PI0020147.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0020147.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	chr08: 15973713 .. 15973925 (-)
Sequence length	213
RNA-Seq Expression	PI0020147.1
Synteny	PI0020147.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGACCGATAAGAACGGTGACGAATGTCTAACTCCAAAGAGCTGCGCATGTAGAATTCCGACGGTTTCCAAATGCCCTCCACCGCCGAAGAAGAAAGCAGTTACCGGCCGGAAGCTGGCCCCTCCGACAAGCGGTTATTTCCAGCCTCCCGATCTCGATGCTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGCTTAG

mRNA sequence

ATGGACAAGACCGATAAGAACGGTGACGAATGTCTAACTCCAAAGAGCTGCGCATGTAGAATTCCGACGGTTTCCAAATGCCCTCCACCGCCGAAGAAGAAAGCAGTTACCGGCCGGAAGCTGGCCCCTCCGACAAGCGGTTATTTCCAGCCTCCCGATCTCGATGCTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGCTTAG

Coding sequence (CDS)

ATGGACAAGACCGATAAGAACGGTGACGAATGTCTAACTCCAAAGAGCTGCGCATGTAGAATTCCGACGGTTTCCAAATGCCCTCCACCGCCGAAGAAGAAAGCAGTTACCGGCCGGAAGCTGGCCCCTCCGACAAGCGGTTATTTCCAGCCTCCCGATCTCGATGCTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGCTTAG

Protein sequence

MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMPPSSRWEACA

Homology

[Close]

BLAST of PI0020147.1 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-12
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 3  KTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMPP 62
          KT+   + C TP+S   RIP  S CPPPP+KK +  RK  PP +GYFQPPDL+ LF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

Query: 63 SSRWEACA 71
            R EACA
Sbjct: 67 --RREACA 72

[Close]

BLAST of PI0020147.1 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-07
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 11 CLTPKSCACRIPTVSKCPPPPKKKAVT---GRKLAPPTSGYFQPPDLDALFSMPPSSR 66
          C TP    CRIP    CPPP ++K      G+K  PP  GYFQPPDLD  FS+  +S+
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQ 79

[Close]

BLAST of PI0020147.1 vs. ExPASy TrEMBL
Match: A0A5A7SNA9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00480 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM 60
          M+KTDKNGDECLTPKS ACRIPT SKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFS+
Sbjct: 6  MEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSI 65

Query: 61 PPSSRWEACA 71
          PPSSRWEACA
Sbjct: 66 PPSSRWEACA 75

[Close]

BLAST of PI0020147.1 vs. ExPASy TrEMBL
Match: A0A0A0KXI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM 60
          M+KTDKNGDECLTPKSCACRIP V KCPPPPKKK+ TGRKLAPPT GYFQPPDLD LFSM
Sbjct: 6  MEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSM 65

Query: 61 PPSSRWEAC 70
          PPSSRWEAC
Sbjct: 66 PPSSRWEAC 74

[Close]

BLAST of PI0020147.1 vs. ExPASy TrEMBL
Match: B9SZZ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 8  GDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMPPSSRW 67
          G+EC TP+S  CRIP V  CPPPP+KK+ TG K  PP +GYFQPPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]

BLAST of PI0020147.1 vs. ExPASy TrEMBL
Match: A0A803QBN7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 2   DKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMP 61
           D     G++C TPK   CRIP    CPPPPKKK+++G K  PP +GYF PPDLD+LF +P
Sbjct: 114 DTNTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDSLFVIP 173

Query: 62  PSSRWEACA 71
             SR +ACA
Sbjct: 174 --SRGQACA 180

[Close]

BLAST of PI0020147.1 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 9   DECLTPKSCACRIPTVSKCPPPPKKK-AVTGRKLAPPTSGYFQPPDLDALFSMPPSSRWE 68
           +EC TP    CRIP V  CPPPPKKK A  G+K  PP  GYFQPPDL+ALFS+PP  R E
Sbjct: 98  EECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDLEALFSIPP--RRE 157

Query: 69  ACA 71
           ACA
Sbjct: 158 ACA 158

[Close]

BLAST of PI0020147.1 vs. NCBI nr
Match: KAA0032664.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23544.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 8.0e-31
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM 60
          M+KTDKNGDECLTPKS ACRIPT SKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFS+
Sbjct: 6  MEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSI 65

Query: 61 PPSSRWEACA 71
          PPSSRWEACA
Sbjct: 66 PPSSRWEACA 75

[Close]

BLAST of PI0020147.1 vs. NCBI nr
Match: KGN54563.2 (hypothetical protein Csa_017876 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM 60
          M+KTDKNGDECLTPKSCACRIP V KCPPPPKKK+ TGRKLAPPT GYFQPPDLD LFSM
Sbjct: 6  MEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSM 65

Query: 61 PPSSRWEA 69
          PPSSRWEA
Sbjct: 66 PPSSRWEA 73

[Close]

BLAST of PI0020147.1 vs. NCBI nr
Match: KAG6603646.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033830.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDKTD----KNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDA 60
          M+KTD     NG+ECLTP++CA RIP  SKCPPPPKKKAVTGRK  PPTSGYF PPDLDA
Sbjct: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60

Query: 61 LFSMPPSSRWEAC 70
          LFSMPPSSRWEAC
Sbjct: 61 LFSMPPSSRWEAC 73

[Close]

BLAST of PI0020147.1 vs. NCBI nr
Match: KAF3449173.1 (hypothetical protein FNV43_RR09901 [Rhamnella rubrinervis])

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 44/70 (62.86%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1  MDKTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM 60
          MD+   + DEC TPK   CRIP +  CPPPPKKK V G K  PP  GYFQPPDLDALF M
Sbjct: 1  MDREVISDDECTTPKRRECRIPVMFVCPPPPKKKTVCGTKRDPPKDGYFQPPDLDALFVM 60

Query: 61 PPSSRWEACA 71
          PP  R +ACA
Sbjct: 61 PP--RRQACA 68

[Close]

BLAST of PI0020147.1 vs. NCBI nr
Match: KAG7012399.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 9  DECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMPPSSRWEA 68
          +EC+TP++ A RIP  SKCPP  ++KAV   K   PTSGYF PPDLDALFSMPPSSRWEA
Sbjct: 9  NECVTPRNGAFRIPAASKCPPTAEEKAVHWPKQPLPTSGYFHPPDLDALFSMPPSSRWEA 68

[Close]

BLAST of PI0020147.1 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 3  KTDKNGDECLTPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMPP 62
          KT+   + C TP+S   RIP  S CPPPP+KK +  RK  PP +GYFQPPDL+ LF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

Query: 63 SSRWEACA 71
            R EACA
Sbjct: 67 --RREACA 72

[Close]

BLAST of PI0020147.1 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 6.8e-04
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 13  TPKSCACRIPTVSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALF 59
           TP + + RIPTV  CPP PKK+ +T  K++     +F PPDL+ +F
Sbjct: 57  TPTADSVRIPTVIPCPPAPKKRKLT-LKVSYGPREFFSPPDLETVF 101

The following BLAST results are available for this feature:

BLAST of PI0020147.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	1.7e-12	54.41	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	1.7e-07	48.28	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of PI0020147.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNA9	3.9e-31	94.29	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KXI9	1.3e-29	89.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1	[more]
B9SZZ7	1.6e-13	62.71	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1	[more]
A0A803QBN7	1.8e-12	55.07	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A0A0LAJ2	2.4e-12	65.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]

BLAST of PI0020147.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032664.1	8.0e-31	94.29	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23...	[more]
KGN54563.2	2.9e-28	89.71	hypothetical protein Csa_017876 [Cucumis sativus]	[more]
KAG6603646.1	8.6e-25	79.45	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAF3449173.1	4.0e-14	62.86	hypothetical protein FNV43_RR09901 [Rhamnella rubrinervis]	[more]
KAG7012399.1	2.6e-13	68.33	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]

BLAST of PI0020147.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	1.2e-13	54.41	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	6.8e-04	45.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53
None	No IPR available	PANTHER	PTHR33142:SF53	SUBFAMILY NOT NAMED	coord: 1..64
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0020147	PI0020147	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020147.1-exon	PI0020147.1-exon-chr08:15973713..15973925	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020147.1-cds	PI0020147.1-cds-chr08:15973713..15973925	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0020147.1	PI0020147.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0072380	TRC complex
molecular_function	GO:0060090	molecular adaptor activity