PI0025217.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0025217.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr07: 15905826 .. 15907595 (+)
Sequence length	522
RNA-Seq Expression	PI0025217.1
Synteny	PI0025217.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGATAAAAGGCCAAATACCCGCAGCCGTTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAATATCTGGGAAAAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAACACGGTTTGTCCTCTGAATGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGAATCCCTAAGAAATCACATTGAAAGTCGTGACGCTGCTGAATTAAGTCAGACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAACCACAAAATTTGACCTCAATTGCATCGTTGTTTGTTCAACAGTTGCAGGATATGATAGCAAACTCCATACGGACTCAATATGGTGGAACTGCTTAATCTGCTCAAACTTTCTCTTTGTATTCCAAGCCATATACGAAAAGGATCGACAATCTGAGAATGCCGATTGGCTACCAGCCACCCAAGTTCCAATAATTTGATGGAAAAGGCAATCCAAAGCAATATGTTGCTCACTTTATCGAAACATGTGAAACTTCCGGTACGCGAGGAGATTTGTTGGTCAGACAGTTCGTCCAAACTCTCAAGGGAAATGCCTTCGACTGGTACACCGATCTTGAGCCTGAAACCATTGATAGTTGGGAGCAGCTTGAGAGGGACTTTCTCAACCGCATCTACAGCACTCGGCGTATCGTTAGCATGATAGAGCTAACAGCCACCAAGCAGCGAAAGGGCGACTCGGTCATTAACTACATTAATCGCTGGAGAGCACTAAGCCTTGACTGCACAGACAGATTGACTGAACTGTCAGCAGTGGAAATGTGCACTCAAGGAATGCATTGGGGGCTCCTATACATCTTGCAGAGAATAAAACCCCACATCTTTGAAGAGTTAGCAACTAGAGCTCATGATATGGAGTTAAGTATTGCTAATAGAGGAAACAATGACCTGCTGATCCCGAAAGTGAGAAAGGAAAAGAAAGAAGTGAAGAGCACCCTGAAGGTATCGAAGGGTGCTACCAAAGAAGCTATGGTCGTTACTACAACCCCTTTAAAGTTTGTCCCTAAAGAGAAAAGGATTGAAAAACGCCAAGATGAAGGCGAAAAAAGACACCCAACATTGAAAGAGAGGTAAGAAAAAGTTTACCCTTTTCCAGACTCTGACTTACCTGATATGTTAGAGCAATTACTGGAAAAACAACTCATTCAACTTTCTGAATGTAAACGACCAGCAGAAATTGGGAAGGTAAATGATCCTAATTACTACAAATATCATTGAGTCATCAACCACCCTGTAGAGAAATGCTTCGTGTTGAAAGAGTTAATTTTGAAATTAGCTCTAGATAAAAAAATTGAACTAGATCTCGATGATGTGGCACAAACGAATCATGTTGCAGTAATGATTCATCTAGAGGGTCGATCACTTGCTATAGGTAGTCTAATCCAATTTGGATATTTAGAGCCTGTTGTTATATATTCTTCACTGGAGGTTTTACAAAATAATGACATCCAAATTGTTTGCTCAAAAGAAGACGAAAAACACGTGGAAGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCACAAATAA

mRNA sequence

ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGATAAAAGGCCAAATACCCGCAGCCGTTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAATATCTGGGAAAAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAACACGGTTTGTCCTCTGAATGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGAATCCCTAAGAAATCACATTGAAAGTCGTGACGCTGCTGAATTAAGTCAGACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAAAGACGAAAAACACGTGGAAGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCACAAATAA

Coding sequence (CDS)

ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGATAAAAGGCCAAATACCCGCAGCCGTTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAATATCTGGGAAAAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAACACGGTTTGTCCTCTGAATGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGAATCCCTAAGAAATCACATTGAAAGTCGTGACGCTGCTGAATTAAGTCAGACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAAAGACGAAAAACACGTGGAAGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCACAAATAA

Protein sequence

MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHVEDADEGWTLVTRRKKHK

Homology

[Close]

BLAST of PI0025217.1 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 9.9e-60
Identity = 125/155 (80.65%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWEK+SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEKISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0025217.1 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 124/156 (79.49%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV 157
           +NHIESRDAAE S  +T KN DKGKA++QE   +++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNL 156

[Close]

BLAST of PI0025217.1 vs. ExPASy TrEMBL
Match: A0A5A7T892 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001980 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 124/156 (79.49%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV 157
           +NHIESRDAAE S  +T KN DKGKA++QE   +++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNL 156

[Close]

BLAST of PI0025217.1 vs. ExPASy TrEMBL
Match: A0A5A7T1V3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00150 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 8.3e-59
Identity = 123/155 (79.35%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNI+SVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIISVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0025217.1 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMV NVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVANVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0025217.1 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-59
Identity = 125/155 (80.65%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWEK+SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEKISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0025217.1 vs. NCBI nr
Match: KAA0039098.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59
Identity = 124/156 (79.49%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV 157
           +NHIESRDAAE S  +T KN DKGKA++QE   +++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNL 156

[Close]

BLAST of PI0025217.1 vs. NCBI nr
Match: TYK14887.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59
Identity = 124/156 (79.49%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV 157
           +NHIESRDAAE S  +T KN DKGKA++QE   +++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNL 156

[Close]

BLAST of PI0025217.1 vs. NCBI nr
Match: KAA0037432.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58
Identity = 123/155 (79.35%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNI+SVMVTNVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIISVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0025217.1 vs. NCBI nr
Match: KAA0065303.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESH 60
           MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAVEERDYEIESL 120
            IDEH  SS+ SSEEMPHPNIMSVMV NVDTSE+RMAELEKKVNML+K VEERDYEI  L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVANVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH 156
           +NHIESRDAAE S  +T KN DKGKA++QE   ++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

The following BLAST results are available for this feature:

BLAST of PI0025217.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025217.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URH1	9.9e-60	80.65	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CSH0	1.7e-59	79.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T892	1.7e-59	79.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T1V3	8.3e-59	79.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VAV4	1.1e-58	79.35	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0025217.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056121.1	2.0e-59	80.65	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039098.1	3.5e-59	79.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14887.1	3.5e-59	79.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037432.1	1.7e-58	79.35	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065303.1	2.3e-58	79.35	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0025217.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0025217	PI0025217	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025217.1-exon	PI0025217.1-exon-chr07:15905826..15906276	exon
PI0025217.1-exon	PI0025217.1-exon-chr07:15907525..15907595	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025217.1-cds	PI0025217.1-cds-chr07:15905826..15906276	CDS
PI0025217.1-cds	PI0025217.1-cds-chr07:15907525..15907595	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0025217.1	PI0025217.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity