PI0014648.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0014648.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 5389394 .. 5390105 (-)
Sequence length	243
RNA-Seq Expression	PI0014648.1
Synteny	PI0014648.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAAATTGATATTGATAAAGATGTAGAAGGTAATTCTAGACCATTATTGGATGTAACTGATGTTGAGAATGCAACTTATAAAGATGATGGGAGTGACATCAACTCCGACAATCTAATCTCATTGAAAAACTCGTCTGATTCTCGAGATAGTGATAAGATAACATATCCTAGCTTTAGGAAAATAATAGGTTATGGGATGCCACACTTTGAATTAGGTATGTTGTTTAACTCTTTATGTGAGTTCAAGAATGTTGTAGCAGATTATTTAGTTAGGAGGATGTCAGATACAATTTATAAAAAATATGACAAGTTGAGAGTTCGAGCCAAATGTGTAGAATTATAAATGGGTGGTGTATGTTGCTAAGGTTCAAGGAGAAATAACTTACCAATTGAAGACTTTTTGCCGATGAATACTCGTGTAATAGATCCTTTCAAAATCTACGACTAACTTCTAAAGAGCAAATGATTTTAAAGAGTAACCAAATATGAGATTGTTTGACATCCAAGAAAAAGTATAACGTACATACATTTTCCAAATTAGTAAAATGAAAGCATCTGGAGCTAGAAGTTTAGCTTTAGATATTGTGAAAGTATCACATGAACGTGAAGAACAATATCAACGATTATGGGAGATTCGTAGTTTCAATCTGATATTCAATTATTTTTTTATACTTAAATTTGCAGGATCTAGTGCCAACATTCAATGA

mRNA sequence

ATGTTTGAAATTGATATTGATAAAGATGTAGAAGGTAATTCTAGACCATTATTGGATGTAACTGATGTTGAGAATGCAACTTATAAAGATGATGGGAGTGACATCAACTCCGACAATCTAATCTCATTGAAAAACTCGTCTGATTCTCGAGATAGTGATAAGATAACATATCCTAGCTTTAGGAAAATAATAGGTTATGGGATGCCACACTTTGAATTAGGATCTAGTGCCAACATTCAATGA

Coding sequence (CDS)

ATGTTTGAAATTGATATTGATAAAGATGTAGAAGGTAATTCTAGACCATTATTGGATGTAACTGATGTTGAGAATGCAACTTATAAAGATGATGGGAGTGACATCAACTCCGACAATCTAATCTCATTGAAAAACTCGTCTGATTCTCGAGATAGTGATAAGATAACATATCCTAGCTTTAGGAAAATAATAGGTTATGGGATGCCACACTTTGAATTAGGATCTAGTGCCAACATTCAATGA

Protein sequence

MFEIDIDKDVEGNSRPLLDVTDVENATYKDDGSDINSDNLISLKNSSDSRDSDKITYPSFRKIIGYGMPHFELGSSANIQ

Homology

[Close]

BLAST of PI0014648.1 vs. ExPASy TrEMBL
Match: A0A6J1DI69 (uncharacterized protein LOC111021158 OS=Momordica charantia OX=3673 GN=LOC111021158 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 4   IDIDKDVEGN-SRPLLDVTDVENATYKDDGSDINSDNLISLKNSSDSRDSDKITYPSFRK 63
           I IDKDVEG  S+P   +   +N    D GSDI+S  L+SLK+SSDS    +I YP +R+
Sbjct: 134 IYIDKDVEGTASKPSEIIGIDDNVENNDGGSDIDSSELLSLKDSSDSEVDVRIKYPVYRE 193

Query: 64  IIGYGMPHFELGSSAN 79
             G   P FELG S N
Sbjct: 194 TTGDEKPXFELGMSFN 209

[Close]

BLAST of PI0014648.1 vs. NCBI nr
Match: XP_022153708.1 (uncharacterized protein LOC111021158 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 4   IDIDKDVEGN-SRPLLDVTDVENATYKDDGSDINSDNLISLKNSSDSRDSDKITYPSFRK 63
           I IDKDVEG  S+P   +   +N    D GSDI+S  L+SLK+SSDS    +I YP +R+
Sbjct: 134 IYIDKDVEGTASKPSEIIGIDDNVENNDGGSDIDSSELLSLKDSSDSEVDVRIKYPVYRE 193

Query: 64  IIGYGMPHFELGSSAN 79
             G   P FELG S N
Sbjct: 194 TTGDEKPXFELGMSFN 209

The following BLAST results are available for this feature:

BLAST of PI0014648.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014648.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DI69	1.4e-05	48.68	uncharacterized protein LOC111021158 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of PI0014648.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153708.1	3.0e-05	48.68	uncharacterized protein LOC111021158 [Momordica charantia]	[more]

BLAST of PI0014648.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0014648	PI0014648	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014648.1-exon	PI0014648.1-exon-chr01:5389394..5389416	exon
PI0014648.1-exon	PI0014648.1-exon-chr01:5389886..5390105	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014648.1-cds	PI0014648.1-cds-chr01:5389394..5389416	CDS
PI0014648.1-cds	PI0014648.1-cds-chr01:5389886..5390105	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0014648.1	PI0014648.1-protein	polypeptide