PI0020169.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0020169.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein RADIALIS-like 1
Location	chr01: 6135089 .. 6137254 (-)
Sequence length	249
RNA-Seq Expression	PI0020169.1
Synteny	PI0020169.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAATGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAACCTCCGAGTTAATTGGTGATTTGATACATGATATTAGAGTAATACGGTTCTGTTTGTAAGTGAAATGAGAGTGTTAACGTATAGCTAAATTTAGTATAGCTTAAGAAATTTTAGGTTTGATTAGTTGTTTAACAAATGACTTGATCATCGATGACAACATTAAACAATGTATACAACAAAAAAGATTAATGGTGGCAATATGTATTAGACAACTGAGTTTATTTCATCTGAAAATTAAACTATTATTAGACATTATTAGAGGTATAGCTCATATATCTTCTAAAATCGCGAGGTTTCTCCATCTTTGTAACTGGAGATTTTATTCACTCTCAAGATTGTGCCTCTTTGAGTTCCCCTATATTCTTGTATTGGAATCTAATTTTTGTTTTGCACATAATATTCGTTTGGATTTTATAGGCTTTGATACTTTATTCATATAAACACGAGGTTCTGCCTTAAAACCAATTGTTATGAGAGAGAAGTAACTCGTGTATCTTATATTATTCCCTTTCTTTAAAATGATACCGTATACAATATTCTCTCTAGATAATATTAAGTCTTTTTAAATTCACCATTGTTGAGCTGATCTAAATACAACACTCCTTTCGAACCTTTATGTTTATATGCTAATATGTAGTTAGGAAAAATTTTTCCTATATTTCCATGAATAAAGAAAATCAAGTTTTCATATATTGATACATTTTATGGTAGAAGTTTCTATAACACATCATCTTATCCTTAGAACTCACAATCACTTTTTGATAAATAACTTTTTATTTTATTTAGAGAGGACACAATATCTGAAAAGAAAACATTGGATTTCGACGTAGTATTACAGTATAAGGTCATCTCATATTTAACGAAATAATTGATTCGAAACGTATATTTTTGTCTCTAAGTAGTCATGTTTTCAACTGATCTAGTCGAATTCAAACAAGGTGTCCTAATTATTTTTCATTGAATGATCTCTTAGCTCTCTTGCAAAAGTTTATGTCCTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTGGCCACACCCCCCCCCCCCCCCCCCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAATACAATATAATAACTCTTGATCTTGTAAGCTTTTTGAAAGGCCCCTTTCTCTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACAACATTTATATATATTAGGAATAATAATAATAATAATAATAATATATCATTTATAGAAATTAACATGTTGTTGTTGTTATTGTTATTATTAGGTTCTTAACTTTTTTGTTTTTATCCTTAGGATGAGGAACATGAAGTTCCACCATTGAGGTTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAACCTTTTGCTCTAATTTATATATAAAATGATATATTTCTTGTGTTTTGTTTTTTTAACGATATCTAATATTATTGATTTGTGTTAAGCTCTTAAGTTATTGCTTAATTCCATGTATTATTGTACATCAACCTTTGATTTTGGAAGGATCAAAAGATTCAAATGAATTATTCCCTCCTTTTTCATGAGGTTAATTAATGAGTATTTATGTTTTTTTGGATAAGGAAATCTACTCATGATATATATGGTTCAAATTCTTTCCCATGTCTCAATGATTATTTAAGTTTTTTATTTGTTTGTTAGTTCACATCTTGATTGGATGTAAGTTAAAAAAATATATATATATGTAGCAAATGTACGTAATATGCGTACACTTTTGTGCTCTCGTAGATATTTTAGTTTAACTAACAAGTGTGGAGATTCAAACTTCTGATATAAATAAAATTTGACGAATGTAAGTTTAA

mRNA sequence

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAATGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGTTTAA

Coding sequence (CDS)

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAATGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGTTTAA

Protein sequence

MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQV

Homology

[Close]

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGG 79
            IE+G VPFP YRTSGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.0e-25
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 5  SSHGSG-TWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGG 79
          IESG+VPFP YRT+GG
Sbjct: 63 IESGKVPFPNYRTTGG 78

[Close]

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-23
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          V  IESG+ P P   S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-22
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of PI0020169.1 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.9e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of PI0020169.1 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of PI0020169.1 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of PI0020169.1 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-34
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGGGNQ 82
          DVKFIESGQVPFPYRTSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of PI0020169.1 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          VKFIESGQV FPYRTSGGG+
Sbjct: 61 VKFIESGQVSFPYRTSGGGS 80

[Close]

BLAST of PI0020169.1 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of PI0020169.1 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of PI0020169.1 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of PI0020169.1 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of PI0020169.1 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSG+WT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          VKFIESGQVPFPYR+S GGN
Sbjct: 61 VKFIESGQVPFPYRSSRGGN 80

[Close]

BLAST of PI0020169.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGG 79
            IE+G VPFP YRTSGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of PI0020169.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of PI0020169.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of PI0020169.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of PI0020169.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

The following BLAST results are available for this feature:

BLAST of PI0020169.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	2.3e-27	74.36	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.5e-26	72.15	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	8.0e-25	69.74	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	9.8e-23	63.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	4.9e-22	68.42	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of PI0020169.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348	2.9e-38	98.77	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A5A7SYK4	1.9e-37	97.53	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	1.9e-37	97.53	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A6J1GJE9	7.5e-34	91.46	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]
A0A6J1C385	2.2e-33	90.00	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]

BLAST of PI0020169.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151125.2	6.1e-38	98.77	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAE8645641.1	6.1e-38	98.77	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
KAA0036150.1	3.9e-37	97.53	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	3.9e-37	97.53	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_038888369.1	2.4e-34	92.50	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of PI0020169.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	1.6e-28	74.36	RAD-like 1	[more]
AT2G21650.1	1.0e-27	72.15	Homeodomain-like superfamily protein	[more]
AT1G75250.1	3.5e-23	68.42	RAD-like 6	[more]
AT1G75250.2	3.5e-23	68.42	RAD-like 6	[more]
AT1G19510.1	1.0e-22	63.41	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 3.9E-7 score: 39.7
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 2.28349E-7 score: 41.0218
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 1.4E-22 score: 81.2
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0020169	PI0020169	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020169.1-exon	PI0020169.1-exon-chr01:6135089..6135093	exon
PI0020169.1-exon	PI0020169.1-exon-chr01:6137011..6137254	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020169.1-cds	PI0020169.1-cds-chr01:6135089..6135093	CDS
PI0020169.1-cds	PI0020169.1-cds-chr01:6137011..6137254	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0020169.1	PI0020169.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding