PI0015093.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0015093.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein RADIALIS-like 1
Location	chr01: 6178753 .. 6180416 (-)
Sequence length	652
RNA-Seq Expression	PI0015093.1
Synteny	PI0015093.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATATCCTTTTTCCTTTAAACACAAACATTGAATTCTTTTTATTCTAACCCTTTTTTTATAGTTTTTCTCTCCCCATTATTTGAAACCCAATTAAAGTTAGAAATATACATTTAAGAAAATTAAATTATGGCTTCAATGTCAGCTCATGGTTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACAGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAAGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAAGCTCAAGAGGCAATTAAGGGCCACTTAACATATGATCAAAATATGGAGGTAATTTCATTTATTTCGGGTCCAGTACTTGATAATAATTTTTTTACCTCACTTTTGATGAAACGTTTCTTTTAAGTTGTATGTATAGAAATTCAAGAAACAACAAAAATATTAAGTTTTTTCAACGTGAGCTTAGTTCAATGATAATTGTCATGACATCCTTCTGTGGAGGTTGTAGGTTTGAACTTCTACTGATGCGATTGTTGTATTAAAAATTAAAAACAAATTCAAGTTTTCTTTTTCATATTTTTCAAAACATAATATAATGATTGTTTTTATCTCATCTCTAACTTCTAAATTCATAAGAGTACCTAAATATAACATAAATGTAGATGTTTCCAATGCGTTTATGTTTAAAATATTATTTTCATGAATTTTTTTTTACATATTTTGTTATTTAAAAATTTAAAAACTCGTTATGCTTTTCGAGAAAACAAGAAACAATATATGAAAAATAAGAAATAAGAAATAAGAAACTTAAATATTATTAAATAAACCTTTTTTCCTTTTTTTTTTCTCTTTTCATTTTTCAAAAGATTAAACTTGTTGCACCAGTTCCACCCATGTGTGCTTTCTTTACCACTCTTATAAAAGAATTTTTTTTTTTAAAAAAAAGAAGAAAAGTAGCTTTAATTTTTTTTTTTTTTTAATTTAACTGAGAGTTTAAATGTAATTTTAGAAAATGCAAAAGATATACAATACATATTTTTGGAAATTAAAACAAGAAAATTGGAGTCTGATTCTATGACAAAGCCTGTCTAACCATTTGATTCTTTATCTTATTCTGAAGCCACAAAGATTATAGCCTTTATTCAGACTTCACGGACATGGTTTCATTATCAATGAACAGTGACCTCATTTCTCATAGATTTAAAGCTAGATTTAGAGACTGAAGAAAAAGACAATAAAATCTTTACTAATAATTGAGAGACGGCAAAATTGTCTTCGTGTTTTTTTGTATTAAAGTATTGATATAATTAAATTTATCTGTTTTCCTTTGACTTTTTTTCAGGATGAGAAGCATGAAGTTGAATGAAAGCCAGGTGCAGTACTGGAAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCTTTTTTTTCTAACAAAACAGGAACATATATATATATATATTTGAATTTCTCTATTGTATCTCTTCAAATCCAATTGTAATAGTCAAATGAATAAGCCTTCATGAATTTATTGTATTAAATCAAATCATCAATATTATGATTTATATTGAGATTTGAAGAGGCTTTTAAT

mRNA sequence

TTCATATCCTTTTTCCTTTAAACACAAACATTGAATTCTTTTTATTCTAACCCTTTTTTTATAGTTTTTCTCTCCCCATTATTTGAAACCCAATTAAAGTTAGAAATATACATTTAAGAAAATTAAATTATGGCTTCAATGTCAGCTCATGGTTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACAGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAAGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAAGCTCAAGAGGCAATTAAGGGCCACTTAACATATGATCAAAATATGGAGGATGAGAAGCATGAAGTTGAATGAAAGCCAGGTGCAGTACTGGAAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCTTTTTTTTCTAACAAAACAGGAACATATATATATATATATTTGAATTTCTCTATTGTATCTCTTCAAATCCAATTGTAATAGTCAAATGAATAAGCCTTCATGAATTTATTGTATTAAATCAAATCATCAATATTATGATTTATATTGAGATTTGAAGAGGCTTTTAAT

Coding sequence (CDS)

ATGGCTTCAATGTCAGCTCATGGTTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACAGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAAGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAAGCTCAAGAGGCAATTAA

Protein sequence

MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

Homology

[Close]

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSSRG 79
            IE+G VPFP YR+S G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-25
Identity = 53/77 (68.83%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 5  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKH 64
          S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRSSRGN 80
          IESGKVPFP YR++ GN
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-25
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 3  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          SMS++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRGN 80
           IE+G VPFP Y+++ GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-22
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          V  IESG+ P P   S GN
Sbjct: 61 VNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-21
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRGN 80
          + +IE+G+VP P Y++   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of PI0015093.1 vs. ExPASy TrEMBL
Match: A0A5A7SYM4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00290 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYR+SRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of PI0015093.1 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYR+SRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of PI0015093.1 vs. ExPASy TrEMBL
Match: A0A0A0K344 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYRSSR N
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of PI0015093.1 vs. ExPASy TrEMBL
Match: A0A6J1IA78 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYRSSRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of PI0015093.1 vs. ExPASy TrEMBL
Match: A0A6J1GJG0 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYRSSRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of PI0015093.1 vs. NCBI nr
Match: KAA0036170.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYR+SRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of PI0015093.1 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYR+SRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of PI0015093.1 vs. NCBI nr
Match: XP_004151116.1 (protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_020265 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYRSSR N
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of PI0015093.1 vs. NCBI nr
Match: XP_022952073.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-like 1 [Cucurbita maxima] >XP_023554705.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572043.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRGN 80
          VKHIESGKVPFPYRSSRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of PI0015093.1 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-30
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMS+HGSG WTAKQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVK HY LL+ED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKHIESGKVPFPYRSSRG 79
          VK IESG+VPFPYRSSRG
Sbjct: 61 VKFIESGQVPFPYRSSRG 78

[Close]

BLAST of PI0015093.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-26
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSSRG 79
            IE+G VPFP YR+S G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of PI0015093.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-26
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 3  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          SMS++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRGN 80
           IE+G VPFP Y+++ GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of PI0015093.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 7.4e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRGN 80
          + +IE+G+VP P Y++   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of PI0015093.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 7.4e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRGN 80
          + +IE+G+VP P Y++   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of PI0015093.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

The following BLAST results are available for this feature:

BLAST of PI0015093.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	1.6e-25	69.23	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	5.9e-25	68.83	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	7.7e-25	66.67	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	3.6e-22	62.03	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	1.0e-21	62.50	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of PI0015093.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYM4	2.4e-37	98.73	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BGF6	7.0e-37	97.47	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
A0A0A0K344	1.2e-36	97.47	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 S...	[more]
A0A6J1IA78	2.9e-35	93.67	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1	[more]
A0A6J1GJG0	2.9e-35	93.67	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1	[more]

BLAST of PI0015093.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036170.1	5.0e-37	98.73	protein RADIALIS-like 1 [Cucumis melo var. makuwa]	[more]
XP_008447025.1	1.4e-36	97.47	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_004151116.1	2.5e-36	97.47	protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_0...	[more]
XP_022952073.1	6.1e-35	93.67	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-li...	[more]
XP_038888369.1	3.4e-30	84.62	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of PI0015093.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	1.1e-26	69.23	RAD-like 1	[more]
AT2G21650.1	5.5e-26	66.67	Homeodomain-like superfamily protein	[more]
AT1G75250.1	7.4e-23	62.50	RAD-like 6	[more]
AT1G75250.2	7.4e-23	62.50	RAD-like 6	[more]
AT1G19510.1	2.8e-22	65.28	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.6E-8 score: 44.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 10..58 score: 6.434677
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 3.06203E-7 score: 40.6366
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..58 e-value: 6.0E-7 score: 29.6
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 7.2E-24 score: 85.4
None	No IPR available	PANTHER	PTHR43952:SF74	PROTEIN RADIALIS-LIKE 2	coord: 5..75
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 5..75
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 10.615332
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0015093	PI0015093	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0015093.1-exon	PI0015093.1-exon-chr01:6178753..6179004	exon
PI0015093.1-exon	PI0015093.1-exon-chr01:6180017..6180416	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0015093.1-three_prime_utr	PI0015093.1-three_prime_utr-chr01:6178753..6179004	three_prime_UTR
PI0015093.1-three_prime_utr	PI0015093.1-three_prime_utr-chr01:6180017..6180047	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0015093.1-cds	PI0015093.1-cds-chr01:6180048..6180287	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0015093.1-five_prime_utr	PI0015093.1-five_prime_utr-chr01:6180288..6180416	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0015093.1	PI0015093.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity