PI0024619.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0024619.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 27666601 .. 27667767 (-)
Sequence length	669
RNA-Seq Expression	PI0024619.1
Synteny	PI0024619.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAAACAACAATGGTTTGATAAAACTTAGAATTTGGTTTCTATGTGTAAGGCCCCAAGGTATTTTTTTTCCCTTTTGTTACTTTATTATTTAATCCCCCAACCACTCTTTAATTACAAAGCCAAGAAGGAAAAAGGAAAACAAAAAGGGGGTATTAGTAGTTATTATTTTTTTTATTTTTGGTATTAAATAAGACCTCGTGCAACGTGCAGACTCCTCACCTTCCCCATCTTCTTCTTCTTCCTCTTCACGCAAACCCTAGCCGCCGCCGCCAGTCACCGCGCCGCCCTGCTCCTTCCGATCGCGAACCGCCGCGAGCCGTCCGCGCCCAGCCGCGCGCCGCCCGTCCGCGTCCCACCGCCAGCCGCGCGATCGTCCACCGCGCTGCGCCGCTCGCCAGCCGCTCACCCTTCGCCTGCCGCCGATCAAATCGTATTGATCCTCTTCCTTGTGAACCATTTGAGCCTTTTGTGGCTACTCTGGTAAGTATCGATGGGTTCTTAGGATGCCCATCATCATGACTGCTTGGTTCTCCTTGTATAGTCTTGGTCTTAATGTTGGGTTTGTTGTGAAGGTCTTGGAGCCAAGCAGCGGAGAGAACTGCAATTCGCCTCCCACTCAAGGTCGTCGCTGTAGGGAGTGTTTTTCAGCCAGCCTTTCAGGTAAGAGGATTCTTCTGCTAGACCTCCCTCAACTCCAACTTTCCCTGGTAAATTCTGTGGTTGCTCGATAGGATAACGAACCTGCCATGCCTAACGCTTGTTGTATGTATATATATATGTTATGGTTCCTTGCTCTCTGTTACTGCTGATTGCTATTCATTATGCTTCCTGCATCGGTTTTTCCGCCATGGCCTAGTCACAGATTGTTTGTGCTACCTTATACTGTCATGCTAGGAATGTCGGTTGTCTTTACTGTTAGGGGTACTTACATGTGCGGTGTCCCTCGAGGTCACCCTTTCATCTTTACTGTTAGGACTGCAAGCGCCCAAAGGGCCTCAGTCTGTCATGCCATGATCAAGAGCGGCCCGACGGGGTCGTCCACAGCCCGATTTCCATGGGTGTCCCTACGGGGTCACGAGTTAAGTGTGTTCCATCGGGCACACAACGTTTCTGAGTACCTCCCCTTCGGGGGGCCTAACAGAGGATTAACCGTCAAGTAG

mRNA sequence

ATGATTGAAAACAACAATGGCCCCAAGACCTCGTGCAACGTGCAGACTCCTCACCTTCCCCATCTTCTTCTTCTTCCTCTTCACGCAAACCCTAGCCGCCGCCGCCAGTCACCGCGCCGCCCTGCTCCTTCCGATCGCGAACCGCCGCGAGCCGTCCGCGCCCAGCCGCGCGCCGCCCGTCCGCGTCCCACCGCCAGCCGCGCGATCGTCCACCGCGCTGCGCCGCTCGCCAGCCGCTCACCCTTCGCCTGCCGCCGATCAAATCGTATTGATCCTCTTCCTTGTGAACCATTTGAGCCTTTTGTGGCTACTCTGGTCTTGGAGCCAAGCAGCGGAGAGAACTGCAATTCGCCTCCCACTCAAGGTCGTCGCTGTAGGGAGTGTTTTTCAGCCAGCCTTTCAGGAATGTCGGTTGTCTTTACTGTTAGGGGTACTTACATGTGCGGTGTCCCTCGAGGTCACCCTTTCATCTTTACTGTTAGGACTGCAAGCGCCCAAAGGGCCTCAGTCTGTCATGCCATGATCAAGAGCGGCCCGACGGGGTCGTCCACAGCCCGATTTCCATGGGTGTCCCTACGGGGTCACGAGTTAAGTGTGTTCCATCGGGCACACAACGTTTCTGAGTACCTCCCCTTCGGGGGGCCTAACAGAGGATTAACCGTCAAGTAG

Coding sequence (CDS)

ATGATTGAAAACAACAATGGCCCCAAGACCTCGTGCAACGTGCAGACTCCTCACCTTCCCCATCTTCTTCTTCTTCCTCTTCACGCAAACCCTAGCCGCCGCCGCCAGTCACCGCGCCGCCCTGCTCCTTCCGATCGCGAACCGCCGCGAGCCGTCCGCGCCCAGCCGCGCGCCGCCCGTCCGCGTCCCACCGCCAGCCGCGCGATCGTCCACCGCGCTGCGCCGCTCGCCAGCCGCTCACCCTTCGCCTGCCGCCGATCAAATCGTATTGATCCTCTTCCTTGTGAACCATTTGAGCCTTTTGTGGCTACTCTGGTCTTGGAGCCAAGCAGCGGAGAGAACTGCAATTCGCCTCCCACTCAAGGTCGTCGCTGTAGGGAGTGTTTTTCAGCCAGCCTTTCAGGAATGTCGGTTGTCTTTACTGTTAGGGGTACTTACATGTGCGGTGTCCCTCGAGGTCACCCTTTCATCTTTACTGTTAGGACTGCAAGCGCCCAAAGGGCCTCAGTCTGTCATGCCATGATCAAGAGCGGCCCGACGGGGTCGTCCACAGCCCGATTTCCATGGGTGTCCCTACGGGGTCACGAGTTAAGTGTGTTCCATCGGGCACACAACGTTTCTGAGTACCTCCCCTTCGGGGGGCCTAACAGAGGATTAACCGTCAAGTAG

Protein sequence

MIENNNGPKTSCNVQTPHLPHLLLLPLHANPSRRRQSPRRPAPSDREPPRAVRAQPRAARPRPTASRAIVHRAAPLASRSPFACRRSNRIDPLPCEPFEPFVATLVLEPSSGENCNSPPTQGRRCRECFSASLSGMSVVFTVRGTYMCGVPRGHPFIFTVRTASAQRASVCHAMIKSGPTGSSTARFPWVSLRGHELSVFHRAHNVSEYLPFGGPNRGLTVK

Homology

The following BLAST results are available for this feature:

BLAST of PI0024619.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024619.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024619.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024619.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0024619	PI0024619	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024619.1-exon	PI0024619.1-exon-chr06:27666601..27666866	exon
PI0024619.1-exon	PI0024619.1-exon-chr06:27667101..27667188	exon
PI0024619.1-exon	PI0024619.1-exon-chr06:27667281..27667568	exon
PI0024619.1-exon	PI0024619.1-exon-chr06:27667704..27667711	exon
PI0024619.1-exon	PI0024619.1-exon-chr06:27667749..27667767	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024619.1-cds	PI0024619.1-cds-chr06:27666601..27666866	CDS
PI0024619.1-cds	PI0024619.1-cds-chr06:27667101..27667188	CDS
PI0024619.1-cds	PI0024619.1-cds-chr06:27667281..27667568	CDS
PI0024619.1-cds	PI0024619.1-cds-chr06:27667704..27667711	CDS
PI0024619.1-cds	PI0024619.1-cds-chr06:27667749..27667767	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0024619.1	PI0024619.1-protein	polypeptide