PI0017080.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0017080.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Phloem filament protein
Location	chr01: 1435779 .. 1436582 (-)
Sequence length	657
RNA-Seq Expression	PI0017080.1
Synteny	PI0017080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAACACTCATGAAATAGAACCCCAATTAGTTAATTTTTACATAAACAACTAAGGTCATAAAAAATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAGGTGGATTAAATTCCCTAATGTTTTGATTCCTTGTTTGCAAGGCATTGCAGAGCATGGAGTAGAAGGGTTCAACAAAAAATATGAAGGGAGCCTGAAATACAAGAATGTCATTGAAGGTTGGTATAAGGAGTTGGATGATGATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGATTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATACTCAAAATGAAGAATCTACCATCACTCTTGAATCTTTTGATCAGCTAATTTCCTACCTAAAATAAAGTAATTACATCAATCTTTCCTTTCCCTTTTGTCTCTGCAATCTTTGTCACTTATTTGTATGGTTTGTTTTGTGTCTTTTGCCATCTATATATTGTTATATTTGAATAATCATATGTAGTAATGAGTCCTACGAGTTTTTTGTATTAGGTTTGAAGCTTTTCGGGCGAGTTTTGTTTCTCTTTTTGTAATCGCTCTAGCAATTCTATTGCGCATCAAGGCGTTGTTTTGAGTGGGTCTTCTTTTGTGGACGACTTTTAGGAGTTTCGAGGGTGGTCGTAAGGATTGAGGATTTTTGAAGTGTTTCTTTTGAAAAAAAAAAAAAGCTATATATCAAACTTTCCCTTTTGTGTTGTGCTCTAGCTCTACAATATTCTTTGCCACTTATATATATGGTTGTGTGTTTTGTC

mRNA sequence

AAACAACACTCATGAAATAGAACCCCAATTAGTTAATTTTTACATAAACAACTAAGGTCATAAAAAATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAGGTGGATTAAATTCCCTAATGTTTTGATTCCTTGTTTGCAAGGCATTGCAGAGCATGGAGTAGAAGGGTTCAACAAAAAATATGAAGGGAGCCTGAAATACAAGAATGTCATTGAAGGTTGGTATAAGGAGTTGGATGATGATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGATTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATACTCAAAATGAAGAATCTACCATCACTCTTGAATCTTTTGATCAGCTAATTTCCTACCTAAAATAAAGTTTGAAGCTTTTCGGGCGAGTTTTGTTTCTCTTTTTGTAATCGCTCTAGCAATTCTATTGCGCATCAAGGCGTTGTTTTGAGTGGGTCTTCTTTTGTGGACGACTTTTAGGAGTTTCGAGGGTGGTCGTAAGGATTGAGGATTTTTGAAGTGTTTCTTTTGAAAAAAAAAAAAAGCTATATATCAAACTTTCCCTTTTGTGTTGTGCTCTAGCTCTACAATATTCTTTGCCACTTATATATATGGTTGTGTGTTTTGTC

Coding sequence (CDS)

ATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAGGTGGATTAAATTCCCTAATGTTTTGATTCCTTGTTTGCAAGGCATTGCAGAGCATGGAGTAGAAGGGTTCAACAAAAAATATGAAGGGAGCCTGAAATACAAGAATGTCATTGAAGGTTGGTATAAGGAGTTGGATGATGATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGATTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATACTCAAAATGAAGAATCTACCATCACTCTTGAATCTTTTGATCAGCTAATTTCCTACCTAAAATAA

Protein sequence

MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGNTIRYRLHVQAYDCLRRLLKFEAILLQQHTQNEESTITLESFDQLISYLK

Homology

[Close]

BLAST of PI0017080.1 vs. ExPASy TrEMBL
Match: A0A5A7SN25 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001820 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.9e-46
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSLPSGCSK+WIK P+VLIPCLQ IAEHGVE F KKY+ SL YKNV+EGWY+ELDD GN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQLISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQH Q NEESTITLESFD++ISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of PI0017080.1 vs. ExPASy TrEMBL
Match: E5GCR7 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.9e-46
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSLPSGCSK+WIK P+VLIPCLQ IAEHGVE F KKY+ SL YKNV+EGWY+ELDD GN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQLISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQH Q NEESTITLESFD++ISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of PI0017080.1 vs. ExPASy TrEMBL
Match: A0A0A0K471 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-46
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSLPS CSKRWIKFPNVLIPCLQ IAEHG+E F KK+E SL YKNV+EGWYKELDD GN
Sbjct: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQLISYL 109
           TIRYRLH+QAYDC+RRLLKFEA+LLQQH Q NE+STITLESF+Q+ISYL
Sbjct: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQIISYL 109

[Close]

BLAST of PI0017080.1 vs. ExPASy TrEMBL
Match: A0A5D3C4U6 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001810 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.6e-42
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSL SGCSK+WIK P+VLIPCLQ IAEHGVE F KKY+ SL YKNV+EGWY+ELD  GN
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQL 105
           T+RYRLHVQAYDCLRRLLKFEAILLQQH Q NEESTITLESFD++
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of PI0017080.1 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 10  KRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGNTIRYRLHVQ 69
           ++WI+ P+V  PC+Q +AE  V+ FN+KY   LK+ +V EGWY EL    N+++YRLH++
Sbjct: 218 EKWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSP--NSLKYRLHIK 277

Query: 70  AYDCLRRLLKFEAILLQQHTQNE 93
           A D L R L +E ++ +   Q+E
Sbjct: 278 AIDFLERCLNYEFVVFEVKYQSE 298

[Close]

BLAST of PI0017080.1 vs. NCBI nr
Match: ADN34265.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 8.1e-46
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSLPSGCSK+WIK P+VLIPCLQ IAEHGVE F KKY+ SL YKNV+EGWY+ELDD GN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQLISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQH Q NEESTITLESFD++ISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of PI0017080.1 vs. NCBI nr
Match: TYK06877.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
           MSSL SGCSK+WIK P+VLIPCLQ IAEHGVE F KKY+ SL YKNV+EGWY+ELD  GN
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHTQ-NEESTITLESFDQL 105
           T+RYRLHVQAYDCLRRLLKFEAILLQQH Q NEESTITLESFD++
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of PI0017080.1 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 2   SSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGNT 61
           S+ P GCSK+WIK  ++  PC++  A+  +E FN K+ GSL+YK VIEGW KELD+  + 
Sbjct: 3   STFPCGCSKKWIKITDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDE--SH 62

Query: 62  IRYRLHVQAYDCLRRLLKFEAILLQQHTQNEESTITLESFDQ 104
           IRYRL VQA DCLRRLL+FEAI+   +++N E+T  LESF+Q
Sbjct: 63  IRYRLLVQANDCLRRLLEFEAIVFAHYSENGETTRILESFEQ 102

[Close]

BLAST of PI0017080.1 vs. NCBI nr
Match: KAE8645824.1 (hypothetical protein Csa_017165 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MSSLPSGCSKRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGN 60
          MSSLPS CSKRWIKFPNVLIPCLQ IAEHG+E F KK+E SL YKNV+EGWYKELDD GN
Sbjct: 1  MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61 TI 63
          TI
Sbjct: 61 TI 62

[Close]

BLAST of PI0017080.1 vs. NCBI nr
Match: KAG6588835.1 (hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 10  KRWIKFPNVLIPCLQGIAEHGVEGFNKKYEGSLKYKNVIEGWYKELDDDGNTIRYRLHVQ 69
           ++WI+ P+V  PC+Q +AE  V+ FN+KY   LK+ +V EGWY EL    N+++YRLH++
Sbjct: 218 EKWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSP--NSLKYRLHIK 277

Query: 70  AYDCLRRLLKFEAILLQQHTQNE 93
           A D L R L +E ++ +   Q+E
Sbjct: 278 AIDFLERCLNYEFVVFEVKYQSE 298

The following BLAST results are available for this feature:

BLAST of PI0017080.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN25	3.9e-46	85.32	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR7	3.9e-46	85.32	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0K471	8.7e-46	83.49	Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1	[more]
A0A5D3C4U6	7.6e-42	81.90	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EIQ8	2.2e-12	43.37	uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]

BLAST of PI0017080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34265.1	8.1e-46	85.32	phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament...	[more]
TYK06877.1	1.6e-41	81.90	phloem filament protein [Cucumis melo var. makuwa]	[more]
XP_038887119.1	3.3e-23	55.88	uncharacterized protein LOC120077304 [Benincasa hispida]	[more]
KAE8645824.1	2.1e-22	83.87	hypothetical protein Csa_017165 [Cucumis sativus]	[more]
KAG6588835.1	4.5e-12	43.37	hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0017080.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 14..107 e-value: 4.6E-6 score: 28.5
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 6..105
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 12..94
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 21..101 e-value: 9.5E-19 score: 67.2
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 6..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0017080	PI0017080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017080.1-exon	PI0017080.1-exon-chr01:1435779..1436038	exon
PI0017080.1-exon	PI0017080.1-exon-chr01:1436186..1436582	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017080.1-three_prime_utr	PI0017080.1-three_prime_utr-chr01:1435779..1436038	three_prime_UTR
PI0017080.1-three_prime_utr	PI0017080.1-three_prime_utr-chr01:1436186..1436186	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017080.1-cds	PI0017080.1-cds-chr01:1436187..1436516	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017080.1-five_prime_utr	PI0017080.1-five_prime_utr-chr01:1436517..1436582	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0017080.1	PI0017080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity