PI0021480.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0021480.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	chr01: 3031318 .. 3031829 (-)
Sequence length	512
RNA-Seq Expression	PI0021480.1
Synteny	PI0021480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACACCTAAAACCCCAAATCCCCCCTCTTCAAACTTCATCCTCAAAACCCAAACAAATTCCCAAAATCCCTCTCAAATTCAAAAACTTCTTTAAATTAAATAAAAAGCTTCTTCATTTCCAAATCCCATGGCCAAAATTTGCCTTCTTTTTTGCCTCGTTGTGGCCCAGATCTTGCTAATTCAAGCAATGACTTCCATTGCTACAACAACAGATCTCCCTCTGTCGGCGGCGCCGGAGCCATCAGAGAAGGGGACCAGAGAAGGATCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGCTGGGAAAGCACCATGGGGATAAGTCGGTGGCTGGCGGGGGAGTCATCATCGGTGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGCTTGATTCGGTTCATTGAGACTGATCCTAATTTCTAGTCTTTTTTTTTTTTTTTTCTTACACAAATCTTATATATAAATATATTCTTTTGATT

mRNA sequence

TAACACCTAAAACCCCAAATCCCCCCTCTTCAAACTTCATCCTCAAAACCCAAACAAATTCCCAAAATCCCTCTCAAATTCAAAAACTTCTTTAAATTAAATAAAAAGCTTCTTCATTTCCAAATCCCATGGCCAAAATTTGCCTTCTTTTTTGCCTCGTTGTGGCCCAGATCTTGCTAATTCAAGCAATGACTTCCATTGCTACAACAACAGATCTCCCTCTGTCGGCGGCGCCGGAGCCATCAGAGAAGGGGACCAGAGAAGGATCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGCTGGGAAAGCACCATGGGGATAAGTCGGTGGCTGGCGGGGGAGTCATCATCGGTGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGCTTGATTCGGTTCATTGAGACTGATCCTAATTTCTAGTCTTTTTTTTTTTTTTTTCTTACACAAATCTTATATATAAATATATTCTTTTGATT

Coding sequence (CDS)

ATGGCCAAAATTTGCCTTCTTTTTTGCCTCGTTGTGGCCCAGATCTTGCTAATTCAAGCAATGACTTCCATTGCTACAACAACAGATCTCCCTCTGTCGGCGGCGCCGGAGCCATCAGAGAAGGGGACCAGAGAAGGATCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGCTGGGAAAGCACCATGGGGATAAGTCGGTGGCTGGCGGGGGAGTCATCATCGGTGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGCTTGATTCGGTTCATTGA

Protein sequence

MAKICLLFCLVVAQILLIQAMTSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH

Homology

[Close]

BLAST of PI0021480.1 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 96/102 (94.12%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MAKICLLFCLVVAQILLIQAMTSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLGK 60
           MAK CLLFCL+VA+ILLIQAMTSIATTTDLPLSAAPEP+EKGTREGS+VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH 103
           HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDG+DSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of PI0021480.1 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-40
Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MAKICLLFCLVVAQILLIQAM-TSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLG 60
           MAKICLLFCL+V +I LIQA+ TSIATTT+LPLS APE SEKGTREGSEVAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH 103
           KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKRDG+DSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of PI0021480.1 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 7   LFCLVVAQILLIQAMTS-----------------------IATTTDLPLSAAPEPSEKGT 66
           LFCL++A+IL++QAM                         +A   D P+S+  E  E  +
Sbjct: 6   LFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAESPE--S 65

Query: 67  REGSEVAEAPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGL 99
           +E S+VAEAP IRR+GKHH DKS+AGGGVIIGGL TAIFA VFCYIRVTRKRDG+
Sbjct: 66  KEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of PI0021480.1 vs. ExPASy TrEMBL
Match: A0A7N2R9A0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.4e-18
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 7   LFC--LVVAQILLIQAMTS-----------------------IATTTDLPLSAAPEPSEK 66
           LFC  +++A+IL++QAM                         +A   D P+S+    S +
Sbjct: 6   LFCFMVILAEILVVQAMAGKSEGSEPNPFGLKAQNKVGTLRVVARLADQPVSSV-AGSPE 65

Query: 67  GTREGSEVAEAPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKR 96
           G +E S VAEAPEIRRLGKHH DKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKR
Sbjct: 66  GNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKR 118

[Close]

BLAST of PI0021480.1 vs. ExPASy TrEMBL
Match: A0A2R6QCD3 (Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19050 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 62/101 (61.39%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 6   LLFCLVVAQILLIQAMT---------SIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIR 65
           LL CLV+A ILL+QAM             T  D P S     S      GS VAEAPEI 
Sbjct: 5   LLTCLVLAHILLVQAMAIRSDPRKILESHTIADPPASTGSVESASDGETGSSVAEAPEIG 64

Query: 66  RLGKHH-GDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD 97
           RLGKHH  DKSVAGGGVIIGGL TAIFAAV+CYIRVTR+RD
Sbjct: 65  RLGKHHSSDKSVAGGGVIIGGLATAIFAAVYCYIRVTRRRD 105

[Close]

BLAST of PI0021480.1 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 96/102 (94.12%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MAKICLLFCLVVAQILLIQAMTSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLGK 60
           MAK CLLFCL+VA+ILLIQAMTSIATTTDLPLSAAPEP+EKGTREGS+VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH 103
           HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDG+DSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of PI0021480.1 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-32
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAKICLLFCLVVAQILLIQAM-TSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLG 60
          MAKICLLFCL+V +I LIQA+ TSIATTT+LPLS APE SEKGTREGSEVAEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIR 91
          KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of PI0021480.1 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-31
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MAKICLLFCLVVAQILLIQAMTSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLGK 60
           MAKI LL CL++AQILLIQAM S ATTT   +SAAPEPSE    EG  +AEAPEIRRLGK
Sbjct: 1   MAKISLL-CLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH 103
           HH DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDG+DSVH
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of PI0021480.1 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MAKICLLFCLVVAQILLIQAMTSIATTTDLPLSAAPEPSEKGTREGSEVAEAPEIRRLGK 60
           MAKI LL  L++AQILLIQAM S ATTT   +SAAPEPSE    EG  +AEAPEIRRLGK
Sbjct: 1   MAKISLL-SLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGLDSVH 103
           HH DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDG+DSVH
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of PI0021480.1 vs. NCBI nr
Match: KAF3964431.1 (hypothetical protein CMV_011281 [Castanea mollissima])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 64/115 (55.65%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 7   LFC--LVVAQILLIQAMTS-----------------------IATTTDLPLSAAPEPSEK 66
           LFC  +++A+IL++QAM                         +A   D P+S+  E S +
Sbjct: 75  LFCFMVILAEILVVQAMAGKSEGSELNPFGLKAQHKVGTLRVVARLADQPVSSVAE-SPE 134

Query: 67  GTREGSEVAEAPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD 97
           G +E S VAEAP IRRLGKHH DKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD
Sbjct: 135 GNKENSNVAEAPVIRRLGKHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD 188

[Close]

BLAST of PI0021480.1 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 15 ILLIQAMTSIATTTDLPLSAAPEPSEK-GTRE-GSEVAEAPEIRRL------GKHHG--D 74
          I+L   +T + +       A P  + K G  E   E AEAPE+  L      G HH   +
Sbjct: 6  IVLCFLLTYVFSMAAASSEAEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHHSTVE 65

Query: 75 KSVAGGGVIIGGLVTAIFAAVFCYIRVTRK 95
          +SVAGGGVI+GGL T     VFCYIR TRK
Sbjct: 66 RSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of PI0021480.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021480.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	1.0e-43	94.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	6.7e-40	88.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2N9IXN3	3.8e-19	53.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
A0A7N2R9A0	9.4e-18	55.26	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2R6QCD3	2.7e-17	61.39	Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinen...	[more]

BLAST of PI0021480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031619.1	2.1e-43	94.12	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAE8645753.1	2.8e-32	87.91	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAG6572323.1	1.8e-31	80.39	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	2.6e-30	79.41	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF3964431.1	1.8e-18	55.65	hypothetical protein CMV_011281 [Castanea mollissima]	[more]

BLAST of PI0021480.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	1.5e-07	43.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..62
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0021480	PI0021480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021480.1-exon	PI0021480.1-exon-chr01:3031318..3031829	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021480.1-three_prime_utr	PI0021480.1-three_prime_utr-chr01:3031318..3031392	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021480.1-cds	PI0021480.1-cds-chr01:3031393..3031701	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021480.1-five_prime_utr	PI0021480.1-five_prime_utr-chr01:3031702..3031829	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0021480.1	PI0021480.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane