PI0022428.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0022428.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Location	chr06: 23715959 .. 23716276 (-)
Sequence length	318
RNA-Seq Expression	PI0022428.1
Synteny	PI0022428.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCGTGAAAGAAGTTTGGGATGCACTGCAAAAGAAGTATGACGTCGAAGAAGTTGGATCCAAGAAATATGCGATGAGTCGATTCTTACAGTACCAGATGACTGATGACAGATCAGTGGAGGCCCAATCACACGAGTTGCAAAAAATTGCTCACGAAATAAGCAATGAAGGTATGCCACTTAATGAGCAGTTTCAAGTTGCTGTTATTATTGACAAATTACCTTCACTATGGAAGAACTTTAAGAATACTCTAAGGCATAAGAGAAAACAGTTCTCCCTGGAGAGTCTGATCACTCGATTGAGAATTGAGTAG

mRNA sequence

ATGTCCACCGTGAAAGAAGTTTGGGATGCACTGCAAAAGAAGTATGACGTCGAAGAAGTTGGATCCAAGAAATATGCGATGAGTCGATTCTTACAGTACCAGATGACTGATGACAGATCAGTGGAGGCCCAATCACACGAGTTGCAAAAAATTGCTCACGAAATAAGCAATGAAGGTATGCCACTTAATGAGCAGTTTCAAGTTGCTGTTATTATTGACAAATTACCTTCACTATGGAAGAACTTTAAGAATACTCTAAGGCATAAGAGAAAACAGTTCTCCCTGGAGAGTCTGATCACTCGATTGAGAATTGAGTAG

Coding sequence (CDS)

ATGTCCACCGTGAAAGAAGTTTGGGATGCACTGCAAAAGAAGTATGACGTCGAAGAAGTTGGATCCAAGAAATATGCGATGAGTCGATTCTTACAGTACCAGATGACTGATGACAGATCAGTGGAGGCCCAATCACACGAGTTGCAAAAAATTGCTCACGAAATAAGCAATGAAGGTATGCCACTTAATGAGCAGTTTCAAGTTGCTGTTATTATTGACAAATTACCTTCACTATGGAAGAACTTTAAGAATACTCTAAGGCATAAGAGAAAACAGTTCTCCCTGGAGAGTCTGATCACTCGATTGAGAATTGAGTAG

Protein sequence

MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGMPLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE

Homology

[Close]

BLAST of PI0022428.1 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDALQKKYD EE GSKKYA+SR+L+YQMTDD+SVEAQSHE+QKIAHEI +EGM
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV VIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 198

[Close]

BLAST of PI0022428.1 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 84/105 (80.00%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T K+VW+ALQKKYD EE GSKKYA+SR+L+YQMTDDRSVEAQSHE+QKIAHEI NEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV +IIDKLP LWK+FKNTLRHK K+FSLE+LITRL+IE
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIE 194

[Close]

BLAST of PI0022428.1 vs. ExPASy TrEMBL
Match: A0A5A7SXC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00540 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDALQKKYD+EEVGSKKY +SR+L+YQMTDD+SVEAQSHE+QKIAHEI +EGM
Sbjct: 30  MTTAKEVWDALQKKYDIEEVGSKKYNVSRYLKYQMTDDKSVEAQSHEIQKIAHEIISEGM 89

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV VIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 90  PLDDQFQV-VIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 133

[Close]

BLAST of PI0022428.1 vs. ExPASy TrEMBL
Match: A0A5D3DC59 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00340 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 84/105 (80.00%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDALQKKYD +E  SKKYA+SR+L+YQMTDD+SVE QSHE+QKIAHEI +EGM
Sbjct: 94  MTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQMTDDKSVETQSHEIQKIAHEIISEGM 153

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQVAVIIDKLP LWK+FKNTLRHK K+FSLESLITRL+IE
Sbjct: 154 PLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSLESLITRLKIE 198

[Close]

BLAST of PI0022428.1 vs. ExPASy TrEMBL
Match: A0A5D3BV12 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00700 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDA QKKYD EE GSKKYA++ +L+YQ+T+DRSVEAQSHE+QKIAHEI +EGM
Sbjct: 94  MTTAKEVWDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGM 153

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQVAVIIDKLPSLWK+FKNTLRHK K FSLESLITRLRIE
Sbjct: 154 PLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIE 198

[Close]

BLAST of PI0022428.1 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDALQKKYD EE GSKKYA+SR+L+YQMTDD+SVEAQSHE+QKIAHEI +EGM
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV VIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 198

[Close]

BLAST of PI0022428.1 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 84/105 (80.00%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T K+VW+ALQKKYD EE GSKKYA+SR+L+YQMTDDRSVEAQSHE+QKIAHEI NEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV +IIDKLP LWK+FKNTLRHK K+FSLE+LITRL+IE
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIE 194

[Close]

BLAST of PI0022428.1 vs. NCBI nr
Match: KAA0035842.1 (uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30290.1 uncharacterized protein E5676_scaffold344G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 6.4e-40
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
           M+T KEVWDALQKKYD+EEVGSKKY +SR+L+YQMTDD+SVEAQSHE+QKIAHEI +EGM
Sbjct: 30  MTTAKEVWDALQKKYDIEEVGSKKYNVSRYLKYQMTDDKSVEAQSHEIQKIAHEIISEGM 89

Query: 61  PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
           PL++QFQV VIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 90  PLDDQFQV-VIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 133

[Close]

BLAST of PI0022428.1 vs. NCBI nr
Match: XP_038883503.1 (uncharacterized protein LOC120074448 isoform X4 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1    MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
            M T KEVWDALQKKYD EE  SKKYA+S +L++QMTD++SVEAQSHELQKIAHEI  EGM
Sbjct: 1039 MKTAKEVWDALQKKYDTEEARSKKYAVSHYLKFQMTDEKSVEAQSHELQKIAHEIITEGM 1098

Query: 61   PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
            PL+EQFQ+AVIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 1099 PLDEQFQIAVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 1143

[Close]

BLAST of PI0022428.1 vs. NCBI nr
Match: XP_038883500.1 (uncharacterized protein LOC120074448 isoform X1 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1    MSTVKEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGM 60
            M T KEVWDALQKKYD EE  SKKYA+S +L++QMTD++SVEAQSHELQKIAHEI  EGM
Sbjct: 1195 MKTAKEVWDALQKKYDTEEARSKKYAVSHYLKFQMTDEKSVEAQSHELQKIAHEIITEGM 1254

Query: 61   PLNEQFQVAVIIDKLPSLWKNFKNTLRHKRKQFSLESLITRLRIE 106
            PL+EQFQ+AVIIDKLP LWK+FKNTLRHK K+FSLESLITRLRIE
Sbjct: 1255 PLDEQFQIAVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIE 1299

[Close]

BLAST of PI0022428.1 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 5   KEVWDALQKKYDVEEVGSKKYAMSRFLQYQMTDDRSVEAQSHELQKIAHEISNEGMPLNE 64
           KE+WD L+  Y  +E  SK+  + ++++++M ++R +  Q     KIA  I + GM L+E
Sbjct: 284 KELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDE 343

Query: 65  QFQVAVIIDKLPSLWKNF 83
            F V+ II K P  W+ F
Sbjct: 344 AFHVSTIISKFPPSWRGF 361

The following BLAST results are available for this feature:

BLAST of PI0022428.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022428.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYY4	1.6e-41	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDS3	1.1e-40	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXC2	3.1e-40	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DC59	1.5e-39	80.00	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BV12	1.5e-39	80.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0022428.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060458.1	3.4e-41	82.86	uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1...	[more]
TYJ98000.1	2.2e-40	80.00	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]
KAA0035842.1	6.4e-40	82.86	uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30...	[more]
XP_038883503.1	1.9e-39	80.95	uncharacterized protein LOC120074448 isoform X4 [Benincasa hispida]	[more]
XP_038883500.1	1.9e-39	80.95	uncharacterized protein LOC120074448 isoform X1 [Benincasa hispida]	[more]

BLAST of PI0022428.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	3.6e-09	35.90	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..104 e-value: 2.1E-19 score: 69.7
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..105
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 3..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0022428	PI0022428	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022428.1-exon	PI0022428.1-exon-chr06:23715959..23716276	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022428.1-cds	PI0022428.1-cds-chr06:23715959..23716276	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0022428.1	PI0022428.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding