGGTCTGCTTATGGAGTGGTGGAGGAAGTGGTGGAGGAGGTGGTTATGGTCCCGGTGGTGGTTGGGTATGGAGGGGGCGGTGGAAATGGTGGTGGAGCGGGCTATGGTCCTGGAGAAAGTAGTGGATATGGAGGTGTAGGATATGGTGGAGGTGGTGTAGTGGAGGTGGTGTGGGGTATGGCCCTGGAGGTGGAGGGTATGGAGGAGGCGGAGGAATGGGGAGGTGGGGCTGGATACGGTCCTGGAGGTGGAGCGTATGGAGGAGGTGGTGGAAATGGTGGTGGGGCAGGATATGGTCATGAAGGTGCAGGTTATGGAGGGGTGGTGGAAATGGCGGAGGAGGAGGATATGGTCATGAAGGTGCAGGGTATGGAGGGGGTGGTGGAAATGGTGTGGGGCAGGATATGGAGGGGGTGCTGAAAATGGCAGTGGAGGAGGATACGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAATGGGGGGTCATGGTCATGAAAGTGGAATATGGAGGCAGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGCGGTGGTCATGAACGTGGTGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGTAGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAATGGTGGTGGTCATGAAAGTGGAGGGTACGGAGGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGGTACGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAAAGCGGTGGTCATGAAAGTGGGGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGGAGGGATATGGAGGCAGTGGGGAGAAATGGCGGTGGTCATGAAAGTGGAGGAGGATCGGTCATGA

mRNA sequence

ATGGTGGAGGACAGTGAATATACCTGCATTTGCTTATGGTGCTGGCAATGGTGGAGGTGGTGGAAGTGGTGGGATATGGTCCACTTGGTGGTGGTGGTGGAGGCTTTGGGGTGGGGGGGTGGTGGTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAGGCTATGGAAGTGGAGGGTGGAGGGGAAGTGGTGGTGGTGAAGGATATGGTCCTAGTGGTGGGCTATGGTGGAGGTGGAGGTGGTGGGAGTGGCGGTGGTTTGCTTATGGTCATGGTGGGTCTGCTTATGGAGTGGTGGAGGAAGTGGTGGAGGAGGTGGTTATGGTCCCGGTGGTGGTTGGGTATGGAGGGGGCGGTGGAAATGGTGGTGGAGCGGGCTATGGTCCTGGAGAAAGTAGTGGATATGGAGGTGTAGGATATGGTGGAGGTGGTGTAGTGGAGGTGGTGTGGGGTATGGCCCTGGAGGTGGAGGGTATGGAGGAGGCGGAGGAATGGGGAGGTGGGGCTGGATACGGTCCTGGAGGTGGAGCGTATGGAGGAGGTGGTGGAAATGGTGGTGGGGCAGGATATGGTCATGAAGGTGCAGGTTATGGAGGGGTGGTGGAAATGGCGGAGGAGGAGGATATGGTCATGAAGGTGCAGGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGCGGTGGTCATGAACGTGGTGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGTAGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAATGGTGGTGGTCATGAAAGTGGAGGGTACGGAGGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGGTACGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAAAGCGGTGGTCATGAAAGTGGGGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGGAGGGATATGGAGGCAGTGGGGAGAAATGGCGGTGGTCATGAAAGTGGAGGAGGATCGGTCATGA

Coding sequence (CDS)

ATGGTGGAGGACAGTGAATATACCTGCATTTGCTTATGGTGCTGGCAATGGTGGAGGTGGTGGAAGTGGTGGGATATGGTCCACTTGGTGGTGGTGGTGGAGGCTTTGGGGTGGGGGGGTGGTGGTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAGGCTATGGAAGTGGAGGGTGGAGGGGAAGTGGTGGTGGTGAAGGATATGGTCCTAGTGGTGGGCTATGGTGGAGGTGGAGGTGGTGGGAGTGGCGGTGGTTTGCTTATGGTCATGGTGGGTCTGCTTATGGAGTGGTGGAGGAAGTGGTGGAGGAGGTGGTTATGGTCCCGGTGGTGGTTGGGTATGGAGGGGGCGGTGGAAATGGTGGTGGAGCGGGCTATGGTCCTGGAGAAAGTAGTGGATATGGAGGTGTAGGATATGGTGGAGGTGGTGTAGTGGAGGTGGTGTGGGGTATGGCCCTGGAGGTGGAGGGTATGGAGGAGGCGGAGGAATGGGGAGGTGGGGCTGGATACGGTCCTGGAGGTGGAGCGTATGGAGGAGGTGGTGGAAATGGTGGTGGGGCAGGATATGGTCATGAAGGTGCAGGTTATGGAGGGGTGGTGGAAATGGCGGAGGAGGAGGATATGGTCATGAAGGTGCAGGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGCGGTGGTCATGAACGTGGTGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGTAGTGGAGGAAATGGCGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAATGGTGGTGGTCATGAAAGTGGAGGGTACGGAGGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGGTACGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGTGGAGGATATGGAGGCAGTGGAGGAAAAGCGGTGGTCATGAAAGTGGGGGATATGGAGGCAGTGGAGGAAATGGAGGTGGTCATGAAAGGAGGGATATGGAGGCAGTGGGGAGAAATGGCGGTGGTCATGAAAGTGGAGGAGGATCGGTCATGA

Protein sequence

MVEDSEYTCICLWCWQWWRWWKWWDMVHLVVVVEALGWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSAYGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALEVEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGYGGVVEMAEEEDMVMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAVEEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGGGHESGGYGGSGGKAVVMKVGDMEAVEEMEVVMKGGIWRQWGEMAVVMKVEEDRS

Homology

[Close]

BLAST of PI0025538.1 vs. ExPASy TrEMBL
Match: A0A0A0LH77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902220 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.2e-28
Identity = 140/284 (49.30%), Postives = 143/284 (50.35%), Query Frame = 0


Query: 37  GWGGGGSYSSVG-QYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSA 96
           G GGGGSYSSVG QYGVGGYGSGG  GSGGGEGYGPSGG             AYGHGGSA
Sbjct: 67  GSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSAYGHGGSA 126

Query: 97  YGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALE 156
           YG            P   GYGGGGGNGGGA YGPGE SGYGGVGYGGGG      G    
Sbjct: 127 YGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVGYGGGGGSGGGVGYGPG 186

Query: 157 VEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGYGGVVEMAEEEDMVMKVQV 216
             G       GGGAGYG GG  YGGGGGNGGGAGYGHEGAGYGG                
Sbjct: 187 GGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHEGAGYGG---------------- 246

Query: 217 EEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAVEEMVVV 276
                                                                       
Sbjct: 247 ------------------------------------------------GGGNGGGASYGP 286

Query: 277 MKVEGTEG-SGGNGGGHESGGYGGSGGNGGGHESGGYGGSGGKA 319
            +  G  G  GGNGGGHESGGYGG+GGNGG HESGGYGGSGG +
Sbjct: 307 GEGSGYGGVGGGNGGGHESGGYGGNGGNGGSHESGGYGGSGGNS 286

[Close]

BLAST of PI0025538.1 vs. ExPASy TrEMBL
Match: A0A6J1DQA8 (glycine-rich cell wall structural protein 1.8 OS=Momordica charantia OX=3673 GN=LOC111023333 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 89/164 (54.27%), Postives = 93/164 (56.71%), Query Frame = 0


Query: 37  GWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSAY 96
           G GGGGSY SVG+YG GGYG GG  GSGGGEGYGP+GG          R   YG GG + 
Sbjct: 70  GGGGGGSYGSVGEYGAGGYGGGG--GSGGGEGYGPAGG----------RGAGYGGGGGSG 129

Query: 97  GVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALEV 156
           G                GYGGGGGNGGGAGYG    +GYGG G  GGG      G     
Sbjct: 130 GGAG--------YGPGGGYGGGGGNGGGAGYGGAGGAGYGGGGGSGGGAAYGGPGAGYGG 189

Query: 157 EGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGY-GHEGAGYGG 200
            G       GGGAGYG  G  YGGGGGNGGGAGY G  GAGYGG
Sbjct: 190 GGGS-----GGGAGYGGPGAGYGGGGGNGGGAGYGGASGAGYGG 208

[Close]

BLAST of PI0025538.1 vs. ExPASy TrEMBL
Match: A0A6J1HUK9 (uncharacterized transmembrane protein DDB_G0289901-like isoform X28 OS=Cucurbita maxima OX=3661 GN=LOC111466985 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 127/313 (40.58%), Postives = 131/313 (41.85%), Query Frame = 0


Query: 37  GWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRW--------------RWW 96
           G GGG  Y SVG+YGVGGYGSGG  GSG G GYGP GG  +                R+ 
Sbjct: 68  GNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGGYGSGVRYG 127

Query: 97  EWRWFAYGHGGSAYGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGES---------- 156
           E     YG GGS YG            P   GYGGGGGNGGGAGYGPG S          
Sbjct: 128 E---VGYGSGGSGYGGGSG--GGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGGGNGG 187

Query: 157 -SGYG--GVGYGGGGVVEVVWGMALEVEGMEEAEEWGGGAGYG-PGGGAYGGGGGNGGGA 216
            +GYG  G GYGGGG      G   E  G       GGGAGYG  GGG YGGGGGNGGGA
Sbjct: 188 GAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGGYGGGGGNGGGA 247

Query: 217 GYGHE-GAGYGGVVEMAEEEDMVMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMK 276
           GYGHE G GYGG                                                
Sbjct: 248 GYGHEGGGGYGG------------------------------------------------ 295

Query: 277 VEDMEVVEEMAVVMKVEDMEAVEEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGG--- 317
                                           G    GG G GHE GGYGG GGNGG   
Sbjct: 308 --------------------------------GGGNGGGAGYGHEGGGYGGGGGNGGGAG 295

[Close]

BLAST of PI0025538.1 vs. ExPASy TrEMBL
Match: A0A6J1HS53 (fibroin heavy chain-like isoform X20 OS=Cucurbita maxima OX=3661 GN=LOC111466985 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 127/313 (40.58%), Postives = 131/313 (41.85%), Query Frame = 0


Query: 37  GWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRW--------------RWW 96
           G GGG  Y SVG+YGVGGYGSGG  GSG G GYGP GG  +                R+ 
Sbjct: 68  GNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGGYGSGVRYG 127

Query: 97  EWRWFAYGHGGSAYGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGES---------- 156
           E     YG GGS YG            P   GYGGGGGNGGGAGYGPG S          
Sbjct: 128 E---VGYGSGGSGYGGGSG--GGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGGGNGG 187

Query: 157 -SGYG--GVGYGGGGVVEVVWGMALEVEGMEEAEEWGGGAGYG-PGGGAYGGGGGNGGGA 216
            +GYG  G GYGGGG      G   E  G       GGGAGYG  GGG YGGGGGNGGGA
Sbjct: 188 GAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGGYGGGGGNGGGA 247

Query: 217 GYGHE-GAGYGGVVEMAEEEDMVMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMK 276
           GYGHE G GYGG                                                
Sbjct: 248 GYGHEGGGGYGG------------------------------------------------ 295

Query: 277 VEDMEVVEEMAVVMKVEDMEAVEEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGG--- 317
                                           G    GG G GHE GGYGG GGNGG   
Sbjct: 308 --------------------------------GGGNGGGAGYGHEGGGYGGGGGNGGGAG 295

[Close]

BLAST of PI0025538.1 vs. ExPASy TrEMBL
Match: A0A6J1HS72 (ice nucleation protein-like isoform X34 OS=Cucurbita maxima OX=3661 GN=LOC111466985 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 127/313 (40.58%), Postives = 131/313 (41.85%), Query Frame = 0


Query: 37  GWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRW--------------RWW 96
           G GGG  Y SVG+YGVGGYGSGG  GSG G GYGP GG  +                R+ 
Sbjct: 68  GNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGGYGSGVRYG 127

Query: 97  EWRWFAYGHGGSAYGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGES---------- 156
           E     YG GGS YG            P   GYGGGGGNGGGAGYGPG S          
Sbjct: 128 E---VGYGSGGSGYGGGSG--GGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGGGNGG 187

Query: 157 -SGYG--GVGYGGGGVVEVVWGMALEVEGMEEAEEWGGGAGYG-PGGGAYGGGGGNGGGA 216
            +GYG  G GYGGGG      G   E  G       GGGAGYG  GGG YGGGGGNGGGA
Sbjct: 188 GAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGGYGGGGGNGGGA 247

Query: 217 GYGHE-GAGYGGVVEMAEEEDMVMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMK 276
           GYGHE G GYGG                                                
Sbjct: 248 GYGHEGGGGYGG------------------------------------------------ 295

Query: 277 VEDMEVVEEMAVVMKVEDMEAVEEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGG--- 317
                                           G    GG G GHE GGYGG GGNGG   
Sbjct: 308 --------------------------------GGGNGGGAGYGHEGGGYGGGGGNGGGAG 295

[Close]

BLAST of PI0025538.1 vs. NCBI nr
Match: XP_031738893.1 (glycine-rich cell wall structural protein 1.8 isoform X2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-22
Identity = 146/287 (50.87%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 37  GWGGGGSYSSVG-QYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSA 96
           G GGGGSYSSVG QYGVGGYGSGG  GSGGGEGYGPSGG             AYGHGGSA
Sbjct: 67  GSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSAYGHGGSA 126

Query: 97  YGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALE 156
           YG            P   GYGGGGGNGGGA YGPGE SGYGGVGYGGGG      G    
Sbjct: 127 YGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVGYGGGGGSGGGVGYGPG 186

Query: 157 VEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGY------GGVVEMAEEEDM 216
             G       GGGAGYG GG  YGGGGGNGGGAGYGHEGAGY      GG      E   
Sbjct: 187 GGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGGGYGHEGAG 246

Query: 217 VMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAV 276
                          E      N  +    E         +    E              
Sbjct: 247 YGGGGGNGGGGGYGHESGGYGGNGGNGGGHESGGYGGSGGNNGGHESGG----------- 306

Query: 277 EEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGGGHESGGYGGSGG 317
                     G+ G+GGNGG HESGGYGGSGGNGGGHESGGYGGSGG
Sbjct: 307 --------YGGSGGNGGNGGSHESGGYGGSGGNGGGHESGGYGGSGG 334

[Close]

BLAST of PI0025538.1 vs. NCBI nr
Match: XP_031738894.1 (glycine-rich cell wall structural protein 1.8 isoform X3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-21
Identity = 145/287 (50.52%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 37  GWGGGGSYSSVG-QYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSA 96
           G GGGGSYSSVG QYGVGGYGSGG  GSGGGEGYGPSGG             AYGHGGSA
Sbjct: 67  GSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSAYGHGGSA 126

Query: 97  YGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALE 156
           YG            P   GYGGGGGNGGGA YGPGE SGYGGVGYGGGG      G    
Sbjct: 127 YGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVGYGGGGGSGGGVGYGPG 186

Query: 157 VEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGY------GGVVEMAEEEDM 216
             G       GGGAGYG GG  YGGGGGNGGGAGYGHEGAGY      GG      E   
Sbjct: 187 GGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGGGYGHEGAG 246

Query: 217 VMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAV 276
                          E      N  +    E         +              +    
Sbjct: 247 YGGGGGNGGGGGYGHESGGYGGNGGNGGGHESGGYGGSGHESGGYGGSGGNNGGHESGG- 306

Query: 277 EEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGGGHESGGYGGSGG 317
                     G+ G+GGNGG HESGGYGGSGGNGGGHESGGYGGSGG
Sbjct: 307 --------YGGSGGNGGNGGSHESGGYGGSGGNGGGHESGGYGGSGG 344

[Close]

BLAST of PI0025538.1 vs. NCBI nr
Match: XP_031738892.1 (glycine-rich cell wall structural protein 1.8 isoform X1 [Cucumis sativus] >KAE8651439.1 hypothetical protein Csa_001535 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-21
Identity = 145/287 (50.52%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 37  GWGGGGSYSSVG-QYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSA 96
           G GGGGSYSSVG QYGVGGYGSGG  GSGGGEGYGPSGG             AYGHGGSA
Sbjct: 67  GSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSAYGHGGSA 126

Query: 97  YGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALE 156
           YG            P   GYGGGGGNGGGA YGPGE SGYGGVGYGGGG      G    
Sbjct: 127 YGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVGYGGGGGSGGGVGYGPG 186

Query: 157 VEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGY------GGVVEMAEEEDM 216
             G       GGGAGYG GG  YGGGGGNGGGAGYGHEGAGY      GG      E   
Sbjct: 187 GGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGGGYGHEGAG 246

Query: 217 VMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAV 276
                          E      N  +    E         +              +    
Sbjct: 247 YGGGGGNGGGGGYGHESGGYGGNGGNGGGHESGGYGGSGHESGGYGGSGGNNGGHESGG- 306

Query: 277 EEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGGGHESGGYGGSGG 317
                     G+ G+GGNGG HESGGYGGSGGNGGGHESGGYGGSGG
Sbjct: 307 --------YGGSGGNGGNGGSHESGGYGGSGGNGGGHESGGYGGSGG 344

[Close]

BLAST of PI0025538.1 vs. NCBI nr
Match: XP_031738895.1 (glycine-rich cell wall structural protein 1 isoform X4 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-20
Identity = 144/289 (49.83%), Postives = 149/289 (51.56%), Query Frame = 0


Query: 37  GWGGGGSYSSVG-QYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSA 96
           G GGGGSYSSVG QYGVGGYGSGG  GSGGGEGYGPSGG             AYGHGGSA
Sbjct: 67  GSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSAYGHGGSA 126

Query: 97  YGVVEEVVEEVVMVPVVVGYGGGGGNGGGAGYGPGESSGYGGVGYGGGGVVEVVWGMALE 156
           YG            P   GYGGGGGNGGGA YGPGE SGYGGVGYGGGG      G    
Sbjct: 127 YGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVGYGGGGGSGGGVGYGPG 186

Query: 157 VEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGY------GGVVEMAEEEDM 216
             G       GGGAGYG GG  YGGGGGNGGGAGYGHEGAGY      GG      E   
Sbjct: 187 GGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGGGYGHEGAG 246

Query: 217 VMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKVEDMEAV 276
                          E      N  +    E         +                   
Sbjct: 247 YGGGGGNGGGGGYGHESGGYGGNGGNGGGHESGGYGGSGHESGGYGGSGGGSH------- 306

Query: 277 EEMVVVMKVEGTEGSGGNGGGHESGGYGGSGGNGGGHESGGYGGSGGKA 319
                  +  G  G+GGNGGGHESGGYG SGGN GGHESGGYGGSGG +
Sbjct: 307 -------ESGGYGGNGGNGGGHESGGYGNSGGNSGGHESGGYGGSGGNS 341

[Close]

BLAST of PI0025538.1 vs. NCBI nr
Match: XP_038887344.1 (glycine-rich cell wall structural protein 1.8-like isoform X2 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-19
Identity = 135/298 (45.30%), Postives = 137/298 (45.97%), Query Frame = 0


Query: 37  GWGGGGSYSSVGQYGVGGYGSGGWRGSGGGEGYGPSGGLWWRWRWWEWRWFAYGHGGSAY 96
           G GGG SY S GQYGVGGYGSGG  GSGGG GYGPSGG             AYGHGGSAY
Sbjct: 69  GGGGGSSYGSEGQYGVGGYGSGGGGGSGGGGGYGPSGGYGGGGGGGSGGGSAYGHGGSAY 128

Query: 97  GVVEEVVEEVVMVPVVVGYGGGGGNGGGA-------GYGPGESSGYGGVGYGGGGVVEVV 156
           G      E V   P   GYGGGGGNGGGA       GYGPG  +GYGGVGYGGGG     
Sbjct: 129 GGGGGGGEGVGYGPGGGGYGGGGGNGGGAGYGPSGGGYGPGGGNGYGGVGYGGGGGSGGG 188

Query: 157 WGMALEVEGMEEAEEWGGGAGYGPGGGAYGGGGGNGGGAGYGHEGAGY------GGVVEM 216
            G  L   G       GGGAGYGPGG  YGGGGGNGGGAGYGHEGAGY      GG    
Sbjct: 189 VGYGLGGGGYGGGGGNGGGAGYGPGGSGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGY 248

Query: 217 AEEEDMVMKVQVEEMAVVMKVEDMAVVMNVVDMEAVEEMEVVMKVEDMEVVEEMAVVMKV 276
             E                  E                                      
Sbjct: 249 GHESGGYGGGGGSGGGAGYGHEGAG----------------------------------- 308

Query: 277 EDMEAVEEMVVVMKVEGTEGSGGNGG-GHESGGYGGSGGNGG----GHESGGYGGSGG 317
                           G  G+GG  G GHE  GYGG GGNGG    GHE  GYGG GG
Sbjct: 309 --------------YGGGGGNGGGAGYGHEGAGYGGGGGNGGGTGYGHEGAGYGGGGG 317

The following BLAST results are available for this feature:

BLAST of PI0025538.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025538.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH77	9.2e-28	49.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902220 PE=4 SV=1	[more]
A0A6J1DQA8	2.6e-14	54.27	glycine-rich cell wall structural protein 1.8 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1HUK9	1.9e-12	40.58	uncharacterized transmembrane protein DDB_G0289901-like isoform X28 OS=Cucurbita...	[more]
A0A6J1HS53	1.9e-12	40.58	fibroin heavy chain-like isoform X20 OS=Cucurbita maxima OX=3661 GN=LOC111466985...	[more]
A0A6J1HS72	1.9e-12	40.58	ice nucleation protein-like isoform X34 OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]

BLAST of PI0025538.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738893.1	1.8e-22	50.87	glycine-rich cell wall structural protein 1.8 isoform X2 [Cucumis sativus]	[more]
XP_031738894.1	4.6e-21	50.52	glycine-rich cell wall structural protein 1.8 isoform X3 [Cucumis sativus]	[more]
XP_031738892.1	4.6e-21	50.52	glycine-rich cell wall structural protein 1.8 isoform X1 [Cucumis sativus] >KAE8...	[more]
XP_031738895.1	1.3e-20	49.83	glycine-rich cell wall structural protein 1 isoform X4 [Cucumis sativus]	[more]
XP_038887344.1	1.9e-19	45.30	glycine-rich cell wall structural protein 1.8-like isoform X2 [Benincasa hispida...	[more]

BLAST of PI0025538.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0025538	PI0025538	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025538.1-exon	PI0025538.1-exon-chr04:32527596..32528238	exon
PI0025538.1-exon	PI0025538.1-exon-chr04:32528390..32528823	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025538.1-cds	PI0025538.1-cds-chr04:32527596..32528238	CDS
PI0025538.1-cds	PI0025538.1-cds-chr04:32528390..32528823	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0025538.1	PI0025538.1-protein	polypeptide