PI0016482.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0016482.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr10: 19798444 .. 19799965 (+)
Sequence length	408
RNA-Seq Expression	PI0016482.1
Synteny	PI0016482.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCTTGCAAGGTGTGTGTACTTGTCTCTTTTTCTTTTTTCTTCCTCTTCTTCTTCTCTCTCTCTCTGAGAATAATGAAGTTATTTGTGATCTTGCAGCAACTGAAGCTGTGCATTCTCCTCGTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTATGTTTGAGAGTGCTTTTAAAATAAGTCATTTTGACATAAATTAATTTGAGTAAACTATTCAAGTACCTTAGTAAAAAAAAAGTGTTCAATATTAAATCAATCTTGTTTTTGTTTTCATTCTCTTAACAGTGGTTTTAATGTTTCCTTGACAATCATTCTTCCTCAAAATGCTCTTTCATTTCAAACACCTAGTCAAATTGACCCTGGTTTTGATCAAGTTATAACAACTACTATAGGCCATATAAAAAACATTCACAAAACATAGTCGTAATCCTGTTTGAAATGACTGTACAAGTACTTAAAATTCAAAAGTCATTTCAAGCCGGCTCTAAATAACTAACTCATTTGACCATGATTATATCTGTCTTCTCTTGTTGCTGTTGAAGTTGTGATTACTGATGATTATCCTGGAAACAGGTTGAAGCTCAAGGTTTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTGATTCATGATTACTATATTTTTTTTCAAAAAAAATTCCAAAAATATGCAAGTTTCTTAAATAAGTCATACCTGTCATGTCTACACTCTTGCCAGTTCTTTCACTAAAAACTGCAACAATATTGCTTCCTAGAATATGGAAAATTTGAGGCATAGCCATATTTCAGTAACACCACATTAATTAAAGAAAATAAGTACTCTATTTCACATTTTAGATACATTTCTGCACTCTCAAATACTGTCCCTGCCATTTAATTCATTCCATTTTAGTTTAGCTATTGTTCATTTAAAATCAATTCACCATCAATTCACCATCAATTCCTTCCCCTTAATAGTTAATATCCTTTGTTTATATTAGGTGGGGGTTTTTTAAAGTTATGTCATTCATCTCATTTTTTCACCAAAATAACGTATAACTCAATTGGTTTAAATATATGTCCTTAATAAAGAAATTAGATGTTTGAATTCACTCACTCAAAATATTGAAGAACTAAAAAAACAATGCATATTTTTAATACAACAAATATGGGGTGTTAGGATATGAACATAATAATATATTATTATGAAAATGGAATTAATGTAATTATGTAATTGCTAACATTTACAGATCAGCCTAATGAAACGAAGGAAAAAGGAAGGAACTTAAACAAAGGAAAAGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCGCGGATTTTCACAATGGACTATGCTCACCTAAAACGGCGTCGTCCTGTTCACAACATGTCGCTCAAGCGTCCTTGA

mRNA sequence

ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCTTGCAAGCAACTGAAGCTGTGCATTCTCCTCGTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTTGAAGCTCAAGGTTTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGATCAGCCTAATGAAACGAAGGAAAAAGGAAGGAACTTAAACAAAGGAAAAGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCGCGGATTTTCACAATGGACTATGCTCACCTAAAACGGCGTCGTCCTGTTCACAACATGTCGCTCAAGCGTCCTTGA

Coding sequence (CDS)

ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCTTGCAAGCAACTGAAGCTGTGCATTCTCCTCGTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTTGAAGCTCAAGGTTTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGATCAGCCTAATGAAACGAAGGAAAAAGGAAGGAACTTAAACAAAGGAAAAGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCGCGGATTTTCACAATGGACTATGCTCACCTAAAACGGCGTCGTCCTGTTCACAACATGTCGCTCAAGCGTCCTTGA

Protein sequence

MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVDKKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAHLKRRRPVHNMSLKRP

Homology

[Close]

BLAST of PI0016482.1 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 122/135 (90.37%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATE VHSP LVLGRKFKMLEEAARVD
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           KKVEAQGFQVAKQKDNHKENVS Q    +E+G  LNKGKGRKWV VADMSS+IFTMDYAH
Sbjct: 61  KKVEAQGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           LKRRRPVHNMSLKRP
Sbjct: 121 LKRRRPVHNMSLKRP 130

[Close]

BLAST of PI0016482.1 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.2e-51
Identity = 116/135 (85.93%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLIVMAILCCVSIL+LLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKML+EAAR+D
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K+VE QGFQVAKQ DNHKENVS +    +EKG  LNK KGRK VNVADMSS+IFTMDYAH
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           LKRRRPVHNMSL RP
Sbjct: 121 LKRRRPVHNMSLNRP 131

[Close]

BLAST of PI0016482.1 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.1e-41
Identity = 99/135 (73.33%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLI MA+LCCVS+L+L +P ASSHALDQSSPLQ TEAVHSPRLVL RKFKMLEEA    
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEA---- 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K VEA GFQ +KQ+D  KENVS QP + +E     NKGKGRKW NVADMSSR  TMDYAH
Sbjct: 61  KVVEAHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           +KRRRPVHNMS +RP
Sbjct: 121 IKRRRPVHNMSRQRP 126

[Close]

BLAST of PI0016482.1 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.0e-41
Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQATEAVHSPRLVL RKFKMLEEA    
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K VEA GFQ +KQ+D  KE VS Q  + +E     NKGKGRKW NVADMSSR FTMDYAH
Sbjct: 61  KVVEAHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           +KRRRPVHNMS +RP
Sbjct: 121 IKRRRPVHNMSRQRP 126

[Close]

BLAST of PI0016482.1 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 84/135 (62.22%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLIVMA LCCVS+L+LLIP ASSHAL+QS  LQATEAV   R    RKF+++EEA    
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAV---RFRPTRKFRLMEEAG--- 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
             V+A G  V  Q DNH++NVS QP + ++KG NL++ KGRKW++V DMSSR FTMDY H
Sbjct: 61  -AVKAHGSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMDYVH 120

Query: 121 LKRRRPVHNMSLKRP 136
            +RRRPVHNMS +RP
Sbjct: 121 TRRRRPVHNMSRQRP 128

[Close]

BLAST of PI0016482.1 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 4.6e-51
Identity = 116/135 (85.93%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLIVMAILCCVSIL+LLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKML+EAAR+D
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K+VE QGFQVAKQ DNHKENVS +    +EKG  LNK KGRK VNVADMSS+IFTMDYAH
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           LKRRRPVHNMSL RP
Sbjct: 121 LKRRRPVHNMSLNRP 131

[Close]

BLAST of PI0016482.1 vs. NCBI nr
Match: KAE8648772.1 (hypothetical protein Csa_008620 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 4.6e-51
Identity = 117/130 (90.00%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 6   MAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVDKKVEA 65
           MAILCCVSILVLLIPSASSHALDQSSPLQATE VHSP LVLGRKFKMLEEAARVDKKVEA
Sbjct: 1   MAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVDKKVEA 60

Query: 66  QGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAHLKRRR 125
           QGFQVAKQKDNHKENVS Q    +E+G  LNKGKGRKWV VADMSS+IFTMDYAHLKRRR
Sbjct: 61  QGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120

Query: 126 PVHNMSLKRP 136
           PVHNMSLKRP
Sbjct: 121 PVHNMSLKRP 125

[Close]

BLAST of PI0016482.1 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 99/135 (73.33%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLI MA+LCCVS+L+L +P ASSHALDQSSPLQ TEAVHSPRLVL RKFKMLEEA    
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEA---- 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K VEA GFQ +KQ+D  KENVS QP + +E     NKGKGRKW NVADMSSR  TMDYAH
Sbjct: 61  KVVEAHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           +KRRRPVHNMS +RP
Sbjct: 121 IKRRRPVHNMSRQRP 126

[Close]

BLAST of PI0016482.1 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEAARVD 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQATEAVHSPRLVL RKFKMLEEA    
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYAH 120
           K VEA GFQ +KQ+D  KE VS Q  + +E     NKGKGRKW NVADMSSR FTMDYAH
Sbjct: 61  KVVEAHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 136
           +KRRRPVHNMS +RP
Sbjct: 121 IKRRRPVHNMSRQRP 126

[Close]

BLAST of PI0016482.1 vs. NCBI nr
Match: XP_023525366.1 (uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATE-AVHSPRLVLGRKFKMLEEAARV 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQ TE AVHSPRLVL RKFKMLEEA   
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60

Query: 61  DKKVEAQGFQVAKQKDNHKENVSDQPNETKEKGRNLNKGKGRKWVNVADMSSRIFTMDYA 120
            K VEA GFQ +KQ+D  KENVS Q  + +E     NKGKGRKW NV DMSSR FTMDYA
Sbjct: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYA 120

Query: 121 HLKRRRPVHNMSLKRP 136
           H+KRRRPVHNMS +RP
Sbjct: 121 HIKRRRPVHNMSRQRP 127

The following BLAST results are available for this feature:

BLAST of PI0016482.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016482.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA1	1.8e-53	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1	[more]
A0A5D3CCI7	2.2e-51	85.93	Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1IR14	6.1e-41	73.33	uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668...	[more]
A0A6J1GWC1	8.0e-41	73.33	uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1D6T9	2.6e-31	62.22	uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of PI0016482.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034486.1	4.6e-51	85.93	putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu...	[more]
KAE8648772.1	4.6e-51	90.00	hypothetical protein Csa_008620 [Cucumis sativus]	[more]
XP_022977309.1	1.3e-40	73.33	uncharacterized protein LOC111477668 [Cucurbita maxima]	[more]
XP_022956442.1	1.7e-40	73.33	uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet...	[more]
XP_023525366.1	2.6e-38	72.06	uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0016482.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0016482	PI0016482	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016482.1-exon	PI0016482.1-exon-chr10:19798444..19798546	exon
PI0016482.1-exon	PI0016482.1-exon-chr10:19798634..19798716	exon
PI0016482.1-exon	PI0016482.1-exon-chr10:19799137..19799197	exon
PI0016482.1-exon	PI0016482.1-exon-chr10:19799805..19799965	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016482.1-cds	PI0016482.1-cds-chr10:19798444..19798546	CDS
PI0016482.1-cds	PI0016482.1-cds-chr10:19798634..19798716	CDS
PI0016482.1-cds	PI0016482.1-cds-chr10:19799137..19799197	CDS
PI0016482.1-cds	PI0016482.1-cds-chr10:19799805..19799965	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0016482.1	PI0016482.1-protein	polypeptide