PI0018087.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0018087.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposase
Location	chr06: 18740626 .. 18741144 (-)
Sequence length	519
RNA-Seq Expression	PI0018087.1
Synteny	PI0018087.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACAGATCCATCGTCCCTTAAAATACTCTCTTGTAATGATGTTTTAACTCAAGCATTGGGTACGAAAGAGCATCATGGTCGTGTACGTGGGGTCGGCGGGTATGTTACTCCTATGACTTACTTTCATTTAGTGAAAAAAATATTGAAACGTGAGAAGAAAATTCTACTTGAGAATGAAGAACATCGGAAGCGCGTTAGCGAATTGGAAGCACGCATTCACAATAATTTATCTATCCCATTATCCAGACAAGGAAGTTGTTCGAAGGTGAGTTTGTTGGAGAAGATTGAGTCGAAAAAGATAATCAAAGAGAAGAGTAAGTTGAAGGAGAATGTGAAACTGAAAGAGAAGATGAAGGAGAAGAAGAATGAACCTAAAGGGAAACAAAAAGAGACCAAGCTAGAAGTGATCAACGTAACCGACAATGAAGTAGATTTGGACATCTTCAAGGTAAGTGATCCACCTACACTACAACAAATATTAGTTACGATAGCATACAAAAACCGCTATTGTTGA

mRNA sequence

ATGAATACAGATCCATCGTCCCTTAAAATACTCTCTTGTAATGATGTTTTAACTCAAGCATTGGGTACGAAAGAGCATCATGGTCGTGTACGTGGGGTCGGCGGGTATGTTACTCCTATGACTTACTTTCATTTAGTGAAAAAAATATTGAAACGTGAGAAGAAAATTCTACTTGAGAATGAAGAACATCGGAAGCGCGTTAGCGAATTGGAAGCACGCATTCACAATAATTTATCTATCCCATTATCCAGACAAGGAAGTTGTTCGAAGGTGAGTTTGTTGGAGAAGATTGAGTCGAAAAAGATAATCAAAGAGAAGAGTAAGTTGAAGGAGAATGTGAAACTGAAAGAGAAGATGAAGGAGAAGAAGAATGAACCTAAAGGGAAACAAAAAGAGACCAAGCTAGAAGTGATCAACGTAACCGACAATGAAGTAGATTTGGACATCTTCAAGGTAAGTGATCCACCTACACTACAACAAATATTAGTTACGATAGCATACAAAAACCGCTATTGTTGA

Coding sequence (CDS)

ATGAATACAGATCCATCGTCCCTTAAAATACTCTCTTGTAATGATGTTTTAACTCAAGCATTGGGTACGAAAGAGCATCATGGTCGTGTACGTGGGGTCGGCGGGTATGTTACTCCTATGACTTACTTTCATTTAGTGAAAAAAATATTGAAACGTGAGAAGAAAATTCTACTTGAGAATGAAGAACATCGGAAGCGCGTTAGCGAATTGGAAGCACGCATTCACAATAATTTATCTATCCCATTATCCAGACAAGGAAGTTGTTCGAAGGTGAGTTTGTTGGAGAAGATTGAGTCGAAAAAGATAATCAAAGAGAAGAGTAAGTTGAAGGAGAATGTGAAACTGAAAGAGAAGATGAAGGAGAAGAAGAATGAACCTAAAGGGAAACAAAAAGAGACCAAGCTAGAAGTGATCAACGTAACCGACAATGAAGTAGATTTGGACATCTTCAAGGTAAGTGATCCACCTACACTACAACAAATATTAGTTACGATAGCATACAAAAACCGCTATTGTTGA

Protein sequence

MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLENEEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKMKEKKNEPKGKQKETKLEVINVTDNEVDLDIFKVSDPPTLQQILVTIAYKNRYC

Homology

[Close]

BLAST of PI0018087.1 vs. ExPASy TrEMBL
Match: A0A5D3C8G6 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001550 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-27
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQALGTKEH+GRVRGVGGYVTP TYFH VKK  K E  IL+EN
Sbjct: 206 MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 265

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKL-KEKM 120
           EE R+RVSELEA+I +NLS PLS  GSCS+  +LE IE      EK K  E   L K K 
Sbjct: 266 EELRRRVSELEAQIRSNLSTPLSAHGSCSRPIVLEGIE------EKGKRIEVESLDKPKQ 325

Query: 121 KEKKNEPKGKQKETKLEVINVTD 143
           KEKK +   K  E +L+V+   D
Sbjct: 326 KEKKGKEVMKMNEPELDVLKERD 342

[Close]

BLAST of PI0018087.1 vs. ExPASy TrEMBL
Match: A0A5A7V0G8 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00370 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-27
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQALGTKEH+GRVRGVGGYVTP TYFH VKK  K E  IL+EN
Sbjct: 244 MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 303

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKL-KEKM 120
           EE R+RVSELEA+I +NLS PLS  GSCS+  +LE IE      EK K  E   L K K 
Sbjct: 304 EELRRRVSELEAQIRSNLSTPLSAHGSCSRPIVLEGIE------EKGKRIEVESLDKPKQ 363

Query: 121 KEKKNEPKGKQKETKLEVINVTD 143
           KEKK +   K  E +L+V+   D
Sbjct: 364 KEKKGKEVMKMNEPELDVLKERD 380

[Close]

BLAST of PI0018087.1 vs. ExPASy TrEMBL
Match: A0A5D3BIT1 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00300 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-27
Identity = 86/165 (52.12%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQAL TKEH+GRV GVGGYVTP TYFHLVKK LK E  IL+EN
Sbjct: 112 MNTDSSSVNRHCSNDVLTQALCTKEHNGRVHGVGGYVTPTTYFHLVKKTLKDEVNILVEN 171

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKMK 120
           EE R+RVSELEA+IH+NLS PLS  GSCS+  +L+ IE            + ++++   K
Sbjct: 172 EELRRRVSELEAQIHSNLSTPLSAHGSCSRPIMLKGIEEN---------GKRIEVESLNK 231

Query: 121 EKKNEPKGKQKETKLEVINVTDNEVDLDIFKVSD---PPTLQQIL 163
            K+NE KG       EV+ +  NE +LD+ K  D    PT ++I+
Sbjct: 232 PKENEKKGN------EVMKL--NEPELDVLKERDLIKMPTEKEIV 259

[Close]

BLAST of PI0018087.1 vs. ExPASy TrEMBL
Match: A0A5D3DZ21 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001090 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-27
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQALGTKEH+GRVRGVGGYVTP TYFH VKK  K E  IL+EN
Sbjct: 206 MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 265

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKL-KEKM 120
           EE R+RVSELEA+I +NLS PLS  GSCS+  +LE IE      EK K  E   L K K 
Sbjct: 266 EELRRRVSELEAQIRSNLSTPLSAHGSCSRPIVLEGIE------EKGKRIEVESLDKPKQ 325

Query: 121 KEKKNEPKGKQKETKLEVINVTD 143
           KEKK +   K  E +L+V+   D
Sbjct: 326 KEKKGKEVMKMNEPELDVLKERD 342

[Close]

BLAST of PI0018087.1 vs. ExPASy TrEMBL
Match: A0A5D3DME5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00220 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQALGTKEH+GRVRGVGGYVTP TYFH VKK  K E  IL+EN
Sbjct: 206 MNTDSSSVNRHCLNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 265

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKL-KEKM 120
           EE R+RVSELEA+I +NLS PLS  GSCS+  +LE IE      EK K  E   L K K 
Sbjct: 266 EELRRRVSELEAQIRSNLSTPLSAHGSCSRPIVLEGIE------EKGKRIEVESLDKPKH 325

Query: 121 KEKKNEPKGKQKETKLEVINVTD 143
           KEKK +   K  E +L+V+   D
Sbjct: 326 KEKKGKEVMKMNEPELDVLKERD 342

[Close]

BLAST of PI0018087.1 vs. NCBI nr
Match: XP_031739205.1 (uncharacterized protein LOC116402905 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 97/168 (57.74%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNT  SS K  S NDVLTQALGTKEHHGRVRGVGGYVTP  YFH VKK  KRE +I+LEN
Sbjct: 30  MNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVGGYVTPTNYFHSVKKTSKREDEIILEN 89

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKMK 120
           +E R+RVSELEA IH+NLS PLS  GSCSK ++LE+ +S KIIK KSKL + ++ KE   
Sbjct: 90  KELRRRVSELEAHIHSNLSRPLSGHGSCSKPNILEESDSMKIIKGKSKLMDKIEGKE--- 149

Query: 121 EKKNEPKGKQKETKLEVINVTDNEVDLDIFKVSDPPTLQ-QILVTIAY 168
                         +E INV D++V+LDIFKV D  + + + L+ I+Y
Sbjct: 150 --------------VEEINVNDDKVELDIFKVCDRSSNKLKFLIFISY 180

[Close]

BLAST of PI0018087.1 vs. NCBI nr
Match: XP_031737547.1 (uncharacterized protein LOC116402437 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-35
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNT  SS K  S NDVLTQALGTKEHHGRVRGVGGYVTP  YFH VKK  KRE +I+LEN
Sbjct: 30  MNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVGGYVTPTNYFHSVKKTSKREDEIILEN 89

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKMK 120
           +E R+RVSELEA IH+NLS PLS  GSCSK ++LE+ +S KIIK KSKL + ++ KE   
Sbjct: 90  KELRRRVSELEAHIHSNLSRPLSGHGSCSKPNILEESDSMKIIKGKSKLMDKIEGKE--- 149

Query: 121 EKKNEPKGKQKETKLEVINVTDNEVDLDIFKVSDPPTLQQILVTIAYK 169
                         +E INV D++V+LDIFKV D  + +   +  +Y+
Sbjct: 150 --------------VEEINVNDDKVELDIFKVCDRSSNKLKFLNYSYR 180

[Close]

BLAST of PI0018087.1 vs. NCBI nr
Match: XP_031741716.1 (uncharacterized protein LOC116403912 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-34
Identity = 96/168 (57.14%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNT  SS K  S NDVLTQALGTKEHHGRVRGV GYVTP  YFH VKK  KRE +I+LEN
Sbjct: 30  MNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVDGYVTPTNYFHSVKKTSKREDEIILEN 89

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKMK 120
           +E R+RVSELEA IH+NLS PLS  GSCSK ++LE+ +S KIIK KSKL + ++ KE   
Sbjct: 90  KELRRRVSELEAHIHSNLSRPLSGHGSCSKPNILEESDSMKIIKGKSKLMDKIEGKE--- 149

Query: 121 EKKNEPKGKQKETKLEVINVTDNEVDLDIFKVSDPPTLQ-QILVTIAY 168
                         +E INV D++V+LDIFKV D  + + + L+ I+Y
Sbjct: 150 --------------VEEINVNDDKVELDIFKVCDRSSNKLKFLIFISY 180

[Close]

BLAST of PI0018087.1 vs. NCBI nr
Match: XP_031741710.1 (uncharacterized protein LOC116403905 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-32
Identity = 92/153 (60.13%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKRE-KKILLE 60
           MNT  SS K  S NDVLTQALGTKEH+GRV GVGGYVTP  YFH VKK  KRE + I+LE
Sbjct: 113 MNTSSSSQKGHSSNDVLTQALGTKEHNGRVCGVGGYVTPTNYFHSVKKTSKREDENIILE 172

Query: 61  NEEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKLKEKM 120
           NEE R+RVSELEA IH+NLS PLS  GSCSK ++LE+ +S KIIK KSKL + ++ KE  
Sbjct: 173 NEELRRRVSELEAHIHSNLSRPLSGHGSCSKPNILEESDSMKIIKGKSKLMDTIEGKE-- 232

Query: 121 KEKKNEPKGKQKETKLEVINVTDNEVDLDIFKV 153
                          +E INV D++V+LDIFKV
Sbjct: 233 ---------------VEEINVNDDKVELDIFKV 248

[Close]

BLAST of PI0018087.1 vs. NCBI nr
Match: TYK29003.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-26
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MNTDPSSLKILSCNDVLTQALGTKEHHGRVRGVGGYVTPMTYFHLVKKILKREKKILLEN 60
           MNTD SS+     NDVLTQALGTKEH+GRVRGVGGYVTP TYFH VKK  K E  IL+EN
Sbjct: 206 MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 265

Query: 61  EEHRKRVSELEARIHNNLSIPLSRQGSCSKVSLLEKIESKKIIKEKSKLKENVKL-KEKM 120
           EE R+RVSELEA+I +NLS PLS  GSCS+  +LE IE      EK K  E   L K K 
Sbjct: 266 EELRRRVSELEAQIRSNLSTPLSAHGSCSRPIVLEGIE------EKGKRIEVESLDKPKQ 325

Query: 121 KEKKNEPKGKQKETKLEVINVTD 143
           KEKK +   K  E +L+V+   D
Sbjct: 326 KEKKGKEVMKMNEPELDVLKERD 342

The following BLAST results are available for this feature:

BLAST of PI0018087.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018087.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8G6	8.4e-27	59.44	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V0G8	8.4e-27	59.44	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BIT1	8.4e-27	52.12	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DZ21	8.4e-27	59.44	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DME5	1.4e-26	59.44	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of PI0018087.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739205.1	1.6e-35	57.74	uncharacterized protein LOC116402905 [Cucumis sativus]	[more]
XP_031737547.1	2.0e-35	56.55	uncharacterized protein LOC116402437 [Cucumis sativus]	[more]
XP_031741716.1	1.0e-34	57.14	uncharacterized protein LOC116403912 [Cucumis sativus]	[more]
XP_031741710.1	4.7e-32	60.13	uncharacterized protein LOC116403905 [Cucumis sativus]	[more]
TYK29003.1	1.7e-26	59.44	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]

BLAST of PI0018087.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	COILS	Coil	Coil	coord: 53..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0018087	PI0018087	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018087.1-exon	PI0018087.1-exon-chr06:18740626..18741144	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018087.1-cds	PI0018087.1-cds-chr06:18740626..18741144	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0018087.1	PI0018087.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity