PI0016476.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0016476.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr10: 3451371 .. 3451646 (+)
Sequence length	276
RNA-Seq Expression	PI0016476.1
Synteny	PI0016476.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGAAGTGCAGTCAGTTAATCCAGGAGGTAGAAGAAATGTGGAGGAGGAGTTATATGATCATGTATCGCAACGACTGATAGATGGTTTATCTAGGAAGCTGGAGAAAAAGTATGGAATAGAACAGCTTAAGGCGTTAGGTGCTAAGAAATTTACAGAAATGGAGGAACCTGAGCAAGCGGAGAAAATGTTGCGGACATTGAAGAAATGTTTTCGAGTAATGCAGTGCCCTGAGGATAGGAAGGTGTCTTTTGCAGTGTTTTTACTATAA

mRNA sequence

ATGGATTCAGAAGTGCAGTCAGTTAATCCAGGAGGTAGAAGAAATGTGGAGGAGGAGTTATATGATCATGTATCGCAACGACTGATAGATGGTTTATCTAGGAAGCTGGAGAAAAAGTATGGAATAGAACAGCTTAAGGCGTTAGGTGCTAAGAAATTTACAGAAATGGAGGAACCTGAGCAAGCGGAGAAAATGTTGCGGACATTGAAGAAATGTTTTCGAGTAATGCAGTGCCCTGAGGATAGGAAGGTGTCTTTTGCAGTGTTTTTACTATAA

Coding sequence (CDS)

ATGGATTCAGAAGTGCAGTCAGTTAATCCAGGAGGTAGAAGAAATGTGGAGGAGGAGTTATATGATCATGTATCGCAACGACTGATAGATGGTTTATCTAGGAAGCTGGAGAAAAAGTATGGAATAGAACAGCTTAAGGCGTTAGGTGCTAAGAAATTTACAGAAATGGAGGAACCTGAGCAAGCGGAGAAAATGTTGCGGACATTGAAGAAATGTTTTCGAGTAATGCAGTGCCCTGAGGATAGGAAGGTGTCTTTTGCAGTGTTTTTACTATAA

Protein sequence

MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPEQAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL

Homology

[Close]

BLAST of PI0016476.1 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1  MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
          +DSE  ++NP  RR  EE LYD  +QRLI+ L+++L+K +GIE++KALGA +F  +E  E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
          +AEK +RTL+KCFRVMQCP++R+V+ AVFLL
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRVNLAVFLL 95

[Close]

BLAST of PI0016476.1 vs. ExPASy TrEMBL
Match: A0A5D3CSN0 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00330 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-17
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
           +D EV  VN   RR  EE +YD V+Q +ID ++++LEKK+GIE+L+ALG  +FT   EP 
Sbjct: 18  IDLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPR 77

Query: 61  QAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           +A+K ++TL+KCFRV QC ++RKV  A+FLL
Sbjct: 78  EADKRIKTLEKCFRVTQCSQERKVDLAMFLL 108

[Close]

BLAST of PI0016476.1 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-13
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 2   DSEVQSVNPGGRRNVEEELYDHVSQRLIDGL---SRKLEKKYGIEQLKALGAKKFTEMEE 61
           +S+ +S  P    N+EE+L D ++QRLI G+       EKKYGIE+LKALGA  F     
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 62  PEQAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           P  AE  L  ++KCFRV +CPEDRKV  A FLL
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 138

[Close]

BLAST of PI0016476.1 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 2   DSEVQSVNPGGRRNVEEELYDHVSQRLIDGL---SRKLEKKYGIEQLKALGAKKFTEMEE 61
           +S+ +S  P    NVEE+L D ++QRLI G+       EKKYGIE+LKALGA  F     
Sbjct: 27  ESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTN 86

Query: 62  PEQAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           P  AE+ L  ++KCF+V +C EDRKV  A FLL
Sbjct: 87  PVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 119

[Close]

BLAST of PI0016476.1 vs. ExPASy TrEMBL
Match: A0A5D3CDA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001250 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
          MD E  S+NP  RR+ +E LYD V+QRLID L+++ EKK+ IE+LKALGA KF     P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 QAEKMLRTLKKCF 74
          +AEK  RTL+KCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]

BLAST of PI0016476.1 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1  MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
          +DSE  ++NP  RR  EE LYD  +QRLI+ L+++L+K +GIE++KALGA +F  +E  E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
          +AEK +RTL+KCFRVMQCP++R+V+ AVFLL
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRVNLAVFLL 95

[Close]

BLAST of PI0016476.1 vs. NCBI nr
Match: KAA0066608.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
           +D EV  VN   RR  EE +YD V+Q +ID ++++LEKK+GIE+L+ALG  +FT   EP 
Sbjct: 18  IDLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPR 77

Query: 61  QAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           +A+K ++TL+KCFRV QC ++RKV  A+FLL
Sbjct: 78  EADKRIKTLEKCFRVTQCSQERKVDLAMFLL 108

[Close]

BLAST of PI0016476.1 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-13
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 2   DSEVQSVNPGGRRNVEEELYDHVSQRLIDGL---SRKLEKKYGIEQLKALGAKKFTEMEE 61
           +S+ +S  P    N+EE+L D ++QRLI G+       EKKYGIE+LKALGA  F     
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 62  PEQAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           P  AE  L  ++KCFRV +CPEDRKV  A FLL
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 138

[Close]

BLAST of PI0016476.1 vs. NCBI nr
Match: KAA0037861.1 (hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821.1 hypothetical protein E5676_scaffold127G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDSEVQSVNPGGRRNVEEELYDHVSQRLIDGLSRKLEKKYGIEQLKALGAKKFTEMEEPE 60
          MD E  S+NP  RR+ +E LYD V+QRLID L+++ EKK+ IE+LKALGA KF     P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 QAEKMLRTLKKCF 74
          +AEK  RTL+KCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]

BLAST of PI0016476.1 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 2   DSEVQSVNPGGRRNVEEELYDHVSQRLIDGL---SRKLEKKYGIEQLKALGAKKFTEMEE 61
           +S+ +S  P    NVEE+L D ++QRLI G+       EKKYGIE+LKALGA  F     
Sbjct: 27  ESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTN 86

Query: 62  PEQAEKMLRTLKKCFRVMQCPEDRKVSFAVFLL 92
           P  AE+ L  ++KCF+V +C EDRKV  A FLL
Sbjct: 87  PVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 119

The following BLAST results are available for this feature:

BLAST of PI0016476.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016476.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI31	1.4e-20	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
A0A5D3CSN0	9.3e-17	52.75	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3DES5	3.6e-13	50.54	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SJ99	3.1e-12	49.46	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CDA4	3.1e-12	57.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0016476.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61535.1	2.9e-20	57.14	hypothetical protein Csa_006696 [Cucumis sativus]	[more]
KAA0066608.1	1.9e-16	52.75	A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase ancho...	[more]
KAA0035225.1	7.5e-13	50.54	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0037861.1	6.4e-12	57.53	hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821...	[more]
KAA0026280.1	6.4e-12	49.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]

BLAST of PI0016476.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0016476	PI0016476	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016476.1-exon	PI0016476.1-exon-chr10:3451371..3451646	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016476.1-cds	PI0016476.1-cds-chr10:3451371..3451646	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0016476.1	PI0016476.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0003824	catalytic activity